| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF015L19 | Sequence | 585 | 000846 (14) | ref|XP_009798338.1| | 3e-34 | PREDICTED: zinc finger protein CONSTANS-LIKE 6-like [Nicotiana sylvestris] | 622 | 013673 (12) | ref|XP_006468698.1| | 3e-26 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like [Citrus sinensis] gb|KDO76 |
| JMSF001H24 | Sequence | 283 | 000846 (14) | 752 | 013673 (12) | ref|XP_007044348.1| | 2e-45 | B-box type zinc finger protein with CCT domain, putative [Theobroma cacao] gb|E | |||
| JMSF003I08 | Sequence | 327 | 000846 (14) | ref|XP_009798338.1| | 1e-07 | PREDICTED: zinc finger protein CONSTANS-LIKE 6-like [Nicotiana sylvestris] | 787 | 013673 (12) | ref|XP_007044348.1| | 2e-45 | B-box type zinc finger protein with CCT domain, putative [Theobroma cacao] gb|E |
| JMSF012A02 | Sequence | 477 | 000846 (14) | ref|XP_009798338.1| | 1e-27 | PREDICTED: zinc finger protein CONSTANS-LIKE 6-like [Nicotiana sylvestris] | 661 | 013673 (12) | ref|XP_007044348.1| | 2e-40 | B-box type zinc finger protein with CCT domain, putative [Theobroma cacao] gb|E |
| JMSF014E09 | Sequence | 267 | 000846 (14) | 720 | 013673 (12) | ref|XP_007044348.1| | 2e-43 | B-box type zinc finger protein with CCT domain, putative [Theobroma cacao] gb|E | |||
| JMSF022F24 | Sequence | 638 | 000846 (14) | ref|XP_009798338.1| | 1e-37 | PREDICTED: zinc finger protein CONSTANS-LIKE 6-like [Nicotiana sylvestris] | 747 | 013673 (12) | ref|XP_007044348.1| | 8e-45 | B-box type zinc finger protein with CCT domain, putative [Theobroma cacao] gb|E |
| JMSF027O04 | Sequence | 637 | 000846 (14) | ref|XP_009798338.1| | 2e-37 | PREDICTED: zinc finger protein CONSTANS-LIKE 6-like [Nicotiana sylvestris] | 686 | 013673 (12) | ref|XP_007044348.1| | 1e-45 | B-box type zinc finger protein with CCT domain, putative [Theobroma cacao] gb|E |
| JMSF028P14 | Sequence | 623 | 000846 (14) | ref|XP_009798338.1| | 8e-36 | PREDICTED: zinc finger protein CONSTANS-LIKE 6-like [Nicotiana sylvestris] | 710 | 013673 (12) | ref|XP_009603861.1| | 3e-55 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like [Nicotiana tomentosiformis |
| JMSF033E24 | Sequence | 687 | 000846 (14) | ref|XP_007036519.1| | 3e-41 | Transcription factor, putative [Theobroma cacao] gb|EOY21020.1| Transcription fa | 746 | 013673 (12) | ref|XP_007044348.1| | 3e-44 | B-box type zinc finger protein with CCT domain, putative [Theobroma cacao] gb|E |
| JMSF033N13 | Sequence | 639 | 000846 (14) | ref|XP_009798338.1| | 7e-37 | PREDICTED: zinc finger protein CONSTANS-LIKE 6-like [Nicotiana sylvestris] | 652 | 013673 (12) | ref|XP_006468698.1| | 2e-20 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like [Citrus sinensis] gb|KDO76 |
| JMSF042C10 | Sequence | 750 | 000846 (14) | ref|XP_007036519.1| | 6e-41 | Transcription factor, putative [Theobroma cacao] gb|EOY21020.1| Transcription fa | 795 | 013673 (12) | ref|XP_007044348.1| | 3e-45 | B-box type zinc finger protein with CCT domain, putative [Theobroma cacao] gb|E |
| JMSF052D13 | Sequence | 697 | 000846 (14) | ref|XP_007036519.1| | 5e-42 | Transcription factor, putative [Theobroma cacao] gb|EOY21020.1| Transcription fa | 940 | 013673 (12) | ref|XP_009603861.1| | 6e-52 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like [Nicotiana tomentosiformis |
This contig is upended
. : . : . : . : . : . :
rJMSF028P14+ TCGGA
____________________________________________________________
consensus TCGGA
. : . : . : . : . : . :
rJMSF028P14+ CGTGGAGTTGGCGGAGTTCGCTGCCGACGTAGAGACGTTGTTAGGAGACGATGATGTTGG
rJMSF052D13+ TGGAGTNGGCGGAGTTCGCTGCCGACGTAGAGACGTTGTTAGGAGACGATGATGTTGG
____________________________________________________________
consensus CGTGGAGTTGGCGGAGTTCGCTGCCGACGTAGAGACGTTGTTAGGAGACGATGATGTTGG
. : . : . : . : . : . :
rJMSF028P14+ GGAAGACAAAGCGACGGCGGCGGTGAAGATTGAGATTAATGGGGGCGATTGTACGGAGGC
rJMSF052D13+ GGAAGACAAAGCGACGGCGGCNGTGAAGATTGAGATTAATGGGGGCGATTGTACGGAGGC
____________________________________________________________
consensus GGAAGACAAAGCGACGGCGGCGGTGAAGATTGAGATTAATGGGGGCGATTGTACGGAGGC
. : . : . : . : . : . :
rJMSF028P14+ GTTGAATTGGAGTTTTGGGGAAGAGCAGGAAGTTGAGCAG-AAAGTGATGATGACGATGT
rJMSF003I08+ AGCAGGAAGNTGAGCAG-AAAGTGATGATGACGATGT
rJMSF042C10+ GAAGAGCAGGAAGTTGAGCAGNAAAGTGATGATGACGATGT
rJMSF022F24+ GGAGTTTTGGGGAAGAGCAGGAAGTTGAGCAG-AGAGTGATGATGACGATGT
rJMSF001H24+ GGGAAGAGCAGGAAGTTGAGCAG-AAAGTGATGATGACGATGT
rJMSF033E24+ GGAGTTTTGGGGAAGAGCNGGAAGTTGAGCNG-AAAGTGATGATGACGATGT
rJMSF052D13+ GTTGAATTGGAGTTTTGGGGAAGAGCAGGAAGTTGAGCAG-AAAGTGATGATGACGATGT
____________________________________________________________
consensus GTTGAATTGGAGTTTTGGGGAAGAGCAGGAAGTTGAGCAG-AAAGTGATGATGACGATGT
. : . : . : . : . : . :
rJMSF028P14+ TGAGTGGATTTGATGAGTCGTCGTCGTCCATGGAAAGTGGAAGCTGTAAAGAAGAAGTGG
rJMSF027O04+ TGATGAGTCGTCGTCGTCCATGGAAAGTGGAAGCTGTAAAGAAGAAGTGG
rJMSF003I08+ TGAGTGGATTTGATGAGTCGTCGTCGTCCATGGAAAGTGGAAGCTGTAAAGAAGAAGTGG
rJMSF014E09+ AAAGTGGAAGCTGTAAAGAAGAAGTGG
rJMSF042C10+ TGAGTGGATTTGATGAGTCGTCGTCGTCCATGGAAAGTGGAAGCTGTAAAGAAGAAGTGG
rJMSF022F24+ TGAGTGGATTTGATGAGTCGTCGTCGTCCATGGAAAGTGGAAGCTGTAAAGAAGAAGTGG
rJMSF001H24+ TGAGTGGATTTGATGAGTCGTCGTCGTCCATGGAAAGTGGAAGCTGTAAAGAAGAAGTGG
rJMSF033E24+ TGAGTGGATTTGATGAGTCGTCGTCGTCCATGGAAAGTGGAAGCTGTAAA-AGAAAGTGG
rJMSF052D13+ TGAGTGGATTTGATGAGTCGTCGTCGTCCATGGAAAGTGGAAGCTGTAAAGAAGAAGTGG
____________________________________________________________
consensus TGAGTGGATTTGATGAGTCGTCGTCGTCCATGGAAAGTGGAAGCTGTAAAGAAGAAGTGG
. : . : . : . : . : . :
rJMSF028P14+ CGAAGAAGTCGAGGATGCTTTTAAGTCTTAACTACGAGGAAGTTATCAGTGCTTGGGCTA
rJMSF027O04+ CGAAGAAGTCGAGGATGCTTTTAAGTCTTAACTACGAGGAAGTTATCAGTGCTTGGGCTA
rJMSF012A02+ ACTACGAGGAAGTTATCAGTGCTTGGGCTA
rJMSF003I08+ CGAAGAAGTCGAGGATGCTTTTAAGTCTTAACTACGAGGAAGTTATCAGTGCTTGGGCTA
rJMSF014E09+ CGAAGAAGTCGAGGATGCTTTTAAGTCTTAACTACGAGGAAGTTATCAGTGCTNGGGCTA
rJMSF042C10+ CGAAGAAGTCGAGGATGCTTTTAAGTCTTAACTACGAGGAAGTTATCAGTGCTTGGGCTA
rJMSF022F24+ CGAAGAAGTCGAGGATGCTTTTAAGTCTTAACTACGAGGAAGTTATCAGTGCTTGGGCTA
rJMSF001H24+ CGAAGAAGTCGAGGATGCTTTTAAGTCTTAACTACGAGGAAGTTATCAGTGCTTGGGCTA
rJMSF033E24+ CGAAGAAGTCGAGGATGCTTTTAAGTCTTAACTACGAGGAAGTTATCAGTGCTTGGGCTA
rJMSF052D13+ CGAAGAAGTCGAGGATGCTTTTAAGTCTTAACTACGAGGAAGTTATCAGTGCTTGGGCTA
____________________________________________________________
consensus CGAAGAAGTCGAGGATGCTTTTAAGTCTTAACTACGAGGAAGTTATCAGTGCTTGGGCTA
. : . : . : . : . : . :
rJMSF028P14+ GCCAAGGTTGTCCCTGGACTGATGGAACTCGACCCCATTTCGACCCAAACCATTGCTGGC
rJMSF027O04+ GCCAAGGTTGTCCCTGGACTGATGGAACTCGACCCCATTTCGACCCAAACCATTGCTGGC
rJMSF012A02+ GCCAAGGTTGTCCCTGGACTGATGGAACTCGACCCCATTTCGACCCAAACCATTGCTGGC
rJMSF003I08+ GCCAAGGTTGTCCCTGGACTGATGGAACTCGACCCCATTTCGACCCAAACCATTGCTGGC
rJMSF014E09+ GCCAAGGTTGTCCCTGGACNGATGGAACTCGACCCCATTTCGACCCAAACCANTGCTGGC
rJMSF042C10+ GCCAAGGTTGTCCCTGGACTGATGGAACTCGACCCCATTTCGACCCAAACCATTGCTGGC
rJMSF022F24+ GCCAAGGTTGTCCCTGGACTGATGGAACTCGACCCCATTTCGACCCAAACCATTGCTGGC
rJMSF001H24+ GCCAAGGTTGTCCCTGGACTGATGGAACTCGACCCCATTTCGACCCAAACCATTGCTGGC
rJMSF033E24+ GCCAAGGTTGTCCCTGGACTGATGGAACTCGACCCCATTTCGACCCAAACCATTGCTGGC
rJMSF052D13+ GCCAAGGTTGTCCCTGGACTGATGGAACTCGACCCCATTTCGACCCAAACCATTGCTGGC
rJMFF015L19+ TTCGACCCAAACCATTGCTGGC
____________________________________________________________
consensus GCCAAGGTTGTCCCTGGACTGATGGAACTCGACCCCATTTCGACCCAAACCATTGCTGGC
. : . : . : . : . : . :
rJMSF028P14+ CAGATTTCATGGGAGGAGATCATCATCATCATCATCCATACGGGTCTGCAATGATGATGA
rJMSF027O04+ CAGATTTCATGGGAGGAGATCATCATCATCATCATCCATACGGGTCTGCAATGATGATGA
rJMSF012A02+ CAGATTTCATGGGAGGAGATCATCATCATCATCATCCATACGGGTCTGCAATGATGATGA
rJMSF033N13+ GGGAGGAGATCATCATCATCATCATCCATACGGGTCTGCAATGATGATGA
rJMSF003I08+ CAGATTTCATGGGAGGAGATCATCATCATCATCATCCATACGGGTCTGCAATGATGATGA
rJMSF014E09+ CAGATTTCATGGGAGGAGATCATCATCATCATCATCCATACGGGTCTGCAATGATGATGA
rJMSF042C10+ CAGATTTCATGGGAGGAGATCATCATCATCATCATCCATACGGGTCTGCAATGATGATGA
rJMSF022F24+ CAGATTTCATGGGAGGAGATCATCATCATCATCATCCATACGGGTCTGCAATGATGATGA
rJMSF001H24+ CAGATTTCATGGGAGGAGATCATCATCATCATCATCCATACGGGTCTGCAATGATGATGA
rJMSF033E24+ CAGATTTCATGGGAGGAGATCATCATCATCATCATCCATACGGGTCTGCAATGATGATGA
rJMSF052D13+ CAGATTTCATGGGAGGAGATCATCATCATCATCATCCATACGGGTCTGCAATGATGATGA
rJMFF015L19+ CAGATTTCATGGGAGGAGATCATCATCATCATCATCCATACGGGTNTGCAATGATGATGA
____________________________________________________________
consensus CAGATTTCATGGGAGGAGATCATCATCATCATCATCCATACGGGTCTGCAATGATGATGA
. : . : . : . : . : . :
rJMSF028P14+ GACGAAGCGACGAAGGGAGAGAAGCACGGGTGAGTCGATACAGGGAGAAGAGGAGGACGA
rJMSF027O04+ GACGAAGCGACGAAGGGAGAGAAGCACGGGTGAGTCGATACAGGGAGAAGAGGAGGACGA
rJMSF012A02+ GACGAAGCGACGAAGGGAGAGAAGCACGGGTGAGTCGATACAGGGAGAAGAGGAGGACGA
rJMSF033N13+ GACGAAGCGACGAAGGGAGAGAAGCACGGGTGAGTCGATACAGGGAGAAGAGGAGGACGA
rJMSF003I08+ GACGAAGCGACGAAGGGAGAGAAGCACGGGTGAGTCGATACAGGGAGAAGAGGAGGACGA
rJMSF014E09+ GACGAAGCGACGAAGGGAGAGAAGCACGGGTGAGTCGATACAGGGAGAAGAGGAGGACGA
rJMSF042C10+ GACGAAGCGACGAAGGGAGAGAAGCACGGGTGAGTCGATACAGGGAGAAGAGGAGGACGA
rJMSF022F24+ GACGAAGCGACGAAGGGAGAGAAGCACGGGTGAGTCGATACAGGGAGAAGAGGAGGACGA
rJMSF001H24+ GACGAAGCGACGAAGGGAGAGAAGCACGGGTGAGTCGATACAGGGAGAAGAGGAGGACGA
rJMSF033E24+ GACGAAGCGACGAAGGGAGAGAAGCACGGGTGAGTCGATACAGGGAGAAGAGGAGGACGA
rJMSF052D13+ GACGAAGCGACGAAGGGAGAGAAGCACGGGTGAGTCGATACAGGGAGAAGAGGAGGACGA
rJMFF015L19+ GACGAAGCGACGAAGGGAGAGAAGCACGGGTGAGTCGATACAGGGAGAAGAGGAGGACGA
____________________________________________________________
consensus GACGAAGCGACGAAGGGAGAGAAGCACGGGTGAGTCGATACAGGGAGAAGAGGAGGACGA
. : . : . : . : . : . :
rJMSF028P14+ GGTTGTTCTCAAAGAAAATTCGGTACGAGGTGAGGAAATTGAATGCAGAGAAGAGGCCTC
rJMSF027O04+ GGTTGTTCTCAAAGAAAATTCGGTACGAGGTGAGGAAATTGAATGCAGAGAAGAGGCCTC
rJMSF012A02+ GGTTGTTCTCAAAGAAAATTCGGTACGAGGTGAGGAAATTGAATGCAGAGAAGAGGCCTC
rJMSF033N13+ GGTTGTTCTCAAAGAAAATTCGGTACGAGGTGAGGAAATTGAATGCAGAGAAGAGGCCTC
rJMSF003I08+ GGTTGTTCTCAAAGAAAATTCGGTACGAGGTGAGGAAATTGAATGCAGAGAAGAGGCCTC
rJMSF014E09+ GGTTGTTCTCAAAGAAAATTCGGTACGAGGTGAGGAAATTGAATGCAGAGAAGAGGCCTC
rJMSF042C10+ GGTTGTTCTCAAAGAAAATTCGGTACGAGGTGAGGAAATTGAATGCAGAGAAGAGGCCTC
rJMSF022F24+ GGTTGTTCTCAAAGAAAATTCGGTACGAGGTGAGGAAATTGAATGCAGAGAAGAGGCCTC
rJMSF001H24+ GGTTGTTCTCAAAGAAAATTCGGTACGAGGTGAGGAAATTGAATGCAGAGAAGAGGCCTC
rJMSF033E24+ GGTTGTTCTCAAAGAAAATTCGGTACGAGGTGAGGAAATTGAATGCAGAGAAGAGGCCTC
rJMSF052D13+ GGTTGTTCTCAAAGAAAATTCGGTACGAGGTGAGGAAATTGAATGCAGAGAAGAGGCCTC
rJMFF015L19+ GGTTGTTCTCAAAGAAAATTCGGTACGAGGTGAGGAAATTGAATGCAGAGAAGAGGCCTC
____________________________________________________________
consensus GGTTGTTCTCAAAGAAAATTCGGTACGAGGTGAGGAAATTGAATGCAGAGAAGAGGCCTC
. : . : . : . : . : . :
rJMSF028P14+ GTTTGAAAGGGCGGTTTGTGAAGAGGTCATCATTGTTTCAGCCACCGCCGCCCTTCCCCA
rJMSF027O04+ GTTTGAAAGGGCGGTTTGTGAAGAGGTCATCATTGTTTCAGCCACCGCCGCCCTTCCCCA
rJMSF012A02+ GTTTGAAAGGGCGGTTTGTGAAGAGGTCATCATTGTTTCAGCCACCGCCGCCCTTCCCCA
rJMSF033N13+ GTTTGAAAGGGCGGTTTGTGAAGAGGTCATCATTGTTTCAGCCACCGCCGCCCTTCCCCA
rJMSF003I08+ GTTTGAAAGGGCGGTTTGTGAAGAGGTCATCATTGTTTCAGCCACCGCCGCCCTTCCCCA
rJMSF014E09+ GTTTGAAAGGGCGGTTTGTGAAGAGGTCATCATTGTTTCAGCCACCGCCGCCCTTCCCCA
rJMSF042C10+ GTTTGAAAGGGCGGTTTGTGAAGAGGTCATCATTGTTTCAGCCACCGCCGCCCTTCCCCA
rJMSF022F24+ GTTTGAAAGGGCGGTTTGTGGAGAGGTCATCATTGTTTCAGCCACCGCCGCCCTTCCCCA
rJMSF001H24+ GTTTGAAAGGGCGGTTTGTGAAGAGGTCATCATTGTTTCAGCCACCGCCGCCCTTCCCCA
rJMSF033E24+ GTTTGAAAGGGCGGTTTGTGAAGAGGTCATCATTGTTTCAGCCACCGCCGCCCTTCCCCA
rJMSF052D13+ GTTTGAAAGGGCGGTTTGTGAAGAGGTCATCATTGTTTCAGCCACCGCCGCCCTTCCCCA
rJMFF015L19+ GTTTGAAAGGGCGGTTTGTGAAGAGGTCATCATTGTTTCAGCCACCGCCGCCCTTCCCCA
____________________________________________________________
consensus GTTTGAAAGGGCGGTTTGTGAAGAGGTCATCATTGTTTCAGCCACCGCCGCCCTTCCCCA
. : . : . : . : . : . :
rJMSF028P14+ ACTACCTCCTCAATCGACATTTATGAATTGATGAAGGTCGAATTCAACAACTTTATGAGA
rJMSF027O04+ ACTACCTCCTCAATCGACATTTATGAATTGATGAAGGTCGAATTCAACAACTTTATGAGA
rJMSF012A02+ ACTACCTCCTCAATCGACATTTATGAATTGATGAAGGTCGAATTCAACAACTTTATGAGA
rJMSF033N13+ ACTACCTCCTCAATCGACATTTATGAATTGATGAAGGTCGAATTCAACAACTTTATGAGA
rJMSF003I08+ ACTACCTCCTCAATCGACATTTATGAATTGATGAAGGTCGAATTCAACAACTTTATGAGA
rJMSF014E09+ ACTACCTCCTCAATCGACATTTATGAATTGATGAAGGTCGAATTCAACAACTTTATGAGA
rJMSF042C10+ ACTACCTCCTCAATCGACATTTATGAATTGATGAAGGTCGAATTCAACAACTTTATGAGA
rJMSF022F24+ ACTACCTCCTCAATCGACATTTATGAATTGATGAAGGTCGAATTCAACAACTTTATGAGA
rJMSF001H24+ ACTACCTCCTCAATCGACATTTATGAATTGATGAAGGTCGAATTCAACAACTTTATGAGA
rJMSF033E24+ ACTACCTCCTCAATCGACATTTATGAATTGATGAAGGTCGAATTCAACAACTTTATGAGA
rJMSF052D13+ ACTACCTCCTCAATCGACATTTATGAATTGATGAAGGTCGAATTCAACAACTTTATGAGA
rJMFF015L19+ ACTACCTCCTCAATCGACATTTATGAATTGATGAAGGTCGAATTCAACAACTTTATGAGA
____________________________________________________________
consensus ACTACCTCCTCAATCGACATTTATGAATTGATGAAGGTCGAATTCAACAACTTTATGAGA
. : . : . : . : . : . :
rJMSF028P14+ TATATATTAATTAATGTTACATATATGGAATCTGGGATATTGCCAT
rJMSF027O04+ TATATATTAATTAATGTTACATATATGGAATCTGGGATATTGCCATATTGGATTACAATC
rJMSF012A02+ TATATATTAATTAATGTTACATATATGGAATCTGGGATATTGCCATATTGGATTACAATC
rJMSF033N13+ TATATATTAATTAATGTTACATATATGGAATCTGGGATATTGCCATATTGGATTACAATC
rJMSF003I08+ TATATATTAATTAATGTTACATATATGGAATCTGGGATATTGCCATATTGGATTACAATC
rJMSF014E09+ TATATATTAATTAATGTTACATATATGGAATCTGGGATATTGCCATATTGGATTACAATC
rJMSF042C10+ TATATATTAATTAATGTTACATATATGGAATCTGGGATATTGCCATATTGGATTACAATC
rJMSF022F24+ TATATATTAATTAATGTTACATATATGGAATCTGGGATATTGCCATATTGGATTACAATC
rJMSF001H24+ TATATATTAATTAATGTTACATATATGGAATCTGGGATATTGCCATATTGGATTACAATC
rJMSF033E24+ TATATATTAATTAATGTTACATATATGGAATCTGGGATATTGCCATATTGGATTACAATC
rJMSF052D13+ TATATATTAATTAATGTTACATATATGGAATCTGGGATATTGCCATATTGGATTACAATC
rJMFF015L19+ TATATATTAATTAATGTTACATATATGGAATCTGGGATATTGCCATATTGGATTACAATC
____________________________________________________________
consensus TATATATTAATTAATGTTACATATATGGAATCTGGGATATTGCCATATTGGATTACAATC
. : . : . : . : . : . :
rJMSF027O04+ CACACTAATTAAACCTAGGTTTTTTTCCCTATGACTAATCATTCAGTCATGGTGATGCAA
rJMSF012A02+ CACACTAATTAAACCTAGGTTTTTTTCCCTATGACTAATCATTCAGTCATGGTGATGCAA
rJMSF033N13+ CACACTAATTAAACCTAGGTTTTTTTCCCTATGACTAATCATTCAGTCATGGTGATGCAA
rJMSF003I08+ CACACTAATTAAACCTAGGTTTTTTTCCCTATGACTAATCATTCAGTCATGGTGATGCAA
rJMSF014E09+ CACACTAATTAAACCTAGGTTTTTTTCCCTATGACTAATCATTCAGTCATGGTGATGCAA
rJMSF042C10+ CACACTAATTAAACCTAGGTTTTTTTCCCTATGACTAATCATTCAGTCATGGTGATGCAA
rJMSF022F24+ CACACTAATTAAACCTAGGTTTTTTTCCCTATGACTAATCATTCAGTCATGGTGATGCAA
rJMSF001H24+ CACACTAATTAAACCTAGGTTTTTTTCCCTATGACTAATCATTCAGTCATGGTGATGCAA
rJMSF033E24+ CACACTAATTAAACCTAGGTTTTTTTCCCTATGACTAATCATTCAGTCATGGTGATGCAA
rJMSF052D13+ CACACTAATTAAACCTAGGTTTTTTTCCCTATGACTAATCATTCAGTCATGGTGATGCAA
rJMFF015L19+ CACACTAATTAAACCTAGGTTTTTTTCCCTATGACTAATCATTCAGTCATGGTGATGCAA
____________________________________________________________
consensus CACACTAATTAAACCTAGGTTTTTTTCCCTATGACTAATCATTCAGTCATGGTGATGCAA
. : . : . : . : . : . :
rJMSF027O04+ GATATATATATTTATATATATGTGGGCATAACTTAGGGGAGTTTGGCTCATAACTTTTAT
rJMSF012A02+ GATATATATATTTATATATATGTGGGCATAACTTAGGGGAGTTTGGCTCATAACTTTTAT
rJMSF033N13+ GATATATATATTTATATATATGTGGGCATAACTTAGGGGAGTTTGGCTCATAACTTTTAT
rJMSF003I08+ GATATATATATTTATATATATGTGGGCATAACTTAGGGGAGTTTGGCTCATAACTTTTAT
rJMSF014E09+ GATATATATATTTATATATATGTGGGCATAACTTAGGGGAGTTTGGCTCATAACTNTTAT
rJMSF042C10+ GATATATATATTTATATATATGTGGGCATAACTTAGGGGAGTTTGGCTCATAACTTTTAT
rJMSF022F24+ GATATATATATTTATATATATGTGGGCATAACTTAGGGGAGTTTGGCTCATAACTTTTAT
rJMSF001H24+ GATATATATATTTATATATATGTGGGCATAACTTAGGGGAGTTTGGCTCATAACTTTTAT
rJMSF033E24+ GATATATATATTTATATATATGTGGGCATAACTTAGGGGAGTTTGGCTCATAACTTTTAT
rJMSF052D13+ GATATATATATTTATATATATGTGGGCATAACTTAGGGGAGTTTGGCTCATAACTTTTAT
rJMFF015L19+ GATATATATATTTATATATATGTGGGCATAACTTAGGGGAGTTTGGCTCATAACTTTTAT
____________________________________________________________
consensus GATATATATATTTATATATATGTGGGCATAACTTAGGGGAGTTTGGCTCATAACTTTTAT
. : . : . : . : . : . :
rJMSF027O04+ TCTCTGATGTATCTTCGGATTCGTTTCCGATTACTT
rJMSF012A02+ TCTCTGATGTATCTTCGGATTCGTTTCCGATTACTTTGTTTTGACTATTTTTGTAATAGC
rJMSF033N13+ TCTCTGATGTATCTTCGGATTCGTTTCCGATTACTTTGTTTTGACTATTTTTGTAATAGC
rJMSF003I08+ TCTCTGATGTATCTTCGGATTCGTTTCCGATTACTTTGTTTTGACTATTTTTGTAATAGC
rJMSF014E09+ TCTCTGATGTATCTTCGGATTCGTTTCCGATTACTTTGTTTTGACTATTTTTGTAATAGC
rJMSF042C10+ TCTCTGATGTATCTTCGGATTCGTTTCCGATTACTTTGTTTTGACTATTTTTGTAATAGC
rJMSF022F24+ TCTCTGATGTATCTTCGGATTCGTTTCCGATTACT
rJMSF001H24+ TCTCTGATGTATCTTCGGATTCGTTTCCGATTACTT
rJMSF033E24+ TCTCTGATGTATCTTCGGATTCGTTTCCGATTACTT
rJMSF052D13+ TCTCTGATGTATCTTCGGATTCGTTTCCGATTACTTTGTTTTGACTATTTTTGTAATAGC
rJMFF015L19+ TCTCTGATGTATCTTCGGATTCGTTTCCGATTACTTTGTTTTGACTATTTTTGTAATAGC
____________________________________________________________
consensus TCTCTGATGTATCTTCGGATTCGTTTCCGATTACTTTGTTTTGACTATTTTTGTAATAGC
. : . : . : . : . : . :
rJMSF012A02+ AAAAGTTTATTGCCCGCTATGCCAAAAGGGG
rJMSF033N13+ AAAAGTTTATTGCCCGCTATGCCAAAAGGGG
rJMSF003I08+ AAAAGTTTATTGCCCGCTATGCCAAAAGGGG
rJMSF014E09+ AAAAGTNTATTGCCCGCTATGCCAAAAGGGGTG
rJMSF042C10+ AAAAGTTTATTGCCCGCTATGCCAAAAGGGGTG
rJMSF052D13+ AAAAGTTTATTGCCCGCTATGCCAAAAGGGGTGT
rJMFF015L19+ AAAAGTTTATTGCCCGCTATGCCAAAAGGGGTGTTGTAAAATATTAGTAAAATTAACATT
____________________________________________________________
consensus AAAAGTTTATTGCCCGCTATGCCAAAAGGGGTGTTGTAAAATATTAGTAAAATTAACATT