| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014E02 | Sequence | 734 | 013664 (3) | ref|NP_001275280.1| | 1e-68 | branched-chain amino acid aminotransferase [Solanum tuberosum] gb|AAF07192.1|AF1 | |||||
| JMFF032A20 | Sequence | 547 | 007765 (3) | ref|XP_009630079.1| | 2e-70 | PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic-like [Ni | 721 | 013664 (3) | ref|NP_001275280.1| | 4e-66 | branched-chain amino acid aminotransferase [Solanum tuberosum] gb|AAF07192.1|AF1 |
| JMSF007D18 | Sequence | 257 | 007765 (3) | gb|ABW76425.1| | 5e-07 | branched-chain aminotransferase [Nicotiana benthamiana] | 327 | 013664 (3) | emb|CDP02646.1| | 6e-52 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF007D18+ GTCTTGCCCCAGCTCCTGAATATACTTTTA
____________________________________________________________
consensus GTCTTGCCCCAGCTCCTGAATATACTTTTA
. : . : . : . : . : . :
rJMSF007D18+ TAATTTATGTATCCCCTGTGGGTAACTACTTCAAGGAAGGTTTAGCACCAATTAATCTGG
____________________________________________________________
consensus TAATTTATGTATCCCCTGTGGGTAACTACTTCAAGGAAGGTTTAGCACCAATTAATCTGG
. : . : . : . : . : . :
rJMSF007D18+ TGGTTGAGACTGAAATGCATCGTGCGACCCCTGGGGGTACTGGAAGTGTCAAGACTATAG
rJMFF032A20+ AG
rJMFF014E02+ TGTCAAGACTATAG
____________________________________________________________
consensus TGGTTGAGACTGAAATGCATCGTGCGACCCCTGGGGGTACTGGAAGTGTCAAGACTATAG
. : . : . : . : . : . :
rJMSF007D18+ GAAATTATGCTGCAGTCTTGAAGGCACAGAGTGCTGCTAAAGCAAAAGGCTATTCTGATG
rJMFF032A20+ GAAATTATGCTGCAGTCTNGAAGGCACAGAGTGCTGCTAAAGCAAAAGGCTATTCTGATG
rJMFF014E02+ GAAATTATGCTGCAGTCTTGAAGGCACAGAGTGCTGCTAAAGCAAAAGGCTATTCTGATG
____________________________________________________________
consensus GAAATTATGCTGCAGTCTTGAAGGCACAGAGTGCTGCTAAAGCAAAAGGCTATTCTGATG
. : . : . : . : . : . :
rJMSF007D18+ TTCTGTACCTTGATAGTGTTCACAACAAATATCTGGAAGAAGTTTCTTCTTGCAATGTTT
rJMFF032A20+ TTCTGTACCTTGATAGTGTTCACAACAAATATCTGGAAGAAGTTTCTTCTTGCAATGTTT
rJMFF014E02+ TTCTGTACCTTGATAGTGTTCACAACAAATATCTGGAAGAAGTTTCTTCTTGCAATGTTT
____________________________________________________________
consensus TTCTGTACCTTGATAGTGTTCACAACAAATATCTGGAAGAAGTTTCTTCTTGCAATGTTT
. : . : . : . : . : . :
rJMSF007D18+ TTATGGTGAAGGGTAATATGATAGCAACTCCTGCAATAAAAGGGACCATCTTGC
rJMFF032A20+ TTATGGTGAAGGGTAATATGATAGCAACTCCTGCAATAAAAGGGACCATCTTGCCTGGTA
rJMFF014E02+ TTATGGTGAAGGGTAATATGATAGCAACTCCTGCAATAAAAGGGACCATCTTGCCTGGTA
____________________________________________________________
consensus TTATGGTGAAGGGTAATATGATAGCAACTCCTGCAATAAAAGGGACCATCTTGCCTGGTA
. : . : . : . : . : . :
rJMFF032A20+ TTACCCGGAAAAGCATAATTGATGTTGCAGTCAACCAAGGTTTCCAGGTTGAGGAACGAG
rJMFF014E02+ TTACCCGGAAAAGCATAATTGATGTTGCAGTCAACCAAGGTTTCCAGGTTGAGGAACGAG
____________________________________________________________
consensus TTACCCGGAAAAGCATAATTGATGTTGCAGTCAACCAAGGTTTCCAGGTTGAGGAACGAG
. : . : . : . : . : . :
rJMFF032A20+ CAGTCTCAGTGGATGAATTGCTTGATGCTGATGAAGTGTTCTGTACGGGAACAGCTGTGG
rJMFF014E02+ CAGTCTCAGTGGATGAATTGCTTGATGCTGATGAAGTGTTCTGTACGGGAACAGCTGTGG
____________________________________________________________
consensus CAGTCTCAGTGGATGAATTGCTTGATGCTGATGAAGTGTTCTGTACGGGAACAGCTGTGG
. : . : . : . : . : . :
rJMFF032A20+ TTGTATCACCAGTCGGAAGCATAACCCATTTAGGGAAAAAGGTGACATATGGGAGCAATG
rJMFF014E02+ TTGTATCACCAGTCGGAAGCATAACCCATTTAGGGAAAAAGGTGACATATGGGAGCAATG
____________________________________________________________
consensus TTGTATCACCAGTCGGAAGCATAACCCATTTAGGGAAAAAGGTGACATATGGGAGCAATG
. : . : . : . : . : . :
rJMFF032A20+ GAGTTGGTCTTGTTTCACAACAGCTGTACTCCACACTTACTCAACTTCAGATGGGGATTA
rJMFF014E02+ GAGTTGGTCTTGTTTCACAACAGCTGTACTCCACACTTACTCAACTTCAGATGGGGATTA
____________________________________________________________
consensus GAGTTGGTCTTGTTTCACAACAGCTGTACTCCACACTTACTCAACTTCAGATGGGGATTA
. : . : . : . : . : . :
rJMFF032A20+ CAGAGGATAAGATGGGGTGGGTTGTTGAAGTGAAGTAATCTTGAACTCATGAGATACCTA
rJMFF014E02+ CAGAGGATAAGATGGGGTGGGTTGTTGAAGTGAAGTAATCTTGAACTCATGAGATACCTA
____________________________________________________________
consensus CAGAGGATAAGATGGGGTGGGTTGTTGAAGTGAAGTAATCTTGAACTCATGAGATACCTA
. : . : . : . : . : . :
rJMFF032A20+ GTAGTTATTACCTTCTTTTTCAAGAAGTTTGAACTCAGAAGATATTAGCAACTAGTGATC
rJMFF014E02+ GTAGTTATTACCTTCTTTTTCAAGAAGTTTGAACTCAGAAGATATTAGCAACTAGTGATC
____________________________________________________________
consensus GTAGTTATTACCTTCTTTTTCAAGAAGTTTGAACTCAGAAGATATTAGCAACTAGTGATC
. : . : . : . : . : . :
rJMFF032A20+ CGCTTGTCGGACTTTGTGTTCTTGTTTGTTTACAGATTCATTCCATTGTGTACAGAATCT
rJMFF014E02+ CGCTTGTCGGACTTTGTGTTCTTGTTTGTTTACAGATTCATTCCATTGTGTACAGAATCT
____________________________________________________________
consensus CGCTTGTCGGACTTTGTGTTCTTGTTTGTTTACAGATTCATTCCATTGTGTACAGAATCT
. : . : . : . : . : . :
rJMFF032A20+ GCCTTTTTCTATATTGTTTCCGGGGAAACACCTTGCTTTGAATTGTGCCTTTTTCTCTCT
rJMFF014E02+ GCCTTTTTCTATATTGTTTCCGGGGAAACACCTTGCTTTGAATTGTGCCTTTTTCTCTCT
____________________________________________________________
consensus GCCTTTTTCTATATTGTTTCCGGGGAAACACCTTGCTTTGAATTGTGCCTTTTTCTCTCT
. : . : . : . : . : . :
rJMFF032A20+ CTCTAGCTCGCTCTTGGTAAAGAGAGAGGGTAATTAACTTCGAACTAGATTCAATTACT
rJMFF014E02+ CTCTAGCTCGCTCTTGGTAAAGAGAGAGGGTAATTAACTTCGAACTAGATTCAATTACTT
____________________________________________________________
consensus CTCTAGCTCGCTCTTGGTAAAGAGAGAGGGTAATTAACTTCGAACTAGATTCAATTACTT