| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014A10 | Sequence | 535 | 008762 (6) | gb|AHF50442.1| | 3e-40 | su, partial [Nicotiana tabacum] | 587 | 013662 (4) | emb|CDP04687.1| | 4e-45 | unnamed protein product [Coffea canephora] |
| JMSF016A22 | Sequence | 426 | 008762 (6) | gb|AHF50442.1| | 5e-54 | su, partial [Nicotiana tabacum] | 657 | 013662 (4) | ref|XP_010108425.1| | 1e-63 | Magnesium-chelatase subunit chlI [Morus notabilis] gb|EXC19453.1| Magnesium-chel |
| JMSF029F09 | Sequence | 621 | 008762 (6) | ref|XP_004248139.1| | 8e-94 | PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Solanum lycopersicu | 684 | 013662 (4) | ref|XP_010108425.1| | 2e-89 | Magnesium-chelatase subunit chlI [Morus notabilis] gb|EXC19453.1| Magnesium-chel |
| JMSF044N06 | Sequence | 744 | 008762 (6) | ref|XP_004248139.1| | 1e-109 | PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Solanum lycopersicu | 558 | 013662 (4) | emb|CDP04687.1| | 3e-31 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF029F09+ ATCCCGCTC
____________________________________________________________
consensus ATCCCGCTC
. : . : . : . : . : . :
rJMSF016A22+ TTATTGGCTCTGGAAACCCCGAGGAAGGGGAGCTTAGGCCNCAGCTTCTCG
rJMSF029F09+ GGTTTATCCTTATTGGCTCTGGAAACCCCGAGGAAGGGGAGCTTAGGCCGCAGCTTCTCG
____________________________________________________________
consensus GGTTTATCCTTATTGGCTCTGGAAACCCCGAGGAAGGGGAGCTTAGGCCGCAGCTTCTCG
. : . : . : . : . : . :
rJMSF016A22+ ATAGGTTTGGAATGCNTGCCCAAGTGGGAACGGTTNGGGATGCAGAACTGNGNGTAAAGA
rJMSF029F09+ ATAGGTTTGGAATGCATGCNCAAGTGGGAACGGTTCGGGATGCAGAACTGCGAGTAAAGA
____________________________________________________________
consensus ATAGGTTTGGAATGCATGCCCAAGTGGGAACGGTTCGGGATGCAGAACTGCGAGTAAAGA
. : . : . : . : . : . :
rJMSF016A22+ TNGTNGNGGNGAGAGCTNGGTTNGATAGGAATCCCNAGGAATTCCGGGAATTTTACAAGG
rJMSF029F09+ TNGTCGAGGNGAGAGCTCGGTTCGATAGGAATCCCAAGGAATTCCGGGAATNTTACAAGG
rJMSF044N06+ ATAGGAATCCCNAGGAATTCCGGGAATTTTACAAGG
rJMFF014A10+ GAGCTNGGTTCGATAGGAATNCCAAGGAATTCCGGGAATTTTNCAAGG
____________________________________________________________
consensus TNGTCGAGGNGAGAGCTCGGTTCGATAGGAATCCCAAGGAATTCCGGGAATTTTACAAGG
. : . : . : . : . : . :
rJMSF016A22+ CCGAGCAAGNGAAGCTCCNGGNCCAAATNGCCTNGGNTAGGAACTCCCTTTNTTCCGTTN
rJMSF029F09+ CCGAGCAAGNGAAGCTCCNGGNCCAAATCGCCTNGGCTAGGAACTCCCTTTNTTCCGTTA
rJMSF044N06+ CCGNGCAAGNGAAGCTCCNGGNCCAAATNGCCTTGGNTAGGAACTCCCTTTTTTNCGTTA
rJMFF014A10+ CCGAGCAAGAGAAGNTCCAGGNCCAAATNGCCTNGGNTAGGAACTCCCTTTTTTCCGTTN
____________________________________________________________
consensus CCGAGCAAGAGAAGCTCCAGGNCCAAATCGCCTTGGCTAGGAACTCCCTTTTTTCCGTTA
. : . : . : . : . : . :
rJMSF016A22+ CGATTGACCNTGATTTCCGNGTCAAAATNTTTAAGGTTTGCGCTGAATTGAACGTTGACG
rJMSF029F09+ CGATTGACCNTGATNTCCGTGTCAAAATNTTTAAGGTTTGCGCTGAATTGAACGTTGACG
rJMSF044N06+ CGNTTGNCCNTGATTTCCGNGTCAAAATNTTTAAGGTTTGCGNTGAANTGAACGTTGACG
rJMFF014A10+ CGATTGNCCATGATTTCCGTGTCAAAATTTTTAAGGTTTGCGCTGAATTGAACGTTGACG
____________________________________________________________
consensus CGATTGACCATGATTTCCGTGTCAAAATTTTTAAGGTTTGCGCTGAATTGAACGTTGACG
. : . : . : . : . : . :
rJMSF016A22+ GGTTGAGGGGNGANATAGTCNCGAACCGGGNTGCAAGAGCNTTGGNTTCGCTGAAAGGAA
rJMSF029F09+ GGTTGAGGGGCGANATAGTCNCGAACCGGGCTGCAAGAGCNTTGGCTTCGCTGAAAGGAA
rJMSF044N06+ GGTTGAGGGGNGANATAGTCNCGAACCGGGNTGCAAGNGCNTTGGNTTNGNTGAAAGGAA
rJMFF014A10+ GGTTGAGGGGNGATATAGTCACGAACCGGGNTGCAAGAGCATTGGNTTNGNTGAAAGGAA
____________________________________________________________
consensus GGTTGAGGGGCGATATAGTCACGAACCGGGCTGCAAGAGCATTGGCTTCGCTGAAAGGAA
. : . : . : . : . : . :
rJMSF016A22+ GAAACGAAGTAACTGCTGNGGATNTNGCAACGGTAATCCCTAACTGCTTGNGACNCNGAC
rJMSF029F09+ GAAACGAAGTAACTGCTGAGGATATCGCAACGGTAATCCCTAACTGCTTGAGACNCAGAC
rJMSF044N06+ GAAACGAAGTAACTGNTGNGGNTATNGCAACGGTAATCCCTAANTGCTTGNGACNCNGNC
rJMFF014A10+ GAAACGAAGTAACTGNTGAGGATATNGCAACGGTAATCCCTAACTGNTTGAGACNCAGAC
____________________________________________________________
consensus GAAACGAAGTAACTGCTGAGGATATCGCAACGGTAATCCCTAACTGCTTGAGACNCAGAC
. : . : . : . : . : . :
rJMSF016A22+ TCCGTAAAGATCCCTTGGNGTCCNTNGNCTNGGGGNTACTTGTCATCGNGAAATTTTNCG
rJMSF029F09+ TCCGTAAAGATCCNTTGGAGTCCATCGACTCGGGGNTACTTGTCATCGAGAAATTTTACG
rJMSF044N06+ TCCGTAAAGATCCNTTGGNGTCCATNGNCTNGGGGNTACTTGTCATCGNGAAATTTTNCG
rJMFF014A10+ TCCGTAAAGATCCATTGGAGTCCATNGACTNGGGGGTACTTGTCATNGAGAAATTTTNCG
____________________________________________________________
consensus TCCGTAAAGATCCCTTGGAGTCCATCGACTCGGGGGTACTTGTCATCGAGAAATTTTACG
. : . : . : . : . : . :
rJMSF016A22+ NGG-TTTTAATTGNGGAACGNCNTTAAGATNTATCGTTTCNTTTCGTTACNTTTACAATT
rJMSF029F09+ NGGTTTTTAATTGNGGAACGACNTTAAGATCTATCGTTTCATTTCGTTACNTTTACAATT
rJMSF044N06+ NGGTTTTTAATTGNGGNACGNCNTTAAGATNTATCGTTTCATTTCGTTACNTTTACAATT
rJMFF014A10+ AGGTTTTTAATTGAGGAACGACATTAAGATTTATNGTTTCATTTNGTTACATTTACAATT
____________________________________________________________
consensus AGGTTTTTAATTGAGGAACGACATTAAGATTTATCGTTTCATTTCGTTACATTTACAATT
. : . : . : . : . : . :
rJMSF016A22+ GCNTTTTGTCGNGTTTGCNTTATNTGATTTCCNAGCNGGCCAAATGACAAGGNTGCNGGA
rJMSF029F09+ GCNTTTTGTCGAGTTTGCNTTATNTGATTTCCAAGCNGGCCAAATGACAAGGCTGCTGGA
rJMSF044N06+ GCNTTTTGTCGNGTTTGCNTTNTTTGATTTCCNAGCCGGCCAAANGACAAGGNTGCTGGA
rJMFF014A10+ GCATTTTGTNGAGTTTGCATTATTTGATTTCCAAGCAGGCCAAANGACAAGGNTGNTGGA
____________________________________________________________
consensus GCATTTTGTCGAGTTTGCATTATTTGATTTCCAAGCCGGCCAAATGACAAGGCTGCTGGA
. : . : . : . : . : . :
rJMSF016A22+ TTTGGCTTTTAGGCNTATTAGTGAATAGTGATCAATGNGGTAAAACNATACCCCCCCCCC
rJMSF029F09+ TTTGGCTTTTAGGCNTATTAGTGAATAGTGATCAATGAGGTAAAACAATACCCCCCCCCC
rJMSF044N06+ TTTGGCTTTTAGGCATATTAGNGAATAGNGATCAATGNGGNAAAACAATACCCCCCCCCC
rJMFF014A10+ TTTGGNTTTTAGGCATATTAGNGAATAGTGATCAATGAGGTAAAACAATA-CCCCCCCCC
____________________________________________________________
consensus TTTGGCTTTTAGGCATATTAGTGAATAGTGATCAATGAGGTAAAACAATACCCCCCCCCC
. : . : . : . : . : . :
rJMSF016A22+ C
rJMSF029F09+ C
rJMSF044N06+ CCAGTATTACATTGTTCATTCTTACATAACATATC
rJMFF014A10+ CCAGTATTACATTGTTCATTCTTACATAACATATCAAAGTTTTAGCCTCTCCTGTATGGA
____________________________________________________________
consensus CCAGTATTACATTGTTCATTCTTACATAACATATCAAAGTTTTAGCCTCTCCTGTATGGA