| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012L20 | Sequence | 335 | 013657 (4) | 730 | 013657 (4) | ref|XP_009763742.1| | 5e-68 | PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Nicotiana sylvestris] | |||
| JMSF051M21 | Sequence | 655 | 013657 (4) | ref|XP_009763742.1| | 2e-68 | PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Nicotiana sylvestris] | 709 | 013657 (4) | ref|XP_009763742.1| | 4e-68 | PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMFF012L20- ACTCGACTGCCTAT
JMSF051M21- GAGCAAGTCGCAAGTGCCATAAACGACTCGACTGCCTAT
____________________________________________________________
consensus GAGCAAGTCGCAAGTGCCATAAACGACTCGACTGCCTAT
. : . : . : . : . : . :
JMFF012L20- CTGCCTCTTATCCAGAGCTCGTAATAGACTCTCCCATACAACTCCCGTCTATAACACGGT
JMSF051M21- CTGCCTCTTATCCAGAGCTCGTAATAGACTCTCCCATACAACTCCCGTCTATAACACGGT
rJMSF051M21+ ACACGGT
rJMFF012L20+ ACACGGT
____________________________________________________________
consensus CTGCCTCTTATCCAGAGCTCGTAATAGACTCTCCCATACAACTCCCGTCTATAACACGGT
. : . : . : . : . : . :
JMFF012L20- ATGATGTTGTCGGCGGCAGCACGGCCGGCGGTGAACTGTATTCTTGAATCGCCGGCTTCT
JMSF051M21- ATGATGTTGTCGGCGGCAGCACGGCCGGCGGTGAACTGTATTCTTGAATCGCCGGCTTCT
rJMSF051M21+ ATGATGTTGTCGGCGGCAGCACGGCCGGCGGTGAACTGTATTCTTGAATCGCCGGCTTCT
rJMFF012L20+ ATGATGTTGTCGGCGGCAGCACGGCCGGCGGTGAACTGTATTCTTGAATCGCCGGCTTCT
____________________________________________________________
consensus ATGATGTTGTCGGCGGCAGCACGGCCGGCGGTGAACTGTATTCTTGAATCGCCGGCTTCT
. : . : . : . : . : . :
JMFF012L20- TCATTTTCTTCTCACAAACCCTTTCTGCCAAACAAACTCTTCTTTCCCCAACCACCAACT
JMSF051M21- TCATTTTCTTCTCACAAACCCTTTCTGCCAAACAAACTCTTCTTTCCCCAACCACCAACT
rJMSF051M21+ TCATTTTCTTCTCACAAACCCTTTCTGCCAAACAAACTCTTCTTTCCCCAACCACCAACT
rJMFF012L20+ TCATTTTCTTCTCACAAACCCTTTCTGCCAAACAAACTCTTCTTTCCCCAACCACCAACT
____________________________________________________________
consensus TCATTTTCTTCTCACAAACCCTTTCTGCCAAACAAACTCTTCTTTCCCCAACCACCAACT
. : . : . : . : . : . :
JMFF012L20- GCCGCTTCTCAACCATCCCTTCTCTCAAGAAAGCTCTACGTCTCCGCATCTTCATCCGCC
JMSF051M21- GCCGCTTCTCAACCATCCCTTCTCTCAAGAAAGCTCTACGTCTCCGCATCTTCATCCGCC
rJMSF051M21+ GCCGCTTCTCAACCATCCCTTCTCTCAAGAAAGCTCTACGTCTCCGCATCTTCATCCGCC
rJMFF012L20+ GCCGCTTCTCAACCATCCCTTCTCTCAAGAAAGCTCTACGTCTCCGCATCTTCATCCGCC
____________________________________________________________
consensus GCCGCTTCTCAACCATCCCTTCTCTCAAGAAAGCTCTACGTCTCCGCATCTTCATCCGCC
. : . : . : . : . : . :
JMFF012L20- GCTGTTGATGCTCTATCCCAAGAAACCTCCGCAAAGGGTTCGTTCTCTTCAACTCCCCTT
JMSF051M21- GCTGTTGATGCTCTATCCCAAGAAACCTCCGCAAAGGGTTCGTTCTCTTCAACTCCCCTT
rJMSF051M21+ GCTGTTGATGCTCTATCCCAAGAAACCTCCGCAAAGGGTTCGTTCTCTTCAACTCCCCTT
rJMFF012L20+ GCTGTTGATGCTCTATCCCAAGAAACCTCCGCAAAGGGTTCGTTCTCTTCAACTCCCCTT
____________________________________________________________
consensus GCTGTTGATGCTCTATCCCAAGAAACCTCCGCAAAGGGTTCGTTCTCTTCAACTCCCCTT
. : . : . : . : . : . :
JMFF012L20- CACAAGGAGAAGCTTGGA
JMSF051M21- CACAAGGAGAAGCTTGGAGTGGTGGTAAAGCCAATGGAGAAACCTAGACTAGTTTTGAAG
rJMSF051M21+ CACAAGGAGAAGCTTGGAGTGGTGGTAAAGCCAATGGAGAAACCTAGACTAGTTTTGAAG
rJMFF012L20+ CACAAGGAGAAGCTTGGAGTGGTGGTAAAGCCAATGGAGAAACCTAGACTAGTTTTGAAG
____________________________________________________________
consensus CACAAGGAGAAGCTTGGAGTGGTGGTAAAGCCAATGGAGAAACCTAGACTAGTTTTGAAG
. : . : . : . : . : . :
JMSF051M21- TTCATATGGTTGGAGAAGAACATTGGGATTTCACTGGACCAAGTGATACCCGGGCATGGC
rJMSF051M21+ TTCATATGGTTGGAGAAGAACATTGGGATTTCACTGGACCAAGTGATACCCGGGCATGGC
rJMFF012L20+ TTCATATGGTTGGAGAAGAACATTGGGATTTCACTGGACCAAGTGATACCCGGGCATGGC
____________________________________________________________
consensus TTCATATGGTTGGAGAAGAACATTGGGATTTCACTGGACCAAGTGATACCCGGGCATGGC
. : . : . : . : . : . :
JMSF051M21- ACAATCCCTATAAGCCCTTACTATTTTTGGCCTAGGAAAGATGCCTGGGAGGAGCTAAAG
rJMSF051M21+ ACAATCCCTATAAGCCCTTACTATTTTTGGCCTAGGAAAGATGCCTGGGAGGAGCTAAAG
rJMFF012L20+ ACAATCCCTATAAGCCCTTACTATTTTTGGCCTAGGAAAGATGCCTGGGAGGAGCTAAAG
____________________________________________________________
consensus ACAATCCCTATAAGCCCTTACTATTTTTGGCCTAGGAAAGATGCCTGGGAGGAGCTAAAG
. : . : . : . : . : . :
JMSF051M21- GTGATGCTGGAGAGTAAGCCTTGGATATCCCAGAAACAGATGGTTATTCTGCTTAATCAG
rJMSF051M21+ GTGATGCTGGAGAGTAAGCCTTGGATATCCCAGAAACAGATGGTTATTCTGCTTAATCAG
rJMFF012L20+ GTGATGCTGGAGAGTAAGCCTTGGATATCCCAGAAACAGATGGTTATTCTGCTTAATCAG
____________________________________________________________
consensus GTGATGCTGGAGAGTAAGCCTTGGATATCCCAGAAACAGATGGTTATTCTGCTTAATCAG
. : . : . : . : . : . :
JMSF051M21- GCCACTGATATTATCAATCTATGGCAACAGAGTGGTGGCAACTTTGCATAATCTTAGCTT
rJMSF051M21+ GCCACTGATATTATCAATCTATGGCAACAGAGTGGTGGCAACTTTGCATAATCTTAGCTT
rJMFF012L20+ GCCACTGATATTATCAATCTATGGCAACAGAGTGGTGGCAACTTTGCATAATCTTAGCTT
____________________________________________________________
consensus GCCACTGATATTATCAATCTATGGCAACAGAGTGGTGGCAACTTTGCATAATCTTAGCTT
. : . : . : . : . : . :
JMSF051M21- TTCTTGTGCAGCTACT
rJMSF051M21+ TTCTTGTGCAGCTACTAGGTATAGTTTTCGCTGTAATCCCCCATTTTGTGAGGCCATCAT
rJMFF012L20+ TTCTTGTGCAGCTACTAGGTATAGTTTTCGCTGTAATCCCCCATTTTGTGAGGCCATCAT
____________________________________________________________
consensus TTCTTGTGCAGCTACTAGGTATAGTTTTCGCTGTAATCCCCCATTTTGTGAGGCCATCAT
. : . : . : . : . : . :
rJMSF051M21+ TGTGCTCAATCTGACATTTGTAATACCCTTGTAGATGTTGTTTTGATGTTTCAGTGAGAG
rJMFF012L20+ TGTGCTCAATCTGACATTTGTAATACCCTTGTAGATGTTGTTTTGATGTTTCAGTGAGAG
____________________________________________________________
consensus TGTGCTCAATCTGACATTTGTAATACCCTTGTAGATGTTGTTTTGATGTTTCAGTGAGAG
. : . : . : . : . : . :
rJMSF051M21+ AAGGATGTTTCGTTTTATCAAAGTTGCAAATTTTATTCGGTT
rJMFF012L20+ AAGGATGTTTCGTTTTATCAAAGTTGCAAATTTTATTCGGTTTGAGTTTTTAAGACATTG
____________________________________________________________
consensus AAGGATGTTTCGTTTTATCAAAGTTGCAAATTTTATTCGGTTTGAGTTTTTAAGACATTG