Contig 013656:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012H08Sequence510006114 (3)emb|CDO99147.1|9e-48unnamed protein product [Coffea canephora]432013656 (2)ref|XP_009615053.1|6e-08PREDICTED: auxin-responsive protein IAA4-like [Nicotiana tomentosiformis]
JMFF029L01Sequence486006114 (3)ref|XP_009612692.1|4e-43PREDICTED: auxin-responsive protein IAA4-like [Nicotiana tomentosiformis]412013656 (2)gb|AAD32142.1|AF123504_12e-19Nt-iaa2.3 deduced protein [Nicotiana tabacum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF029L01+ AGNTTTTAAAAGCCCTGGAANCCNTGTTTNAACTNTCCNTAGGTCA
                      ____________________________________________________________
consensus AGNTTTTAAAAGCCCTGGAANCCNTGTTTNAACTNTCCNTAGGTCA
 
. : . : . : . : . : . :
rJMFF029L01+ ATNCTTTGAGAGGGAAGGGTNTNAGGGNTNAGAATTTGNTCCTGNTTATGAAGACAAAGA
rJMFF012H08+ TGAAGACAAAGA
                      ____________________________________________________________
consensus ATNCTTTGAGAGGGAAGGGTNTNAGGGNTNAGAATTTGNTCCTGNTTATGAAGACAAAGA
 
. : . : . : . : . : . :
rJMFF029L01+ TGGNGNCTTGATGCTTGTTGGAGANGTTNCCTGGGNGANGTTTTTGTNATCATGCAAGAG
rJMFF012H08+ TGGNGNCTTGATGNTTGTTGGNGANGTTCCCTGGGNGANGTTTTTGTNATCATGCAAGAG
                      ____________________________________________________________
consensus TGGNGNCTTGATGCTTGTTGGAGANGTTCCCTGGGNGANGTTTTTGTNATCATGCAAGAG
 
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rJMFF029L01+ GGTGNGAATNATGAAGGGNTNAGAGACNAGAGGGNTGGGTTGTGGCNACTGAAAAGTTCC
rJMFF012H08+ GGTGNGAATNATGAAGGGNTNNGAGACNAGAGGGNTGGGTTGTGGCNANTGAAAAGTTCC
                      ____________________________________________________________
consensus GGTGNGAATNATGAAGGGNTNAGAGACNAGAGGGNTGGGTTGTGGCNACTGAAAAGTTCC
 
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rJMFF029L01+ CCCNATTNTGAGCAAAGNTNTCNGGNAAAGAGNGGNATNTTNAAGATTTTGTTTCAGGCA
rJMFF012H08+ CCCNATTNTGNGCAAAGNTNTCNGGNAAAGAGNGGNATNTTNAAGATTTTGTTTCAGGCA
                      ____________________________________________________________
consensus CCCNATTNTGAGCAAAGNTNTCNGGNAAAGAGNGGNATNTTNAAGATTTTGTTTCAGGCA
 
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rJMFF029L01+ GGCAANCTTGGGTTGTNGGAAGANGACAAGAATTTCANCCTNGTAGTTTTGGAAATTTTT
rJMFF012H08+ GGCAANCTTGGGTTGTTGGAAGANGACAAGAATTTCANCCTNGTAGTTTTGGAAATTTTT
                      ____________________________________________________________
consensus GGCAANCTTGGGTTGTTGGAAGANGACAAGAATTTCANCCTNGTAGTTTTGGAAATTTTT
 
. : . : . : . : . : . :
rJMFF029L01+ TTGTAACATCAAAAAACNCAGTTTNCCNGATTGG
rJMFF012H08+ TTGTAACATNAAAAAACNCAGTTTNCCNGATTGGNCTTNANCCCNGAANTTNATCCNGAA
                      ____________________________________________________________
consensus TTGTAACATCAAAAAACNCAGTTTNCCNGATTGGNCTTNANCCCNGAANTTNATCCNGAA
 
. : . : . : . : . : . :
rJMFF012H08+ GAAACCNGTTCCTGNGANGNTATTNGNTTACTTCANTTCATTTTTTTNTTTTTATTANGN
                      ____________________________________________________________
consensus GAAACCNGTTCCTGNGANGNTATTNGNTTACTTCANTTCATTTTTTTNTTTTTATTANGN
 
. : . : . : . : . : . :
rJMFF012H08+ AAANTAANGNGNTATTATCAGGAAAAAAAAAAACCATGGTGGTTTTCAAGATTCCTGTGA
                      ____________________________________________________________
consensus AAANTAANGNGNTATTATCAGGAAAAAAAAAAACCATGGTGGTTTTCAAGATTCCTGTGA