| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011C15 | Sequence | 516 | 010178 (2) | ref|XP_009783401.1| | 4e-08 | PREDICTED: probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Nic | 716 | 013647 (2) | ref|XP_009804376.1| | 3e-88 | PREDICTED: probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Nic |
| JMFN031G22 | Sequence | 381 | 013647 (2) | gb|ACL00683.2| | 8e-28 | 9-cis-epoxycarotenoid dioxygenase 2 [Solanum lycopersicum] | |||||
This contig is upended
. : . : . : . : . : . :
JMFN031G22+ GGTCATGAACAGAATTT
rJMFF011C15- TATTATTTGTTAAAAGGATATACATACATGCAACTGTTTGGTCATGAACAGAATTT
____________________________________________________________
consensus TATTATTTGTTAAAAGGATATACATACATGCAACTGTTTGGTCATGAACAGAATTT
. : . : . : . : . : . :
JMFN031G22+ ACAGAAACCAACGAACTGAGCTGCAAACTGCAACCTATTACACCTAACTACAATAAGCTT
rJMFF011C15- ACAGAAACCAACGAACTGAGCTGCAAACTGCAACCTATTACACCTAACTACAATAAGCTT
____________________________________________________________
consensus ACAGAAACCAACGAACTGAGCTGCAAACTGCAACCTATTACACCTAACTACAATAAGCTT
. : . : . : . : . : . :
JMFN031G22+ CATGCATGCGTGATTCCTTAAAACTCCAAAACTAAATCACAATACCTCCTAGATTCTGTG
rJMFF011C15- CATGNGTGCGTGATTCCTTAAAACTCCAAAACTAAATCACAATACCTCCTAGATTCTGTG
____________________________________________________________
consensus CATGCGTGCGTGATTCCTTAAAACTCCAAAACTAAATCACAATACCTCCTAGATTCTGTG
. : . : . : . : . : . :
JMFN031G22+ TCCATAATCTATCGCCCAGGAACAAACTGATAATAGTAAGGAGATATGTCATACTTGATT
rJMFF011C15- TCCATAATCTATCGCCCAGGAACAAACTGATAATAGTAAGGAGATATGTCATACTTGATT
____________________________________________________________
consensus TCCATAATCTATCGCCCAGGAACAAACTGATAATAGTAAGGAGATATGTCATACTTGATT
. : . : . : . : . : . :
JMFN031G22+ TTGCAGGTCGTATGAAGTGATGAAAGTCCCATGAAAGCCATAGGGCACTCTTGAAGGAAG
rJMFF011C15- TTGCAGGTCGTATGAAGTGATGAAAGTCCCATGAAAGCCATAGGGCACTCTTGAAGGAAG
____________________________________________________________
consensus TTGCAGGTCGTATGAAGTGATGAAAGTCCCATGAAAGCCATAGGGCACTCTTGAAGGAAG
. : . : . : . : . : . :
JMFN031G22+ CTTGATGGTGGCCAACAACTCCAAGTTAATGGCATTCACAATTTGCAGCTCAGATTTCCA
rJMFF011C15- CTTGATGGTGGCCAACAACTCCAAGTTAATGGCATTCACAATTTGCAGCTCAGATTTCCA
____________________________________________________________
consensus CTTGATGGTGGCCAACAACTCCAAGTTAATGGCATTCACAATTTGCAGCTCAGATTTCCA
. : . : . : . : . : . :
JMFN031G22+ TGTCTTCTCGTCATGTACAAATGAAAGAATGTGTCCATCGTCTTCCTTCTCTGAATTCGG
rJMFF011C15- TGTCTTCTCGTCATGTACAAATGAAAGAATGTGTCCATCGTCTTCCTTCTCTGAATTCGG
____________________________________________________________
consensus TGTCTTCTCGTCATGTACAAATGAAAGAATGTGTCCATCGTCTTCCTTCTCTGAATTCGG
. : . : . : . : . : . :
JMFN031G22+ ATTC
rJMFF011C15- ATTCCTGGGCACGAAAAATGGCTCTCCTCCATATTTCCCATCTCCATACATAAACTTCTG
____________________________________________________________
consensus ATTCCTGGGCACGAAAAATGGCTCTCCTCCATATTTCCCATCTCCATACATAAACTTCTG
. : . : . : . : . : . :
rJMFF011C15- CATTTCTCCGGTTGAGAGGTCCACTTTAGCAAAACCAGAAACTTTAGGCCATGGCTCCGC
____________________________________________________________
consensus CATTTCTCCGGTTGAGAGGTCCACTTTAGCAAAACCAGAAACTTTAGGCCATGGCTCCGC
. : . : . : . : . : . :
rJMFF011C15- AATCGCAAGATATGCATACTGGGTTTTCCGGCCCAGCAGGTTCCGGTTCACCATTCCGGC
____________________________________________________________
consensus AATCGCAAGATATGCATACTGGGTTTTCCGGCCCAGCAGGTTCCGGTTCACCATTCCGGC
. : . : . : . : . : . :
rJMFF011C15- TTCTAAGTTCACCTGCTGATCTGTAGCCGGAATAATTGGCCTCTTCGTCGACTCCCCGGT
____________________________________________________________
consensus TTCTAAGTTCACCTGCTGATCTGTAGCCGGAATAATTGGCCTCTTCGTCGACTCCCCGGT
. : . : . : . : . : . :
rJMFF011C15- TTTCAGATTTAGCCGGATTTCCGATAGGATGCTCTTCAGATTCTCTTCGCATTCGTTGAA
____________________________________________________________
consensus TTTCAGATTTAGCCGGATTTCCGATAGGATGCTCTTCAGATTCTCTTCGCATTCGTTGAA