Contig 013642:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF031E18+                                                           TTTCTGNTTCT
rJMSF018O16+                       TTCTCTCTGNGAATGCCCTCTCCCCTTTCCCATCCATTTCTGGTTCT
                      ____________________________________________________________
consensus                          TTCTCTCTGNGAATGCCCTCTCCCCTTTCCCATCCATTTCTGGTTCT
 
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rJMSF031E18+          CTTATTTCTCATNGTATGCTAGTATCGTACAAATTTAATATTCTAGGTTTATTCTCTGGC
rJMSF018O16+          CTTATTTCTCATNGTATGCTAGTATCGTACAAATTTAATATTCTAGGTTTATTCTCTGGC
                      ____________________________________________________________
consensus             CTTATTTCTCATNGTATGCTAGTATCGTACAAATTTAATATTCTAGGTTTATTCTCTGGC
 
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rJMSF031E18+          TTGAGACCTCATCATACTAGGAAAAGTAGCTCTTCTCGTGCTAGTGTTAGGTT-CGGTGT
rJMSF018O16+          TTGAGACCTCATCATACTAGGAAAAGTAGCTCTTCTCGTGCTAGTGTTAGGTT-CGGTGT
rJMFF010B01+                           TAGGAAAAGTAGCTCTTCTCGTGCTAGTGTTAGGTTCCGGTGT
                      ____________________________________________________________
consensus             TTGAGACCTCATCATACTAGGAAAAGTAGCTCTTCTCGTGCTAGTGTTAGGTT-CGGTGT
 
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rJMSF031E18+          CTCATACTCTTGCCATGTACTCAAACTGTGGTGGCTACTATTTCAGATTTAGGAAGTCGC
rJMSF018O16+          CTCATACTCTTGCCATGTACTCAAACTGTGGTGGCTACTATTTCAGATTTAGGAAGTCGC
rJMFF010B01+          CTCATACTCTTGCCATGTACTCAANCTGTGGTGGCTACTATTTCAGATTTAGGAAGTCGC
                      ____________________________________________________________
consensus             CTCATACTCTTGCCATGTACTCAAACTGTGGTGGCTACTATTTCAGATTTAGGAAGTCGC
 
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rJMSF031E18+          AAGGTAGGCATTTAGTGCTCACTTTGGTTCGAGCTTTTATTTCTTTTAAACAAGCTT-CT
rJMSF018O16+          AAGGTAGGCATTTAGTGCTCACTTTGGTTCGAGCTTTTATTTCTTTTAAACAAGCTT-CT
rJMFF010B01+          AAGGTAGGCATTTAGTGCTCACTTTGGTTCGAGCTTTTATTTCTTTTAAACAAGCTTCCN
                      ____________________________________________________________
consensus             AAGGTAGGCATTTAGTGCTCACTTTGGTTCGAGCTTTTATTTCTTTTAAACAAGCTT-CT
 
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rJMSF031E18+          GGGAGATAATTTTTGGAAGATCTCTCTCTCTTGTTGAACGTGATTAGGTAGAACACTTTC
rJMSF018O16+          GGGAGATAATTTTTGGAAGATCTCTCTCTCTTGTTGAACGTGATTAGGTAGAACACTTTC
rJMFF010B01+          GGGAGATAATTTNTGGAAGATCTCTCTCTCTTGTTGAACGTGATTAGGTAGAACACTTTC
                      ____________________________________________________________
consensus             GGGAGATAATTTTTGGAAGATCTCTCTCTCTTGTTGAACGTGATTAGGTAGAACACTTTC
 
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rJMSF031E18+          TGGAATGTGAAAGATGGATTTCATTAGAATATTACTCTCCTTACCCCCTCTTTATTAGAA
rJMSF018O16+          TGGAATGTGAAAGATGGATTTCATTAGAATATTACTCTCCTTACCCCCTCTTTATTAGAA
rJMFF010B01+          TGGAATGTGAAAGATGGATTTCATTAGAATATTACTCTCCTTACCCCCTCTTTATTAGAA
                      ____________________________________________________________
consensus             TGGAATGTGAAAGATGGATTTCATTAGAATATTACTCTCCTTACCCCCTCTTTATTAGAA
 
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rJMSF031E18+          CTCAACTGTCCTCAATTTGCTATGGTCTTCTCTGGTGTTCGATGTGCTAGGAGGATCGGC
rJMSF018O16+          CTCAACTGTCCTCAATTTGCTATGGTCTTCTCTGGTGTTCGATGTGCTAGGAGGATCGGC
rJMFF010B01+          CTCAACTGTCCTCAATTTGCTATGGTCTTCTNTGGTGTTCGATGTGCTAGGAGGATCGGC
                      ____________________________________________________________
consensus             CTCAACTGTCCTCAATTTGCTATGGTCTTCTCTGGTGTTCGATGTGCTAGGAGGATCGGC
 
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rJMSF031E18+          TAATATCAAGTATTTTCCATACTTTTGCTCTATAGTCTTACTTTCCAGGTGAGCTACAAA
rJMSF018O16+          TAATATCAAGTATTTTCCATACTTTTGCTCTATAGTCTTACTTTCCAGGTGAGCTACAAA
rJMFF010B01+          TAATATCAAGTATTTTCCATACTTTTGCTCTATAGTCTTACTTTCCAGGTGAACTACAAA
                      ____________________________________________________________
consensus             TAATATCAAGTATTTTCCATACTTTTGCTCTATAGTCTTACTTTCCAGGTGAGCTACAAA
 
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rJMSF031E18+          GGTCTGGGGGTTGGGAGCCCCTGCAGATTCCGGGGTAGGTGATCTGCTTCGTTTTTCCTT
rJMSF018O16+          GGTCTGGGGGTTGGGAGCCCCTGCAGATTCCGGGGTAGGTGATCTGCTTCGTTTTTCCTT
rJMFF010B01+          GGTCTGGGGGTTGGGAGCCCCTGCAGATTCCGGGGTAGGTGATCTGCTTCGTTTTTCCTT
                      ____________________________________________________________
consensus             GGTCTGGGGGTTGGGAGCCCCTGCAGATTCCGGGGTAGGTGATCTGCTTCGTTTTTCCTT
 
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rJMSF031E18+          TTCTATTCCCGATTGCAACAATGTAGTGTCAAGGAACTTATAAGGTGGTATTGCATACAT
rJMSF018O16+          TTCTATTCCCGATTGCAACAATGTAGTGTCAAGGAACTTATAAGGTGGTATTGCATACAT
rJMFF010B01+          TTCTATTCCCGATTGCAACAATGTAGTGTCAAGGAACTTATAAGGTGGTATTGCATACAT
                      ____________________________________________________________
consensus             TTCTATTCCCGATTGCAACAATGTAGTGTCAAGGAACTTATAAGGTGGTATTGCATACAT
 
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rJMSF031E18+          TTTTATTTGTTAGGAGGCATGTAGAATTAGGTGTAGTCGTTCATATTAGTTTGTGATTAA
rJMSF018O16+          TTTTATTTGTTAGGAGGCATGTAGAATTAGGTGTAGTCGTTCATATTAGTTTGTGATTAA
rJMFF010B01+          TTTTANTTGTTAGGAGGCATGTAGAATTAGGTGTAGTCGTTCATATTAGTTTGTGATTAA
                      ____________________________________________________________
consensus             TTTTATTTGTTAGGAGGCATGTAGAATTAGGTGTAGTCGTTCATATTAGTTTGTGATTAA
 
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rJMSF031E18+          TTTTTCATCGATTGCTTGACTTCGAAAGTGCCTGATGCTTT                   
rJMSF018O16+          TTTTTCATCGATTGCTTGACTTCGAAAGTGCCTGATGCTTT                   
rJMFF010B01+          TTTTTCATCGATTGCTTGACTTCGAAAGTGCCTGATGCTTTTGTATTCAAGACTAGCAAA
                      ____________________________________________________________
consensus             TTTTTCATCGATTGCTTGACTTCGAAAGTGCCTGATGCTTTTGTATTCAAGACTAGCAAA
 
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rJMFF010B01+          CTCAGCGGAGATGGATTTTTGTTTTGTTTTGTTTTTTTGGGGTCTTTATGTGTTATGTAT
                      ____________________________________________________________
consensus             CTCAGCGGAGATGGATTTTTGTTTTGTTTTGTTTTTTTGGGGTCTTTATGTGTTATGTAT
 
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rJMFF010B01+          GCATCTATANNTGATGGGATACTTGAATTTTCTTACATTAATGTCAATGACAGGCACTCT
                      ____________________________________________________________
consensus             GCATCTATANNTGATGGGATACTTGAATTTTCTTACATTAATGTCAATGACAGGCACTCT