| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009J13 | Sequence | 529 | 000041 (4) | gb|AID47022.1| | 6e-68 | glycine betaine aldehyde dehydrogenase, partial [Ipomoea batatas] | 597 | 013639 (4) | ref|XP_009608860.1| | 1e-82 | PREDICTED: betaine aldehyde dehydrogenase, chloroplastic-like [Nicotiana toment |
| JMFF024H03 | Sequence | 506 | 000041 (4) | gb|AID47022.1| | 4e-63 | glycine betaine aldehyde dehydrogenase, partial [Ipomoea batatas] | 756 | 013639 (4) | ref|XP_009608860.1| | 2e-116 | PREDICTED: betaine aldehyde dehydrogenase, chloroplastic-like [Nicotiana toment |
| JMFF028I10 | Sequence | 529 | 000041 (4) | gb|AID47022.1| | 2e-67 | glycine betaine aldehyde dehydrogenase, partial [Ipomoea batatas] | 733 | 013639 (4) | ref|XP_009608860.1| | 1e-110 | PREDICTED: betaine aldehyde dehydrogenase, chloroplastic-like [Nicotiana toment |
| JMSF047O03 | Sequence | 703 | 000041 (4) | ref|XP_009776732.1| | 1e-109 | PREDICTED: betaine aldehyde dehydrogenase, chloroplastic-like isoform X2 [Nicot | 725 | 013639 (4) | gb|AII99844.1| | 1e-115 | aminoaldehyde dehydrogenase 2 [Nicotiana tabacum] |
This contig is upended
. : . : . : . : . : . :
rJMSF047O03+ GAAAGCATTGCTGCTGGATTCGTGGACAGGCTTTTGGC
rJMFF024H03+ TTGCAGGAAAGCATTGCTGCTGGATTCGTGGACAGGCTTTTGGC
rJMFF028I10+ TCGTGGACAGGCTTTTGGC
____________________________________________________________
consensus TTGCAGGAAAGCATTGCTGCTGGATTCGTGGACAGGCTTTTGGC
. : . : . : . : . : . :
rJMSF047O03+ ATGGACCAAAAATATTAAAATATCAGATCCCTTAGAGGAGGGCTGTAAGCTTGGTCCTAT
rJMFF024H03+ ATGGACCAAAAATATTAAAATATCAGATCCCTTAGAGGAGGGCTGTAAGCTTGGTCCTAT
rJMFF028I10+ ATGGACCAAAAATATTAAAATATCAGATCCCTTAGAGGAGGGCTGTAAGCTTGGTCCTAT
____________________________________________________________
consensus ATGGACCAAAAATATTAAAATATCAGATCCCTTAGAGGAGGGCTGTAAGCTTGGTCCTAT
. : . : . : . : . : . :
rJMSF047O03+ TGTTAGTAAGGCTCAGTATGAGAAGGTGATGAATTGCATATCAACTGCCAAAAGTGAAGG
rJMFF024H03+ TGTTAGTAAGGCTCAGTATGAGAAGGTGATGAATTGCATATCAACTGCCAAAAGTGAAGG
rJMFF028I10+ TGTTAGTAAGGCTCAGTATGAGAAGGTGATGAATTGCATATCAACTGCCAAAAGTGAAGG
____________________________________________________________
consensus TGTTAGTAAGGCTCAGTATGAGAAGGTGATGAATTGCATATCAACTGCCAAAAGTGAAGG
. : . : . : . : . : . :
rJMSF047O03+ TGCTACCATTTTGTATGGTGGAAAGCGCCCTGAGCACTTGCAAAAAGGCTATTATGTTGA
rJMFF024H03+ TGCTACCATTTTGTATGGTGGAAAGCGCCCTGAGCACTTGCAAAAAGGCTATTATGTTGA
rJMFF028I10+ TGCTACCATTTTGTATGGTGGAAAGCGCCCTGAGCACTTGCAAAAAGGCTATTATGTTGA
rJMFF009J13+ TACCATTTTGTATGGTGGAAAGCGCCNTGAGCACTTGCAAAAAGGCTATTATGTTGA
____________________________________________________________
consensus TGCTACCATTTTGTATGGTGGAAAGCGCCCTGAGCACTTGCAAAAAGGCTATTATGTTGA
. : . : . : . : . : . :
rJMSF047O03+ ACCAACAATCATTACTGATGTGAATACCTCCATGCAAATCTGGAAAGAAGAAGTATTTGG
rJMFF024H03+ ACCAACAATCATTACTGATGTGAATACCTCCATGCAAATCTGGAAAGAAGAAGTATTTGG
rJMFF028I10+ ACCAACAATCATTACTGATGTGAATACCTCCATGCAAATCTGGAAAGAAGAAGTATTTGG
rJMFF009J13+ ACCAACAATCATTACTGATGTGAATACCTCCATGCAAATCTGGAAAGAAGAAGTATTTGG
____________________________________________________________
consensus ACCAACAATCATTACTGATGTGAATACCTCCATGCAAATCTGGAAAGAAGAAGTATTTGG
. : . : . : . : . : . :
rJMSF047O03+ ACCTGTTCTTTGCATCAAGACATTTAAGACAGAAAAGGAAGCCATTGAACTAGCCAATGA
rJMFF024H03+ ACCTGTTCTTTGCATCAAGACATTTAAGACAGAAAAGGAAGCCATTGAACTAGCCAATGA
rJMFF028I10+ ACCTGTTCTTTGCATCAAGACATTTAAGACAGAAAAGGAAGCCATTGAACTAGCCAATGA
rJMFF009J13+ ACCTGTTCTTTGCATCAAGACATTTAAGACAGAAAAGGAAGCCATTGAACTAGCCAATGA
____________________________________________________________
consensus ACCTGTTCTTTGCATCAAGACATTTAAGACAGAAAAGGAAGCCATTGAACTAGCCAATGA
. : . : . : . : . : . :
rJMSF047O03+ CACTGAGTATGGTTTAGCTGCTGCTGTCTTGTCAAAAGATCTTGAAAGATGTGAGCGTAT
rJMFF024H03+ CACTGAGTATGGTTTAGCTGCTGCTGTCTTGTCAAAAGATCTTGAAAGATGTGAGCGTAT
rJMFF028I10+ CANTGAGTATGGTTTAGCTGCTGCTGTCTTGTCAAAAGATCTTGAAAGATGTGAGCGTAT
rJMFF009J13+ CACTGAGTATGGTTTAGCTGCTGCTGTCTTGTCAAAAGATCTTGAAAGATGTGAGCGTAT
____________________________________________________________
consensus CACTGAGTATGGTTTAGCTGCTGCTGTCTTGTCAAAAGATCTTGAAAGATGTGAGCGTAT
. : . : . : . : . : . :
rJMSF047O03+ GGCAAAGGCTTTTCAGACAGGGGCAGTCTGGGTCAACTGCTCACAGCCATGCTTTTGGCA
rJMFF024H03+ GGCAAAGGCTTTTCAGACAGGGGCAGTCTGGGTCAACTGCTCACAGCCATGCTTTTGGCA
rJMFF028I10+ GGCAAAGGCTTTTCAGACAGGGGCAGTCTGGGTCANCTGCTCACAGCCATGCTTTTGGCA
rJMFF009J13+ GGCAAAGGCTTTTCAGACAGGGGCAGTCTGGGTCAACTGCTCACAGCCATGCTTTTGGCA
____________________________________________________________
consensus GGCAAAGGCTTTTCAGACAGGGGCAGTCTGGGTCAACTGCTCACAGCCATGCTTTTGGCA
. : . : . : . : . : . :
rJMSF047O03+ GCCACCATGGGGAGGCAAGAAGCGTAGTGGTTTTGGACGTGAATTAGGGGAATGGGGACT
rJMFF024H03+ GCCACCATGGGGAGGCAAGAAGCGTAGTGGTTTTGGACGTGAATTAGGGGAATGGGGACT
rJMFF028I10+ GCCACCATGGGGAGGCAAGAAGCGTAGTGGTTTTGGACGTGAATTAGGGGAATGGGGACT
rJMFF009J13+ GCCACCATGGGGAGGCAAGAAGCGTAGTGGTTTTGGACGTGAATTAGGGGAATGGGGACT
____________________________________________________________
consensus GCCACCATGGGGAGGCAAGAAGCGTAGTGGTTTTGGACGTGAATTAGGGGAATGGGGACT
. : . : . : . : . : . :
rJMSF047O03+ AGAAAGCTTCTTCAATATCAAGCAGATTACGACATATGTTTCCGATGAACCTTGGGGTTG
rJMFF024H03+ AGAAAGCTTCTTCAATATCAAGCAGATTACGACATATGTTTCCGATGAACCTTGGGGTTG
rJMFF028I10+ AGAAAGCTTCTTCAATATCAAGCAGATTACGACATATGTTTCCGATGAACCTTGGGGTTG
rJMFF009J13+ AGAAAGCTTCTTCAATATCAAGCAGATTACGACATATGTTTCCGATGAACCTTGGGGTTG
____________________________________________________________
consensus AGAAAGCTTCTTCAATATCAAGCAGATTACGACATATGTTTCCGATGAACCTTGGGGTTG
. : . : . : . : . : . :
rJMSF047O03+ GTACAAGCCTCCTTCGAAGTAAAGAAACGAAGCTGATAGTGATGGAACTTATGTTGATGG
rJMFF024H03+ GTACAAGCCTCCTTCGAAGTAAAGAAACGAAGCTGATAGTGATGGAACTTATGTTGATGG
rJMFF028I10+ GTACAAGCCTCCTTCGAAGTAAAGAAACGAAGCTGATAGTGATGGAACTTATGTTGATGG
rJMFF009J13+ GTACAAGCCTCCTTCGAAGTAAAGAAACGAAGCTGATAGTGATGGAACTTATGTTGATGG
____________________________________________________________
consensus GTACAAGCCTCCTTCGAAGTAAAGAAACGAAGCTGATAGTGATGGAACTTATGTTGATGG
. : . : . : . : . : . :
rJMSF047O03+ AATGCTATGTGCAATTGTCTTAGAGAATAATAAGGCATTTAGACCACTGCACAACTTGAA
rJMFF024H03+ AATGCTATGTGCAATTGTCTTAGAGAATAATAAGGCATTTAGACCACTGCACAACTTGAA
rJMFF028I10+ AATGCTATGTGCAATTGTCTTAGAGAATAATAAGGCATTTAGACCACTGCACAACTTGAA
rJMFF009J13+ AATGCTATGTGCAATTGTCTTAGAGAATAATAAGGCATTTAGACCACTGCACAACTTGAA
____________________________________________________________
consensus AATGCTATGTGCAATTGTCTTAGAGAATAATAAGGCATTTAGACCACTGCACAACTTGAA
. : . : . : . : . : . :
rJMSF047O03+ CAATGGCTTGTAACTAGTCGAACCTTA
rJMFF024H03+ CAATGGCTTGTAACTAGTCGAACCTTATTACTTATCTCCTAGGGAAAAAGAA
rJMFF028I10+ CAATGGCTTGTAACTAGTCGAACCTTATTACTTATCTCCTAGGGAAAAAGAA
rJMFF009J13+ CAATGGCTTGTAACTAGTCGAACCTTATTACTTATCTCCTAGGGAAAAAGAAATTAATGA
____________________________________________________________
consensus CAATGGCTTGTAACTAGTCGAACCTTATTACTTATCTCCTAGGGAAAAAGAAATTAATGA