| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008A04 | Sequence | 571 | 005321 (4) | ref|XP_007025742.1| | 6e-32 | Uncharacterized protein TCM_029952 [Theobroma cacao] gb|EOY28364.1| Uncharacteri | 725 | 013627 (4) | ref|XP_009766485.1| | 262 | PREDICTED: uncharacterized protein LOC104217853 [Nicotiana sylvestris] |
| JMFF014F24 | Sequence | 591 | 005321 (4) | gb|KCW74645.1| | 2e-32 | hypothetical protein EUGRSUZ_E03369 [Eucalyptus grandis] | 828 | 013627 (4) | ref|XP_004232824.1| | 339 | PREDICTED: uncharacterized protein LOC101260688 [Solanum lycopersicum] ref|XP_01 |
| JMSF027P24 | Sequence | 626 | 005321 (4) | ref|XP_007025742.1| | 2e-33 | Uncharacterized protein TCM_029952 [Theobroma cacao] gb|EOY28364.1| Uncharacteri | 692 | 013627 (4) | ref|XP_009766485.1| | 242 | PREDICTED: uncharacterized protein LOC104217853 [Nicotiana sylvestris] |
| JMSF052M11 | Sequence | 655 | 005321 (4) | gb|KCW74645.1| | 2e-31 | hypothetical protein EUGRSUZ_E03369 [Eucalyptus grandis] | 927 | 013627 (4) | ref|XP_011096284.1| | 464 | PREDICTED: uncharacterized protein LOC105175522 [Sesamum indicum] ref|XP_0110962 |
This contig is upended
. : . : . : . : . : . :
rJMSF052M11+ AATTAAACAGAAGGGATAATGTTAACCAGATTGCTCAAAAGTTT
____________________________________________________________
consensus AATTAAACAGAAGGGATAATGTTAACCAGATTGCTCAAAAGTTT
. : . : . : . : . : . :
rJMSF052M11+ CTTCCAGAGAATTTCACAATTATTTTGTTCCATTATGATGGCAATGTGGATGGCTGGTGG
____________________________________________________________
consensus CTTCCAGAGAATTTCACAATTATTTTGTTCCATTATGATGGCAATGTGGATGGCTGGTGG
. : . : . : . : . : . :
rJMSF052M11+ GACCTTGCATGGACTAAGAAGGCCGTCCATATAGTTGCTCACAATCAAACAAAATGGTGG
rJMFF014F24+ CCATATAGTTGCTCACAATCAANCAAAATGGTGG
____________________________________________________________
consensus GACCTTGCATGGACTAAGAAGGCCGTCCATATAGTTGCTCACAATCAAACAAAATGGTGG
. : . : . : . : . : . :
rJMSF052M11+ TTTGCAAAGCGTTTTCTGCATCCAGCTGTTGTATCTATTTATGACTACATTTTCC-TATG
rJMFF014F24+ TTTGCAAAGCGTTTTCTGCATCCAGCTGTTGTATCTATTTATGACTACATTTTCCTTATG
____________________________________________________________
consensus TTTGCAAAGCGTTTTCTGCATCCAGCTGTTGTATCTATTTATGACTACATTTTCCTTATG
. : . : . : . : . : . :
rJMSF052M11+ GGATGAGGATTTGGGTGTCAAGAATTTTCATCCTGGAAGGTACCTTGGAATTGTAAAGTC
rJMFF014F24+ GGATGAGGATTTGGGTGTCAAGAATTTTCATCCTGGAAGGTACCTTGGAATTGTAAAGTC
____________________________________________________________
consensus GGATGAGGATTTGGGTGTCAAGAATTTTCATCCTGGAAGGTACCTTGGAATTGTAAAGTC
. : . : . : . : . : . :
rJMSF052M11+ AGCAGGACTGGAGATATCTCAGCCAGCTCTAGACCCAAATTCGACTGGTATACACCACAG
rJMFF014F24+ AGCAGGACTGGAGATATCTCAGCCAGCTCTAGACCCAAATTCGACTGGTATACACCACAG
rJMFF008A04+ CACAG
____________________________________________________________
consensus AGCAGGACTGGAGATATCTCAGCCAGCTCTAGACCCAAATTCGACTGGTATACACCACAG
. : . : . : . : . : . :
rJMSF052M11+ AATTACCATACGAAACAGAGCAAAGAAGTTTCACAGAAAAGTGTATGAAGATAGGGGCAG
rJMFF014F24+ AATTACCATACGAAACAGAGCAAAGAAGTTTCACAGAAAAGTGTATGAAGATAGGGGCAG
rJMSF027P24+ AAGTTTCNCAGAAAAGTGTATGAAGATAGGGGCAG
rJMFF008A04+ AATTACCATACGAAACAGAGCAAAGAAGTTTCACAGAAAAGTGTATGAAGATAGGGGCAG
____________________________________________________________
consensus AATTACCATACGAAACAGAGCAAAGAAGTTTCACAGAAAAGTGTATGAAGATAGGGGCAG
. : . : . : . : . : . :
rJMSF052M11+ TACAAAATGTTCAGATGAAAGTGAAGGCCCTCCATGTAGTGGATTCGTGGAAGGAATGGC
rJMFF014F24+ TACAAAATGTTCAGATGAAAGTGAAGGCCCTCCATGTAGTGGATTCGTGGAAGGAATGGC
rJMSF027P24+ TACAAAATGTTCAGATGAAAGTGAAGGCCCTCCATGTAGTGGATTCGTGGAAGGAATGGC
rJMFF008A04+ TACAAAATGTTCAGATGAAAGTGAAGGCCCTCCATGTAGTGGATTCGTGGAAGGAATGGC
____________________________________________________________
consensus TACAAAATGTTCAGATGAAAGTGAAGGCCCTCCATGTAGTGGATTCGTGGAAGGAATGGC
. : . : . : . : . : . :
rJMSF052M11+ TCCAGTATTTTCAAGATCTGCATGGCGTTGTGCCTGGCATCTTATTCAGAATGATCTTGT
rJMFF014F24+ TCCAGTATTTTCAAGATCTGCATGGCGTTGTGCCTGGCATCTTATTCAGAATGATCTTGT
rJMSF027P24+ TCCAGTATTTTCAAGATCTGCATGGCGTTGTGCCTGGCATCTTATTCAGAATGATCTTGT
rJMFF008A04+ TCCAGTATTTTCAAGATCTGCATGGCGTTGTGCCTGGCATCTTATTCAGAATGATCTTGT
____________________________________________________________
consensus TCCAGTATTTTCAAGATCTGCATGGCGTTGTGCCTGGCATCTTATTCAGAATGATCTTGT
. : . : . : . : . : . :
rJMSF052M11+ TCATGGATGGGGAGTGGACATGAAGCTTGGTTATTGTGCACAGGGGGATCGGACGAAAAA
rJMFF014F24+ TCATGGATGGGGAGTGGACATGAAGCTTGGTTATTGTGCACAGGGGGATCGGACGAAAAA
rJMSF027P24+ TCATGGATGGGGAGTGGACATGAAGCTTGGTTATTGTGCACAGGGGGATCGGACGAAAAA
rJMFF008A04+ TCATGGATGGGGAGTGGACATGAAGCTTGGTTATTGTGCACAGGGGGATCGGACGAAAAA
____________________________________________________________
consensus TCATGGATGGGGAGTGGACATGAAGCTTGGTTATTGTGCACAGGGGGATCGGACGAAAAA
. : . : . : . : . : . :
rJMSF052M11+ GGTGGGAGTAGTTGATGGTGAATATATAGTACACCAGAGCATTCAAACTTTGGGTGGGGC
rJMFF014F24+ GGTGGGAGTAGTTGATGGTGAATATATAGTACACCAGAGCATTCAAACTTTGGGTGGGGC
rJMSF027P24+ GGTGGGAGTAGTTGATGGTGAATATATAGTACACCAGAGCATTCAAACTTTGGGTGGGGC
rJMFF008A04+ GGTGGGAGTAGTTGATGGTGAATATATAGTACACCAGAGCATTCAAACTTTGGGTGGGGC
____________________________________________________________
consensus GGTGGGAGTAGTTGATGGTGAATATATAGTACACCAGAGCATTCAAACTTTGGGTGGGGC
. : . : . : . : . : . :
rJMSF052M11+ ATCTCAGAAAAAGGCTTCAAAGAGTCAAGAGTCGATCAAGAGGAATCCCGTTGATGCAAG
rJMFF014F24+ ATCTCAGAAAAAGGCTTCAAAGAGTCAAGAGTCGATCAAGAGGAATCCCGTTGATGCAAG
rJMSF027P24+ ATCTCAGAAAAAGGCTTCAAAGAGTCAAGAGTCGATCAAGAGGAATCCCGTTGATGCAAG
rJMFF008A04+ ATCTCAGAAAAAGGCTTCAAAGAGTCAAGAGTCGATCAAGAGGAATCCCGTTGATGCAAG
____________________________________________________________
consensus ATCTCAGAAAAAGGCTTCAAAGAGTCAAGAGTCGATCAAGAGGAATCCCGTTGATGCAAG
. : . : . : . : . : . :
rJMSF052M11+ ATACGAGATACGGAGGCAATCAGCGTACGAGCTGCAAACATTCAAAGATCGATGGGATCG
rJMFF014F24+ ATACGAGATACGGAGGCAATCAGCGTACGAGCTGCAAACATTCAAAGATCGATGGGATCG
rJMSF027P24+ ATACGAGATACGGAGGCAATCAGCGTACGAGCTGCAAACACTCAAAGATCGATGGGATCG
rJMFF008A04+ ATACGAGATACGGAGGCAATCAGCGTACGAGCTGCAAACATTCAAAGATCGATGGGATCG
____________________________________________________________
consensus ATACGAGATACGGAGGCAATCAGCGTACGAGCTGCAAACATTCAAAGATCGATGGGATCG
. : . : . : . : . : . :
rJMSF052M11+ AGCTGTGGAGGAGGACAAGAACTGGGTCGACCCATACAAAGAAACCCGGAGAATCAAGTT
rJMFF014F24+ AGCTGTGGAGGAGGACAAGAACTGGGTCGACCCATACAAAGAAACCCGGAGAATCAAGTT
rJMSF027P24+ AGCTGTGGAGGAGGACAAGAACTGGGTCGACCCATACAAAGAAACCCGGAGAATCAAGTT
rJMFF008A04+ AGCTGTGGAGGAGGACAAGAACTGGGTCGACCCATACAAAGAAACCCGGAGAATCAAGTT
____________________________________________________________
consensus AGCTGTGGAGGAGGACAAGAACTGGGTCGACCCATACAAAGAAACCCGGAGAATCAAGTT
. : . : . : . : . : . :
rJMSF052M11+ GCGCCGCAACCATAAGCGGCCGCATTTGAATGTAGTGAACTGATCAACAGCAATCCAGGA
rJMFF014F24+ GCGCCGCAACCATAAGCGGCCGCATTTGAATGTAGTGAACTGATCAACAGCAATCCAGGA
rJMSF027P24+ GCGCCGCAACCATAAGCGGCCGCATTTGAATGTAGTGAACTGATCAACAGCAATCCAGGA
rJMFF008A04+ GCGCCGCAACCATAAGCGGCCGCATTTGAATGTAGTGAACTGATCAACAGCAATCCAGGA
____________________________________________________________
consensus GCGCCGCAACCATAAGCGGCCGCATTTGAATGTAGTGAACTGATCAACAGCAATCCAGGA
. : . : . : . : . : . :
rJMSF052M11+ AGAACTGTAAGTCCCCTTTATGCATCAATTCCTTGTAATATCTT
rJMFF014F24+ AGAACTGTAAGTCCCCTTTATGCATCAATTCCTTGTAATATCTTGTAAGCCTTGTAGAAG
rJMSF027P24+ AGAACTGTAAGTCCCCTTTATGCATCAATTCCTTGTAATATCTTGTAAGCCTTGTAGAAG
rJMFF008A04+ AGAACTGTAAGTCCCCTTTATGCATCAATTCCTTGTAATATCTTGTAAGCCTTGTAGAAG
____________________________________________________________
consensus AGAACTGTAAGTCCCCTTTATGCATCAATTCCTTGTAATATCTTGTAAGCCTTGTAGAAG
. : . : . : . : . : . :
rJMFF014F24+ AACTATACATTATG
rJMSF027P24+ AACTATACATTATGGTGTTCATTATTTCTCATATTTTGCACCAACGCCTATGTGATCGAG
rJMFF008A04+ AACTATACATTATGGTGTTCATTATTTCTCATATTTTGCACCAACGCCTATGTGATCGAG
____________________________________________________________
consensus AACTATACATTATGGTGTTCATTATTTCTCATATTTTGCACCAACGCCTATGTGATCGAG
. : . : . : . : . : . :
rJMSF027P24+ TTGGTATTCAATTCGCTTTATGCATCTTGGGAATGCAATTCCCGGGAATGGGAAGAA
rJMFF008A04+ TTGGTATTCAATTCGCTTTATGCATCTTGGGAATGCAATTCCCGGGAATGGGAAGAACTA
____________________________________________________________
consensus TTGGTATTCAATTCGCTTTATGCATCTTGGGAATGCAATTCCCGGGAATGGGAAGAACTA