Contig 013617:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005L17Sequence504013617 (4)ref|XP_009591109.1|7e-21PREDICTED: signal recognition particle 14 kDa protein [Nicotiana tomentosiformi607013617 (4)ref|XP_009591109.1|5e-23PREDICTED: signal recognition particle 14 kDa protein [Nicotiana tomentosiformi
JMFF028C19Sequence340013617 (4)
JMFF032B15Sequence516013617 (4)ref|XP_009591109.1|7e-28PREDICTED: signal recognition particle 14 kDa protein [Nicotiana tomentosiformi613022353ref|XP_009591109.1|2e-27PREDICTED: signal recognition particle 14 kDa protein [Nicotiana tomentosiformi

Alignment

This contig is upended


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JMFF032B15-               GCACTCTACGGTCTTCTTCCCGGAAAAAATTTCATCAGAAGATTCTACGCCGGTGT
                      ____________________________________________________________
consensus                 GCACTCTACGGTCTTCTTCCCGGAAAAAATTTCATCAGAAGATTCTACGCCGGTGT
 
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JMFF032B15-           TGATTGCTAACTTTATCTTCATGTTCTCTATCTTTATTCTACAGTGATGCTTCTGATAAA
rJMFF005L17-                                                                  TAAA
                      ____________________________________________________________
consensus             TGATTGCTAACTTTATCTTCATGTTCTCTATCTTTATTCTACAGTGATGCTTCTGATAAA
 
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JMFF032B15-           TCTAAAGCCAAGCGGAATAAACTGAAGAGTGCTGGTGAAAAAATTGAATATAAGTGCCTT
JMFF005L17+           TCTAAAGCCAAGCATAATAAACTGAAGAGTGCTGGTGAAAAAATTGAATATAAGTGCCTT
rJMFF005L17-          TCTAAAGCCAAGCATAATAAACTGAAGAGTGCTGGTGAAAAAATTGAATATAAGTGCCTT
                      ____________________________________________________________
consensus             TCTAAAGCCAAGCATAATAAACTGAAGAGTGCTGGTGAAAAAATTGAATATAAGTGCCTT
 
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JMFF032B15-           ATTCGAGCAACTGATGGGAAAAAGAACATTTCTACAATGGTGGGGCCGAAAGATCACCAG
JMFF005L17+           ATTCGAGCAACTGATGGGAAAAAGAACATTTCTACAATGGTGGGGCCGAAAGATCACCGG
rJMFF005L17-          ATTCGAGCAACTGATGGGAAAAAGAACATTTCTACAATGGTGGGGCCGAAAGATCACCGG
                      ____________________________________________________________
consensus             ATTCGAGCAACTGATGGGAAAAAGAACATTTCTACAATGGTGGGGCCGAAAGATCACCGG
 
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JMFF032B15-           CGTTTTCAAGCTTCTTACGCAATTTTGTTGAAGGCTC                       
JMFF005L17+           CGTTTTCAAGCTTCATACGCAATTTTGTGGAAGGCTCTGATCGGTTGTTTAGTTTGATAA
JMFF028C19+                                                       TTGTTTAGTTTGATAA
rJMFF005L17-          CGTTTTCAAGCTTCATACGCAATTTTGTGGAAGGCTCTGATCGGTTGTTTAGTTTGATAA
                      ____________________________________________________________
consensus             CGTTTTCAAGCTTCATACGCAATTTTGTGGAAGGCTCTGATCGGTTGTTTAGTTTGATAA
 
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JMFF005L17+           GAAATAGGGCTCAATTTCAGAAAATCCTTCCAATTAGAGGCAAAGTGCACATCGGATCTC
JMFF028C19+           GAAATAGGGCTCAATTTCAGAAAATCCTTCCAATTAGAGGCAAAGTGCACATCGGATCTC
rJMFF005L17-          GAAATAGGGCTCAATTTCAGAAAATCCTTCCAATTAGAGGCAAAGTGCACATCGGATCTC
                      ____________________________________________________________
consensus             GAAATAGGGCTCAATTTCAGAAAATCCTTCCAATTAGAGGCAAAGTGCACATCGGATCTC
 
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JMFF005L17+           TTGATTCGAGAACAGTAAAACAATGCCTCACCTTCGTTACTACCAAACCCCACGCCGTCA
JMFF028C19+           TTGATTCGAGAACAGTAAAACAATGCCTCACCTTCGTTACTACCAAACCCCACGCCGTCA
rJMFF005L17-          TTGATTCGAGAACAGTAAAACAATGCCTCACCTTCGTTACTACCAAACCCCACGCCGTCA
                      ____________________________________________________________
consensus             TTGATTCGAGAACAGTAAAACAATGCCTCACCTTCGTTACTACCAAACCCCACGCCGTCA
 
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JMFF005L17+           GAGGAACACCACGCCGGAACTGCCGCCATTTCTGCCACTTCTCCGAAGTGGAGCGTCGCT
JMFF028C19+           GAGGAACACCACGCCGGAACTGCCGCCATTTCTGCCACTTCTCCGAAGTGGAGCGTCGCT
rJMFF005L17-          GAGGAACACCACGCCGGAACTGCCGCCATTTCTGCCACTTCTCCGAAGTGGAGCGTCGCT
                      ____________________________________________________________
consensus             GAGGAACACCACGCCGGAACTGCCGCCATTTCTGCCACTTCTCCGAAGTGGAGCGTCGCT
 
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JMFF005L17+           GCTGTTGGGTGTTGCCGTCATCGCCTGCTGCAGGTCGTCAAACTAAAGAAGCCGAGGACG
JMFF028C19+           GCTGTTGGGTGTTGCCGTCATCGCCTGCTGCAGGTCGTCAAACTAAAGAAGCCGAGGACG
rJMFF005L17-          GCTGTTGGGTGTTGCCGTCATCGCCTGCTGCAGGTCGTCAAACTAAAGAAGCCGAGGACG
                      ____________________________________________________________
consensus             GCTGTTGGGTGTTGCCGTCATCGCCTGCTGCAGGTCGTCAAACTAAAGAAGCCGAGGACG
 
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JMFF005L17+           AGAAGGTGATGGCGGAGGTCCCTGAAGCTGCTACGCCACTGGTTCATTGCTGGGTGGTCG
JMFF028C19+           AGAAGGTGATGGCGGAGGTCCCTGAAGCTGCTACGCCACTGGTTCATTGCTGGGTGGTCG
rJMFF005L17-          AGAAGGTGATGGCGGAGGTCCCTGAAGCTGCTACGCCACTGGTTCATTGCTGGGTGGTCG
                      ____________________________________________________________
consensus             AGAAGGTGATGGCGGAGGTCCCTGAAGCTGCTACGCCACTGGTTCATTGCTGGGTGGTCG
 
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JMFF005L17+           AGAGAGAGAAGGGATGAAGATAGT                                    
JMFF028C19+           AGAGAGAGAAGGGATGAAGATAGT                                    
rJMFF005L17-          AGAGAGAGAAGGGATGAAGATAGTGGCTGCAGGAAAACTCCTTGAGGGAGAGAGAGAAAG
                      ____________________________________________________________
consensus             AGAGAGAGAAGGGATGAAGATAGTGGCTGCAGGAAAACTCCTTGAGGGAGAGAGAGAAAG