Contig 013611:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004N23Sequence604013611 (3)ref|XP_006467327.1|35.4PREDICTED: uncharacterized protein LOC102625297 [Citrus sinensis]
JMFF017F23Sequence559013611 (3)ref|XP_006467327.1|32.7PREDICTED: uncharacterized protein LOC102625297 [Citrus sinensis]603013611 (3)ref|XP_006467327.1|35.4PREDICTED: uncharacterized protein LOC102625297 [Citrus sinensis]

Alignment

This contig is upended


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JMFF017F23-                                                                   AGTC
rJMFF017F23+                                                                  AGTC
rJMFF004N23+                                                                  AGTC
                      ____________________________________________________________
consensus                                                                     AGTC
 
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JMFF017F23-           TCCGGGTCTGTACGCTTAGGGTTAAAACAACAAAAGTCTAGGGAAGGAGTCGGCATTGCA
rJMFF017F23+          TCCGGGTCTGTACGCTTAGGGTTAAAACAACAAAAGTCTAGGGAAGGAGTCGGCATTGCA
rJMFF004N23+          TCCGGGTCTGTACGCTTAGGGTTAAAACAACAAAAGTCTAGGGAAGGAGTCGGCATTGCA
                      ____________________________________________________________
consensus             TCCGGGTCTGTACGCTTAGGGTTAAAACAACAAAAGTCTAGGGAAGGAGTCGGCATTGCA
 
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JMFF017F23-           CAATCACTAGAGGGGAAAACGAAAGCACAAACGGCAACTAGGTGAAGAGGTGGGGGCGAC
rJMFF017F23+          CAATCACTAGAGGGGAAAACGAAAGCACAAACGGCAACTAGGTGAAGAGGTGGGGGCGAC
rJMFF004N23+          CAATCACTAGAGGGGAAAACGAAAGCACAAACGGCAACTAGGTGAAGAGGTGGGGGCGAC
                      ____________________________________________________________
consensus             CAATCACTAGAGGGGAAAACGAAAGCACAAACGGCAACTAGGTGAAGAGGTGGGGGCGAC
 
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JMFF017F23-           TACACAACCGGGAGCTATGGCGGACGGAACACCAAGAAGAGGTCAACGGCGTCCATCTAT
rJMFF017F23+          TACACAACCGGGAGCTATGGCGGACGGAACACCAAGAAGAGGTCAACGGCGTCCATCTAT
rJMFF004N23+          TACACAACCGGGAGCTATGGCGGACGGAACACCAAGAAGAGGTCAACGGCGTCCATCTAT
                      ____________________________________________________________
consensus             TACACAACCGGGAGCTATGGCGGACGGAACACCAAGAAGAGGTCAACGGCGTCCATCTAT
 
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JMFF017F23-           TGAGGCAACGAGTAGACTCCGTGTGGGAAGCTAGAAATGACAAAGTGTGGAATCACATTG
rJMFF017F23+          TGAGGCAACGAGTAGACTCCGTGTGGGAAGCTAGAAATGACAAAGTGTGGAATCACATTG
rJMFF004N23+          TGAGGCAACGAGTAGACTCCGTGTGGGAAGCTAGAAATGACAAAGTGTGGAATCACATTG
                      ____________________________________________________________
consensus             TGAGGCAACGAGTAGACTCCGTGTGGGAAGCTAGAAATGACAAAGTGTGGAATCACATTG
 
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JMFF017F23-           TTATTCCTGATTATGTAGTATTGGGAAGAGCTCATACATTTCTTCATGAATGGCAATTTG
rJMFF017F23+          TTATTCCTGATTATGTAGTATTGGGAAGAGCTCATACATTTCTTCATGAATGGCAATTTG
rJMFF004N23+          TTATTCCTGATTATGTAGTATTGGGAAGAGCTCATACATTTCTTCATGAATGGCAATTTG
                      ____________________________________________________________
consensus             TTATTCCTGATTATGTAGTATTGGGAAGAGCTCATACATTTCTTCATGAATGGCAATTTG
 
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JMFF017F23-           TCAACTCTGAAGGGAGGCATCAAGTTAATGAGGCTCTACACAATCAGAGATGGATGGCAC
rJMFF017F23+          TCAACTCTGAAGGGAGGCATCAAGTTAATGAGGCTCTACACAATCAGAGATGGATGGCAC
rJMFF004N23+          TCAACTCTGAAGGGAGGCATCAAGTTAATGAGGCTCTACACAATCAGAGATGGATGGCAC
                      ____________________________________________________________
consensus             TCAACTCTGAAGGGAGGCATCAAGTTAATGAGGCTCTACACAATCAGAGATGGATGGCAC
 
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JMFF017F23-           CCCCGTTAGGGCTGGAAAATAATTAATGTGGATGTTACTCTGGACTTTGCAAATAAAAGG
rJMFF017F23+          CCCCGTTAGGGCTGGAAAATAATTAATGTGGATGTTACTCTGGACTTTGCAAATAAAAGG
rJMFF004N23+          CCCCGTTAGGGCTGGAAAATAATTAATGTGGATGTTACTCTGGACTTTGCAAATAAAAGG
                      ____________________________________________________________
consensus             CCCCGTTAGGGCTGGAAAATAATTAATGTGGATGTTACTCTGGACTTTGCAAATAAAAGG
 
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JMFF017F23-           ATGGGGTTTGGCCTTGTGTTGAGAGAATCAAATGCTAACTTTCGTGCTGCAGAGGCGAGT
rJMFF017F23+          ATGGGGTTTGGCCTTGTGTTGAGAGAATCAAATGCTAACTTTCGTGCTGCAGAGGCGAGT
rJMFF004N23+          ATGGGGTTTGGCCTTGTGTTGAGAGAATCAAATGCTAACTTTCGTGCTGCAGAGGCGAGT
                      ____________________________________________________________
consensus             ATGGGGTTTGGCCTTGTGTTGAGAGAATCAAATGCTAACTTTCGTGCTGCAGAGGCGAGT
 
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JMFF017F23-           GATTTCTTGGTAAGGGTTTTATAAATCAAATGAAGCAGAGGCAATGGGAGTTAGAGAAAC
rJMFF017F23+          GATTTCTTGGTAAGGGTTTTATAAATCAAATGAAGCAGAGGCAATGGGAGTTAGAGAAAC
rJMFF004N23+          GATTTCTTGGTAAGGGTTTTATAAATCAAATGAAGCAGAGGCAATGGGAGTTAGAGAAAC
                      ____________________________________________________________
consensus             GATTTCTTGGTAAGGGTTTTATAAATCAAATGAAGCAGAGGCAATGGGAGTTAGAGAAAC
 
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JMFF017F23-           TTTGAAATGGATGAA                                             
rJMFF017F23+          TTTGAAATGGATGAAGGAATGCAGTGAATATTTTATACATGTGGGGACAAACTCTTTGA 
rJMFF004N23+          TTTGAAATGGATGAAGGAATGCAGTGAATATTTTATACATGTGGGGACAAACTCTTTGAA
                      ____________________________________________________________
consensus             TTTGAAATGGATGAAGGAATGCAGTGAATATTTTATACATGTGGGGACAAACTCTTTGAA