| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004L09 | Sequence | 470 | 003065 (3) | ref|XP_006360179.1| | 3e-38 | PREDICTED: secologanin synthase-like [Solanum tuberosum] | 757 | 013608 (3) | ref|XP_006348902.1| | 2e-107 | PREDICTED: 11-oxo-beta-amyrin 30-oxidase-like isoform X2 [Solanum tuberosum] |
| JMSF027D14 | Sequence | 644 | 003065 (3) | ref|XP_006348303.1| | 6e-72 | PREDICTED: secologanin synthase-like [Solanum tuberosum] | 814 | 013608 (3) | ref|XP_006348902.1| | 3e-114 | PREDICTED: 11-oxo-beta-amyrin 30-oxidase-like isoform X2 [Solanum tuberosum] |
| JMSF048H09 | Sequence | 680 | 003065 (3) | ref|XP_006360179.1| | 1e-71 | PREDICTED: secologanin synthase-like [Solanum tuberosum] | 744 | 013608 (3) | ref|XP_006348902.1| | 9e-109 | PREDICTED: 11-oxo-beta-amyrin 30-oxidase-like isoform X2 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF027D14+ AAACATGATTTTTTAGGCATAT
____________________________________________________________
consensus AAACATGATTTTTTAGGCATAT
. : . : . : . : . : . :
rJMSF027D14+ TACTCGAATCCAACCTGCCAGAAATGAGACATCAGGGGAACAAGGACTGTGGAATGAGCA
rJMSF048H09+ CAGGGGAACAAGGACTGTGGAATGAGCA
rJMFF004L09+ TGGAATGAGCA
____________________________________________________________
consensus TACTCGAATCCAACCTGCCAGAAATGAGACATCAGGGGAACAAGGACTGTGGAATGAGCA
. : . : . : . : . : . :
rJMSF027D14+ TCGAACAGATTATCGACGAGTGCATGCTGTTCTATTTCGCGGGGCAGGAGACTACTTCCG
rJMSF048H09+ TCGAACAGATTATCGACGAGTGCATGCTGTTCTATTTCGCGGGGCAGGAGACTACTTCCG
rJMFF004L09+ TCGAACAGATTATCGACGAGTGCATGCTGTTCTATTTCGCGGGGCAGGAGACTACTTCCG
____________________________________________________________
consensus TCGAACAGATTATCGACGAGTGCATGCTGTTCTATTTCGCGGGGCAGGAGACTACTTCCG
. : . : . : . : . : . :
rJMSF027D14+ CGATGCTGGTGTGGACTATGATTCTACTCAGCAGATCTCGGGATTGGCAAGCTCGAGCTA
rJMSF048H09+ CGATGCTGGTGTGGACTATGATTCTACTCAGCAGATTTCGGGATTGGCAAGCTCGAGCTA
rJMFF004L09+ CGATGCTGGTGTGGACTATGATTCTACTCAGCAGATTTCGGGATTGGCAAGCTCGAGCTA
____________________________________________________________
consensus CGATGCTGGTGTGGACTATGATTCTACTCAGCAGATTTCGGGATTGGCAAGCTCGAGCTA
. : . : . : . : . : . :
rJMSF027D14+ GGAAAGAGGTGTTGCAGGTTTTCGGGGATAAGGAGCCAGACTTTGAAGGCTTGAATAGCC
rJMSF048H09+ GGAAAGAGGTGTTGCAGGTTTTCGGGGATAAGGAGCCAGACTTTGAAGGCTTGAATAGCC
rJMFF004L09+ GGAAAGAGGTGTTGCAGGTTTTCGGGGATAAGGAGCCAGACTTTGAAGGCTTGAATAGCC
____________________________________________________________
consensus GGAAAGAGGTGTTGCAGGTTTTCGGGGATAAGGAGCCAGACTTTGAAGGCTTGAATAGCC
. : . : . : . : . : . :
rJMSF027D14+ TTAAAGTTGTGACAATGATTTTGTACGAGTCTTTAAGGCTATACCCGCCAGTATCTAGAC
rJMSF048H09+ TTAAAGTTGTGACAATGATTTTGTACGAGTCTTTAAGGCTATACCCGCCAGTATCTAGAC
rJMFF004L09+ TTAAAGTTGTGACAATGATTTTGTACGAGTCTTTAAGGCTATACCCGCCAGTATCTAGAC
____________________________________________________________
consensus TTAAAGTTGTGACAATGATTTTGTACGAGTCTTTAAGGCTATACCCGCCAGTATCTAGAC
. : . : . : . : . : . :
rJMSF027D14+ TAGTTAGGAGGACCATAGAGGAAACGAAGCTAGGAGAAATGGTTCTGCCATCGGGAGTAG
rJMSF048H09+ TAGTTAGGAGGACCATAGAGGAAACGAAGCTAGGAGAAATGGTTCTGCCATCGGGAGTAG
rJMFF004L09+ TAGTTAGGAGGACCATAGAGGAAACGAAGCTAGGAGAAATGGTTCTGCCATCGGGAGTAG
____________________________________________________________
consensus TAGTTAGGAGGACCATAGAGGAAACGAAGCTAGGAGAAATGGTTCTGCCATCGGGAGTAG
. : . : . : . : . : . :
rJMSF027D14+ TGCTGACATTACCAATAGTCTTGATGCATCTCGACACCGAAATATGGGGCGAAGATGCTA
rJMSF048H09+ TGCTGACATTACCAATAGTCTTGATGCATCTCGACACCGAAATATGGGGCGAAGATGCTA
rJMFF004L09+ TGCTGACATTACCAATAGTCTTGATGCATCTCGACACCGAAATATGGGGCGAAGATGCTA
____________________________________________________________
consensus TGCTGACATTACCAATAGTCTTGATGCATCTCGACACCGAAATATGGGGCGAAGATGCTA
. : . : . : . : . : . :
rJMSF027D14+ AAGAGTTCAACCCCGAGAGGTTCAGCGAAGGGATAATGAAGGCAACGACAAATGGGAAAC
rJMSF048H09+ AAGAGTTCAACCCCGAGAGGTTCAGCGAAGGGATAATGAAGGCAACGACAAATGGGAAAC
rJMFF004L09+ AAGAGTTCAACCCCGAGAGGTTCAGCGAAGGGATAATGAAGGCAACGACAAATGGGAAAC
____________________________________________________________
consensus AAGAGTTCAACCCCGAGAGGTTCAGCGAAGGGATAATGAAGGCAACGACAAATGGGAAAC
. : . : . : . : . : . :
rJMSF027D14+ AAGCATTCTTCCCGTTTGGCTGGGGACCTCGAATATGCGTTGGTCAAAACTTTGCTTTGG
rJMSF048H09+ AAGCATTCTTCCCGTTTGGCTGGGGACCTCGAATATGCGTTGGTCAAAACTTTGCTTTGG
rJMFF004L09+ AAGCATTCTTCCCGTTTGGCTGGGGACCTCGAATATGCGTTGGTCAAAACTTTGCTTTGG
____________________________________________________________
consensus AAGCATTCTTCCCGTTTGGCTGGGGACCTCGAATATGCGTTGGTCAAAACTTTGCTTTGG
. : . : . : . : . : . :
rJMSF027D14+ TAGAAGCTAAAATGGCAATGGCTATGATTCTGCAACGCTTCTCGTTTGAGCTTTCTCCTT
rJMSF048H09+ TAGAAGCTAAAATGGCAATGGCTATGATTCTGCAACGCTTCTCGTTTGAGCTTTCTCCTT
rJMFF004L09+ TAGAAGCTAAAATGGCAATGGCTATGATTCTGCAACGCTTCTCGTTTGAGCTTTCTCCTT
____________________________________________________________
consensus TAGAAGCTAAAATGGCAATGGCTATGATTCTGCAACGCTTCTCGTTTGAGCTTTCTCCTT
. : . : . : . : . : . :
rJMSF027D14+ CGTATGCACATGCTCCATATCCAAGGGTGACCACTCAACCTCAGTTTGGTGTTCCTCTAA
rJMSF048H09+ CGTATGCACATGCTCCATATCCAAGGGTGACCACTCAACCTCAGTTTGGTGCTCCTCTAA
rJMFF004L09+ CGTATGCACATGCTCCATATCCAAGGGTGACCACTCAACCTCAGTTTGGTGCTCCTCTAA
____________________________________________________________
consensus CGTATGCACATGCTCCATATCCAAGGGTGACCACTCAACCTCAGTTTGGTGCTCCTCTAA
. : . : . : . : . : . :
rJMSF027D14+ TTATGCACAAGCTTTAAT
rJMSF048H09+ TTATGCACAAGCTTTAATATATATGCTTCTTCCCAGTTCTTAGAAATCCACCAATATGTA
rJMFF004L09+ TTATGCACAAGCTTTAATATATATGCTTCTTCNCAGTTCTTAGAAATCCACCAATATGTA
____________________________________________________________
consensus TTATGCACAAGCTTTAATATATATGCTTCTTCCCAGTTCTTAGAAATCCACCAATATGTA
. : . : . : . : . : . :
rJMSF048H09+ GGCTTGAACCAAATTTCTATATGTTTTGTACTATGG
rJMFF004L09+ GGCTTGAACCAAATTTCTATATGTTTTGTACTATGGGAAGTTTACTGCAGACTGAAAGAC
____________________________________________________________
consensus GGCTTGAACCAAATTTCTATATGTTTTGTACTATGGGAAGTTTACTGCAGACTGAAAGAC