Contig 013607:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004J08Sequence508007287 (2)ref|XP_009798541.1|1e-83PREDICTED: signal recognition particle receptor subunit alpha [Nicotiana sylves716013607 (2)ref|XP_009790358.1|2e-125PREDICTED: signal recognition particle receptor subunit alpha homolog [Nicotian
JMFS155A11Sequence589013607 (2)ref|XP_009790358.1|3e-119PREDICTED: signal recognition particle receptor subunit alpha homolog [Nicotian

Alignment

This contig is upended


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rJMFF004J08-              CCTTCACATTCAAGTCCTGAGATGACATAACAAAGACAAGGCATTGTGTAACAACA
                      ____________________________________________________________
consensus                 CCTTCACATTCAAGTCCTGAGATGACATAACAAAGACAAGGCATTGTGTAACAACA
 
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JMFS155A11+                                                   ACTGCAGCAAAGATTTGATC
rJMFF004J08-          TTCAAAGTCTTAATATCACATAACAGACACAACAAACTGAACTGCAGCAAAGATTTGATC
                      ____________________________________________________________
consensus             TTCAAAGTCTTAATATCACATAACAGACACAACAAACTGAACTGCAGCAAAGATTTGATC
 
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JMFS155A11+           GTTAAAGTNTGCGCAATAGAAAGCAAGACACAACGACACAAGGTCACGACTACTTGAGCA
rJMFF004J08-          GTTAAAGTTTGCGCAATAGAAAGCAAGACACAACGACACAAGGTCACGACTACTTGAGCA
                      ____________________________________________________________
consensus             GTTAAAGTTTGCGCAATAGAAAGCAAGACACAACGACACAAGGTCACGACTACTTGAGCA
 
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JMFS155A11+           GGGTCTTGACAATGGACTTGACATTGAGCTTCTTCAAGTCTGTATACGACTGCCCACATC
rJMFF004J08-          GGGTCTTGACAATGGACTTGACATTGAGCTTCTTCAAGTCTGTATACGACTGCCCACATC
                      ____________________________________________________________
consensus             GGGTCTTGACAATGGACTTGACATTGAGCTTCTTCAAGTCTGTATACGACTGCCCACATC
 
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JMFS155A11+           CCACAAACATGACTGGTGCTCCAGATATGTAAACCATGGATAATGCCGCTCCCACCTTGT
rJMFF004J08-          CCACAAACATGACTGGTGCTCCAGATATGTAAACCATGGATAATGCCGCTCCCACCTTGT
                      ____________________________________________________________
consensus             CCACAAACATGACTGGTGCTCCAGATATGTAAACCATGGATAATGCCGCTCCCACCTTGT
 
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JMFS155A11+           CATCAATGGTGTCAAACTTTGTAAGGAGAATTCCATCGATTAATCTTGGATTTGGTGAGG
rJMFF004J08-          CATCAATGGTGTCAAACTTTGTAAGGAGAATTCCATCGATTAATCTTGGATTTGGTGAGG
                      ____________________________________________________________
consensus             CATCAATGGTGTCAAACTTTGTAAGGAGAATTCCATCGATTAATCTTGGATTTGGTGAGG
 
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JMFS155A11+           GTGATAAATCGCCCAATTTCTGATTGAATTTTGATAATTGGTCAACAGCATCATTGCCCA
rJMFF004J08-          GTGATAAGTCGCCCAATTTCTGATTGAATTTTGATAATTGGTCAACAGCATCATTGCCCA
                      ____________________________________________________________
consensus             GTGATAAGTCGCCCAATTTCTGATTGAATTTTGATAATTGGTCAACAGCATCATTGCCCA
 
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JMFS155A11+           CAAGTGCCTCACCAACAAACAGGACTAAATCTGGACTGTTAACATAAATAAGCTTTGATA
rJMFF004J08-          CAAGTGCCTCACCAACAAACAGGACTAAATCTGGACTGTTAACATAAATAAGCTTTGATA
                      ____________________________________________________________
consensus             CAAGTGCCTCACCAACAAACAGGACTAAATCTGGACTGTTAACATAAATAAGCTTTGATA
 
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JMFS155A11+           GTGCTCTCATCAATGGTTCGTTATCCTGCATTCGACCAGCTGTATCAACAAGGACAACAT
rJMFF004J08-          GTGCTCTCATCAATGGTTCGTTATCCTGCATTCGACCAGCTGTATCAACAAGGACAACAT
                      ____________________________________________________________
consensus             GTGCTCTCATCAATGGTTCGTTATCCTGCATTCGACCAGCTGTATCAACAAGGACAACAT
 
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JMFS155A11+           CAGAGCCATTGCGAGATGCCTCTTGGATTGCTTCCTTTGCAACAATTGCAGGGTCTTTCT
rJMFF004J08-          CAGAGCCATTGCGAGATGCCTCTTGGATTGCTTCCTTTGCAACAATTGCAGGGTCTTTCT
                      ____________________________________________________________
consensus             CAGAGCCATTGCGAGATGCCTCTTGGATTGCTTCCTTTGCAACAATTGCAGGGTCTTTCT
 
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JMFS155A11+           CATAGCCCTTCTCAAATATTGGGATCTGAAGCCTACGGGCATGAGTTCGTAGTTGCTCCA
rJMFF004J08-          CATAGCCCTTCTCAAATATTGGGATCTGAAGCCTACGGGCATGAGTTCGTAGTTGCTCCA
                      ____________________________________________________________
consensus             CATAGCCCTTCTCAAATATTGGGATCTGAAGCCTACGGGCATGAGTTCGTAGTTGCTCCA
 
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JMFS155A11+           CAGCTCCTGATCGGAACGTGTCACAAGCA                               
rJMFF004J08-          CAGCTCCTGATCGGAACGTGTCACAAGCAGCCATCATTACATTGATCTTATGCTGTANAA
                      ____________________________________________________________
consensus             CAGCTCCTGATCGGAACGTGTCACAAGCAGCCATCATTACATTGATCTTATGCTGTANAA