Contig 013606:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004G02Sequence575003468 (3)ref|XP_004253096.1|4e-46PREDICTED: far upstream element-binding protein 2 [Solanum lycopersicum]693013606 (3)ref|XP_010097084.1|7e-08Far upstream element-binding protein 2 [Morus notabilis] gb|EXB66885.1| Far upst
JMFN018K06Sequence479013606 (3)ref|XP_009589045.1|5e-05PREDICTED: far upstream element-binding protein 1-like [Nicotiana tomentosiform
JMSF039J01Sequence606003813 (6)ref|XP_004253096.1|1e-41PREDICTED: far upstream element-binding protein 2 [Solanum lycopersicum]871013606 (3)emb|CDP08239.1|7e-14unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF039J01+                CAGGTCAGCCAAATCCTGTTTCCTGGATATGATCAGCAACAGGGTTATAATTCA
                      ____________________________________________________________
consensus                   CAGGTCAGCCAAATCCTGTTTCCTGGATATGATCAGCAACAGGGTTATAATTCA
 
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rJMSF039J01+          ACAACTGGGTATAGTAATACTTCCAACACAGCAGCAGCAGATGGCCACACGCCTTCATTC
                      ____________________________________________________________
consensus             ACAACTGGGTATAGTAATACTTCCAACACAGCAGCAGCAGATGGCCACACGCCTTCATTC
 
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rJMSF039J01+          GGGACCCAGAGTGATACAAGTCAAGCACCTCCAAATCAGTCAGCAGCCAGCCAACCTGGG
                      ____________________________________________________________
consensus             GGGACCCAGAGTGATACAAGTCAAGCACCTCCAAATCAGTCAGCAGCCAGCCAACCTGGG
 
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rJMSF039J01+          TACCATACTTCCCAGCATCCTAGCCCTAATGCCAATTACCAGCATCAAGGAACAACTCAG
                      ____________________________________________________________
consensus             TACCATACTTCCCAGCATCCTAGCCCTAATGCCAATTACCAGCATCAAGGAACAACTCAG
 
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rJMSF039J01+          CCAGGGTATGGCATACCAACTTCACAAGGTGGATATGGGACTCAGCCACCTGCATATGGC
rJMFF004G02+                                  CAAGGTGGATATGGGACACAGCCACCTGCCTATGGC
                      ____________________________________________________________
consensus             CCAGGGTATGGCATACCAACTTCACAAGGTGGATATGGGACTCAGCCACCTGCCTATGGC
 
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rJMSF039J01+          ACCAATTATGGGCAGCCCCCGTCTCAAAAGCCCCCGACTAGTCAACCAGCTTACGGGCAG
rJMFF004G02+          AACAACTATGGACAACCCCCATCTCAAAAGCCTCCAACTAGTCAACCAGCTTACGG---T
                      ____________________________________________________________
consensus             ACCAATTATGGGCAGCCCCCGTCTCAAAAGCCTCCGACTAGTCAACCAGCTTACGGGCAT
 
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rJMSF039J01+          CAGCCGCAACAGTCACCTAGTGCCCAGGGAGGTTATGCACAGCCCCCTCAGGTATATCCT
rJMFF004G02+          CAGCCCCAACAGTCACCTAGTGCCCAGGGAGGTTATGCACAGCCCCCTCAGGTATATCCA
                      ____________________________________________________________
consensus             CAGCCGCAACAGTCACCTAGTGCCCAGGGAGGTTATGCACAGCCCCCTCAGGTATATCCT
 
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rJMSF039J01+          CACTCTCAGCCTTTACCTGCTGTAACTGGTTATTCTCAGCCTGATTCTGGTTCCCAGCGT
rJMFF004G02+          CACTCTCAGCCTTCACCTACTCTATCTGGTTATTCTCAGCCTGATTCTGGTTCTCAGCGT
                      ____________________________________________________________
consensus             CACTCTCAGCCTTTACCTGCTGTATCTGGTTATTCTCAGCCTGATTCTGGTTCTCAGCGT
 
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rJMSF039J01+          CCTACCTCTACTGGATATGGT------GCAACCCAACCGGGTTATGGCCCCCCAGCCTAT
JMFN018K06-                                            CAACCGGGTTATGGCCCCCCACCCTAT
rJMFF004G02+          GCTCCCTCTACTGGATATGGTGCCCCGGCAAGTCAACCGGGTTATGGCCCTCCATCGTAT
                      ____________________________________________________________
consensus             GCTCCCTCTACTGGATATGGTGCCCCGGCAAGTCAACCGGGTTATGGCCCCCCATCCTAT
 
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rJMSF039J01+          GGAGCTCCACCAATGACTCAATCGGGAGTGTCATACAATAGTGGGTATGGTGGTAATAGT
JMFN018K06-           GGGGCGCCACAGATGACTCAATCAGGAGTGCCATACAATAGTGGTTATGGTGGTAGTGGT
rJMFF004G02+          GGGGCACCACAGATGACTCAATCAGGAGTGCCATACAATAGTGGATATGGTGGTAGTGGT
                      ____________________________________________________________
consensus             GGGGCTCCACAGATGACTCAATCAGGAGTGCCATACAATAGTGGTTATGGTGGTAGTGGT
 
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rJMSF039J01+          TATTCTCAGCCTTCAGCATACTCCACCGATGGAAG---TGGTGGTGGTGCACGAGCAACA
JMFN018K06-           TATTCCCAGGCTTCAGCATACTCCACTGATGGAAGTGCTGGTGGTGGTGCACGGGCGAGC
rJMFF004G02+          TATTCCCAGGCTTCAGCATACTCCACTGATGGAAGTGGTGGTGGTGGTGCACCTGCGAGC
                      ____________________________________________________________
consensus             TATTCCCAGGCTTCAGCATACTCCACTGATGGAAGTGGTGGTGGTGGTGCACGTGCGAGC
 
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rJMSF039J01+          TATGATACAGCACCAACTTCTCAGTCTTCCCAGCCCACAGGGTCGGCTAAAACCTCTCCA
JMFN018K06-           TATGATACAGCACCAACTTCTCAGTCTTCCCAGCCCACTGGGTCAGCTAAAACCTCTCCA
rJMFF004G02+          TATGATACAGCACCAACTTCTCAGTCCTCCCAGCCCACTGGGTCGGCAAAAACCTCTCCA
                      ____________________________________________________________
consensus             TATGATACAGCACCAACTTCTCAGTCTTCCCAGCCCACTGGGTCGGCTAAAACCTCTCCA
 
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rJMSF039J01+          GAGAGTTGAT                                                  
JMFN018K06-           CAGAGTTGATTT                                                
rJMFF004G02+          CAGAGTTGATATCTTTGACTTAAATGGTGGTTATGAATTTTGCATGTACTTTGGTTATGT
                      ____________________________________________________________
consensus             CAGAGTTGATTTCTTTGACTTAAATGGTGGTTATGAATTTTGCATGTACTTTGGTTATGT
 
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rJMFF004G02+          TCTGCATTTTAGTTTCTTGATCCTTTGAATGTAGAATTAATTTGTTGTGATATCTGTTTT
                      ____________________________________________________________
consensus             TCTGCATTTTAGTTTCTTGATCCTTTGAATGTAGAATTAATTTGTTGTGATATCTGTTTT
 
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rJMFF004G02+          CTTATCTTAACTCTAATTGCAGTATGACTCTATGTTTCATAATTTGTGGTTCTCAATCTA
                      ____________________________________________________________
consensus             CTTATCTTAACTCTAATTGCAGTATGACTCTATGTTTCATAATTTGTGGTTCTCAATCTA
 
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rJMFF004G02+          TGTTTATTCTTGTAAGGGAAAAAGGGTCAAATAGATCCAAAAACATTATAGAAAGAGCAA
                      ____________________________________________________________
consensus             TGTTTATTCTTGTAAGGGAAAAAGGGTCAAATAGATCCAAAAACATTATAGAAAGAGCAA