Contig 013603:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF031I13-                                                 GAGTGTGTAATTCATCAGAGTC
                      ____________________________________________________________
consensus                                                   GAGTGTGTAATTCATCAGAGTC
 
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JMSF031I13-           TGAGACGGTAAAAGCCTACGAGTCCAGTGAAGAGAGTTGGAATCACGCTAATTGAAGGCA
JMFF003O05-                                                              TTGAAGGCA
                      ____________________________________________________________
consensus             TGAGACGGTAAAAGCCTACGAGTCCAGTGAAGAGAGTTGGAATCACGCTAATTGAAGGCA
 
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JMSF031I13-           AACGATGTCCGCTCCCGACCAAGCCGCGGCGGCGGTGCTTTCTCAGGTAGCACTGGCGGC
JMFF003O05-           AACGATGTCCGCTCCCGACCAAGCCGCGGCGGCGGTGCTTTCTCAGGTAGCACTGGCGGC
                      ____________________________________________________________
consensus             AACGATGTCCGCTCCCGACCAAGCCGCGGCGGCGGTGCTTTCTCAGGTAGCACTGGCGGC
 
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JMSF031I13-           GGACGGCACCGTTCTCGGCCTAGCCCTAGCCTTCATTGCCGTGCGGAGCGTACTCAAGTT
JMFF003O05-           GGACGGCACCGTTCTCGGCCTAGCCCTAGCCTTCATTGCCGTGCGGAGCGTACTCAAGTT
                      ____________________________________________________________
consensus             GGACGGCACCGTTCTCGGCCTAGCCCTAGCCTTCATTGCCGTGCGGAGCGTACTCAAGTT
 
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JMSF031I13-           CAAGGCTACAAACTCCGCTCTACACAAAATCAAAGAAGCTCCTTCCGTCCGCGTTTCCGA
JMFF003O05-           CAAGGCTACAAACTCCGCTCTACACAAAATCAAAGAAGCTCCTTCCGTCCGCGTTTCCGA
                      ____________________________________________________________
consensus             CAAGGCTACAAACTCCGCTCTACACAAAATCAAAGAAGCTCCTTCCGTCCGCGTTTCCGA
 
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JMSF031I13-           TCTCCGTTCCGTCGTCTCTGAACACGGCGACTCCAACCAATCCGACGAAGGCAAGCTCGT
JMFF003O05-           TCTCCGTTCCGTCGTCTCTGAACACGGCGACTCCAACCAATCCGACGAAGGCAAGCTCGT
                      ____________________________________________________________
consensus             TCTCCGTTCCGTCGTCTCTGAACACGGCGACTCCAACCAATCCGACGAAGGCAAGCTCGT
 
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JMSF031I13-           GATCGTCCGCGGCACCGTCGAAGCGAAGTCCGCCGTAGAAGGCGATTGGAAGAGCCTACG
JMFF003O05-           GATCGTCCGCGGCACCGTCGGAGCGAAGTCCGCCGTAGAAGGCGATTGGAAGAGCCTACG
                      ____________________________________________________________
consensus             GATCGTCCGCGGCACCGTCGGAGCGAAGTCCGCCGTAGAAGGCGATTGGAAGAGCCTACG
 
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JMSF031I13-           GAATGACGTCCTCGTTGCTCACGACTCCGGCGAGAAAGCTGTCATTGTGCAGCGAACTCA
JMFF003O05-           GAATGACGTCCTCGTTGCTCACGACTCCGGCGAGAAAGCTGTCATTGTGCAGCGAACTCA
                      ____________________________________________________________
consensus             GAATGACGTCCTCGTTGCTCACGACTCCGGCGAGAAAGCTGTCATTGTGCAGCGAACTCA
 
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JMSF031I13-           AACGTGTATATATAATGAGTGGAAAGGTTTCATGGGATGGACCAGTGATCTACGTTCTCT
JMFF003O05-           AACGTGTATATATAATGAGTGGAAAGGTTTCATGGGATGGACCAGTGATCTACGTTCTCT
                      ____________________________________________________________
consensus             AACGTGTATATATAATGAGTGGAAAGGTTTCATGGGATGGACCAGTGATCTACGTTCTCT
 
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JMSF031I13-           ATTTCCAAGATCATGGAGAGAGCAAGAGTCATCCTCCAAAAGAATGGTCCCATTTGTTAT
JMFF003O05-           ATTTCCAAGATCATGGAGAGAGCAAGAGTCATCCTCCAAAAGAATGGTCCCATTTGTTAT
                      ____________________________________________________________
consensus             ATTTCCAAGATCATGGAGAGAGCAAGAGTCATCCTCCAAAAGAATGGTCCCATTTGTTAT
 
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JMSF031I13-           TGTTGAAGCTGGAAGGTGGCCACGATCTGAATATGTTAATGTGAACATGGATGGAT    
JMFF003O05-           TGTTGAAGCTGGAAGGTGGCCACGATCTGAATATGTTAATGTGAACATGGATGGATCAAG
                      ____________________________________________________________
consensus             TGTTGAAGCTGGAAGGTGGCCACGATCTGAATATGTTAATGTGAACATGGATGGATCAAG
 
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JMFF003O05-           TCACCCCCTACCACTTGAAACAGTCTACCATCACCTGCAGCCAGTTAACGCTACTTCAAT
rJMSF031I13+                                  CTACCATCACCTGCAGCCAGTTAACGCTACTTCAAT
                      ____________________________________________________________
consensus             TCACCCCCTACCACTTGAAACAGTCTACCATCACCTGCAGCCAGTTAACGCTACTTCAAT
 
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JMFF003O05-           AACTTTCCTCCA                                                
rJMSF031I13+          AACTTTCCTCCAGGCAATTTTTGGTCATCAGTACCCTGTTGGGCTGCTACACGAAGAAAA
rJMFF003O05+               TCCTCCAGGCAATTTTTGGTCATCAGTACCCTGTTGGGCTGCTACACGAAGAAAA
                      ____________________________________________________________
consensus             AACTTTCCTCCAGGCAATTTTTGGTCATCAGTACCCTGTTGGGCTGCTACACGAAGAAAA
 
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rJMSF031I13+          AATCCTGCCACTAGGGAAGGATATCACTGCAGTTGGGATTTGCAGCTCAATTAGAGGGAC
rJMFF003O05+          AATCCTGCCACTAGGGAAGGATATCACTGCAGTTGGGATTTGCAGCTCAATTAGAGGGAC
                      ____________________________________________________________
consensus             AATCCTGCCACTAGGGAAGGATATCACTGCAGTTGGGATTTGCAGCTCAATTAGAGGGAC
 
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rJMSF031I13+          TCCAGAGATAAAGTCGTGCAATTTTCTTCCTTATTTCCTATCGGAGATGACCAAGGATCA
rJMFF003O05+          TCCAGAGATAAAGTCGTGCAATTTTCTTCCTTATTTCCTATCGGAGATGACCAAGGATCA
                      ____________________________________________________________
consensus             TCCAGAGATAAAGTCGTGCAATTTTCTTCCTTATTTCCTATCGGAGATGACCAAGGATCA
 
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rJMSF031I13+          AATGATTGTAGATCTTGCATTTAAGACAAAAGTTTTGCTATGGAGTGGGGTAGTATTTGG
rJMFF003O05+          AATGATTGTAGATCTTGCATTTAAGACAAAAGTTTTGCTATGGAGTGGGGTAGTATTTGG
                      ____________________________________________________________
consensus             AATGATTGTAGATCTTGCATTTAAGACAAAAGTTTTGCTATGGAGTGGGGTAGTATTTGG
 
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rJMSF031I13+          TTCACTTGCAGTTGGTATCCTTAGCTATGCTGCTGTAAGGAACTGGAACAGATGGAAAGA
rJMFF003O05+          TTCACTTGCAGTTGGTATCCTTAGCTATGCTGCTGTAAGGAACTGGAACAGATGGAAAGA
                      ____________________________________________________________
consensus             TTCACTTGCAGTTGGTATCCTTAGCTATGCTGCTGTAAGGAACTGGAACAGATGGAAAGA
 
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rJMSF031I13+          ATGGAGGCATCAGAGGCAGACTCAACGACAAAATGCTGCTGCTGCTAGTGATGAAGCTGC
rJMFF003O05+          ATGGAGGCATCAGAGGCAGACTCAACGACAAAATGCTGCTGCTGCTAGTGATGAAGCTGC
                      ____________________________________________________________
consensus             ATGGAGGCATCAGAGGCAGACTCAACGACAAAATGCTGCTGCTGCTAGTGATGAAGCTGC
 
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rJMSF031I13+          TGCTCAGGATGGTTCAGATGAGGACATCGCGAACATTCCTGATGGTCAGTTGTGCGTCAT
rJMFF003O05+          TGCTCAGGATGGTTCAGATGAGGACATCGCGAACATTCCTGATGGTCAGTTGTGCGTCAT
                      ____________________________________________________________
consensus             TGCTCAGGATGGTTCAGATGAGGACATCGCGAACATTCCTGATGGTCAGTTGTGCGTCAT
 
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rJMSF031I13+          TTGCCTAACAAGAAGACGGCGTTCTGCATTCGTACCATGTGGACATCTAGTGTGTTGCCC
rJMFF003O05+          TTGCCTAACAAGAAGACGGCGTTCTGCATTCGTACCATGTGGACATCTAGTGTGTTGCCC
                      ____________________________________________________________
consensus             TTGCCTAACAAGAAGACGGCGTTCTGCATTCGTACCATGTGGACATCTAGTGTGTTGCCC
 
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rJMSF031I13+          ACGCTGTGCCTTGTCAGTTGTACGCGAATTATCACCCCCGTGTCCTTTATGTAGGCAGAC
rJMFF003O05+          ACGCTGTGCCTTGTCAGTTGTACGCGAATTATCACCCCCGTGTCCTTTATGTAGGCAGAC
                      ____________________________________________________________
consensus             ACGCTGTGCCTTGTCAGTTGTACGCGAATTATCACCCCCGTGTCCTTTATGTAGGCAGAC
 
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rJMSF031I13+          CATCCATAGTGCAGTAAGGATATACGACTCTTGACTGTTATGAATGCTTTTCATAAGTAA
rJMFF003O05+          CATCCATAGTGCAGTAAGGATATACGACTCTTGACTGTTATGAATGCTTTTCATAAGTAA
                      ____________________________________________________________
consensus             CATCCATAGTGCAGTAAGGATATACGACTCTTGACTGTTATGAATGCTTTTCATAAGTAA
 
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rJMSF031I13+          AGAATTCATGATAAACTGTATAGCTGGTTTGTTGCCCAATTGGTTCTGAAAATTAGCATC
rJMFF003O05+          AGAATTCATGATAAACTGTATAGCTGGTTTGTTGCCCAATTGGTTCTGAAAATTAGCATC
                      ____________________________________________________________
consensus             AGAATTCATGATAAACTGTATAGCTGGTTTGTTGCCCAATTGGTTCTGAAAATTAGCATC
 
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rJMSF031I13+          AGGATTCAGGATAGAGGATAGATTGAGCCTCTGAGTCT                      
rJMFF003O05+          AGGATTCAGGATAGAGGATAGATTGAGCCTCTGAGTCTTGTCACCAGGGATTACTAATTG
                      ____________________________________________________________
consensus             AGGATTCAGGATAGAGGATAGATTGAGCCTCTGAGTCTTGTCACCAGGGATTACTAATTG