Contig 013595:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003A03Sequence603003493 (5)ref|XP_009609663.1|3e-37PREDICTED: RNA-dependent RNA polymerase 6, partial [Nicotiana tomentosiformis]765013595 (3)emb|CDP13507.1|1e-88unnamed protein product [Coffea canephora]
JMFN004F15Sequence602013595 (3)emb|CDP13507.1|2e-77unnamed protein product [Coffea canephora]
JMSF048M05Sequence661003493 (5)ref|XP_009609663.1|2e-46PREDICTED: RNA-dependent RNA polymerase 6, partial [Nicotiana tomentosiformis]722013595 (3)emb|CDP13507.1|3e-85unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF048M05+                                         AAGAAGAATACCAAAACGTACAAGTCCAA
rJMFF003A03+                         CCTGATTTTATGGGGAAAGAAGAATACCCAAACGTACAAGTCCAA
                      ____________________________________________________________
consensus                            CCTGATTTTATGGGGAAAGAAGAATACCCAAACGTACAAGTCCAA
 
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JMFN004F15-                                                            GAAAATGAAGG
rJMSF048M05+          G-AAATCTTGGGTAAACTGTACAGGAGAATTACAGATGCTTATGATGAAGAAAATGAAGG
rJMFF003A03+          GAAAATCTTGGGTAAACTGTACAGGAGAATTACAGATGCTTATGATGAAGAAAATGAAGG
                      ____________________________________________________________
consensus             GAAAATCTTGGGTAAACTGTACAGGAGAATTACAGATGCTTATGATGAAGAAAATGAAGG
 
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JMFN004F15-           AACATCCGGTGGGCCAATGTGCCTCCCAGAAGATGCATATGACCCCGACCTTGAGATTCC
rJMSF048M05+          AACATCCGGTGGGCCAATGTGCCTCCCAGAAGATGCATATGACCCCGACCTTGAGATTCC
rJMFF003A03+          AACATCCGGTGGGCCAATGTGCCTCCCAGAAGATGCATATGACCCCGACCTTGAGATTCC
                      ____________________________________________________________
consensus             AACATCCGGTGGGCCAATGTGCCTCCCAGAAGATGCATATGACCCCGACCTTGAGATTCC
 
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JMFN004F15-           CGGGTCAGAAACATTCTTTGAAGATGCATGGAGCTGTAAGTGTTCTTACGATGGTCAAGT
rJMSF048M05+          CGGGTCAGAAACATTCTTTGAAGATGCATGGAGCTGTAAGTGTTCTTACGATGGTCAAGT
rJMFF003A03+          CGGGTCAGAAACATTCTTTGAAGATGCATGGAGCTGTAAGTGTTCTTACGATGGTCAAGT
                      ____________________________________________________________
consensus             CGGGTCAGAAACATTCTTTGAAGATGCATGGAGCTGTAAGTGTTCTTACGATGGTCAAGT
 
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JMFN004F15-           AAACAGCCTTTTGGGGCAGTATAAGGTTAACAGAGAAGACGAAGTTGTTACTGGACATAT
rJMSF048M05+          AAACAGCCTTTTGGGGCAGTATAAGGTTAACAGAGAAGACGAAGTTGTTACTGGACATAT
rJMFF003A03+          AAACAGCCTTTTGGGGCAGTATAAGGTTAACAGAGAAGACGAAGTTGTTACTGGACATAT
                      ____________________________________________________________
consensus             AAACAGCCTTTTGGGGCAGTATAAGGTTAACAGAGAAGACGAAGTTGTTACTGGACATAT
 
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JMFN004F15-           ATGGTCCATGCCAAAGTACAGTAGCAACAAGATCGTCGATTTAAAGGAGAGACTAAAGCA
rJMSF048M05+          ATGGTCCATGCCAAAGTACAGTAGCAACAAGATCGTCGATTTAAAGGAGAGACTAAAGCA
rJMFF003A03+          ATGGTCCATGCCAAAGTACAGTAGCAACAAGATCGTCGATTTAAAGGAGAGACTAAAGCA
                      ____________________________________________________________
consensus             ATGGTCCATGCCAAAGTACAGTAGCAACAAGATCGTCGATTTAAAGGAGAGACTAAAGCA
 
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JMFN004F15-           CGCCTACAACAACCTGCGAAAGGACTTCAGGAAAGTTTTTGACCAATTCCCGCCAGATGT
rJMSF048M05+          CGCCTACAACAACCTGCGAAAGGACTTCAGGAAAGTTTTTGACCAATTCCCGCCAGATGT
rJMFF003A03+          CGCCTACAACAACCTGCGAAAGGACTTCAGGAAAGTTTTTGACCAATTCCCGCCAGATGT
                      ____________________________________________________________
consensus             CGCCTACAACAACCTGCGAAAGGACTTCAGGAAAGTTTTTGACCAATTCCCGCCAGATGT
 
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JMFN004F15-           TAACCAACTCTCAGACGACGAGAGGAATGCGTATTATGAACGAAAGGCATCAGCCTGGTA
rJMSF048M05+          TAACCAACTCTCAGACGACGAGAGGAATGCGTATTATGAACGAAAGGCATCAGCCTGGTA
rJMFF003A03+          TAACCAACTCTCAGACGACGAGAGGAATGCGTATTATGAACGAAAGGCATCAGCCTGGTA
                      ____________________________________________________________
consensus             TAACCAACTCTCAGACGACGAGAGGAATGCGTATTATGAACGAAAGGCATCAGCCTGGTA
 
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JMFN004F15-           TCAGGTGACCTACCATCGCGACTGGGTTAGTAAGTCTCTGGAGCTGCAACACCCCAATGA
rJMSF048M05+          TCAGGTGACCTACCATCGCGACTGGGTTAGTAAGTCTCTGGAGCTGCAACACCCCAATGA
rJMFF003A03+          TCAGGTGACCTACCATCGCGACTGGGTTAGTAAGTCTCTGGAGCTGCAACACCCCAATGA
                      ____________________________________________________________
consensus             TCAGGTGACCTACCATCGCGACTGGGTTAGTAAGTCTCTGGAGCTGCAACACCCCAATGA
 
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JMFN004F15-           GGCCGGGGGGTCGGTAATGTTAAGCTTCCCATGGATCGCAGCTGATTACCTTGCTATGAT
rJMSF048M05+          GGCCGGGGGGTCGGTAATGTTAAGCTTCCCATGGATCGCAGCTGATTACCTTGCTATGAT
rJMFF003A03+          GGCCGGGGGGTCGGTAATGTTAAGCTTCCCATGGATCGCAGCTGATTACCTTGCTATGAT
                      ____________________________________________________________
consensus             GGCCGGGGGGTCGGTAATGTTAAGCTTCCCATGGATCGCAGCTGATTACCTTGCTATGAT
 
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JMFN004F15-           CAAACTCCGGTGCAAGGGAATGGGAAATGCCGATTCCAGTAAGCCCATCAACGCCCTCCG
rJMSF048M05+          CAAACTCCGGTGCAAGGGAATGGGAAATGCCGATTCCAGTAAGCCCATCAACGCCCTCCG
rJMFF003A03+          CAAACTCCGGTGCAAGGGAATGGGAAATGCCGATTCCAGTAAGCCCATCAACGCCCTCCG
                      ____________________________________________________________
consensus             CAAACTCCGGTGCAAGGGAATGGGAAATGCCGATTCCAGTAAGCCCATCAACGCCCTCCG
 
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JMFN004F15-           AAAATACCTTGTCGACCGAATGTGAGTGATTCTGAGCCTTCAAACTACATT         
rJMSF048M05+          AAAATACCTTGTCGACCGAATGTGAGTGATTCTGAGCCTTCAAACTACATTAAACCTTTA
rJMFF003A03+          AAAATACCTTGTCGACCGAATGTGAGTGATTCTGAGCCTTCAAACTACATTAAACCTTTA
                      ____________________________________________________________
consensus             AAAATACCTTGTCGACCGAATGTGAGTGATTCTGAGCCTTCAAACTACATTAAACCTTTA
 
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rJMSF048M05+          TTTTTCATGTGTTTTGGCAAGTCTTTCCAGTCTG                          
rJMFF003A03+          TTTTTCATGTGTTTTGGCAAGTCTTTCCAGTCTGTAAATCAACTCTCCAAGTACTGCATC
                      ____________________________________________________________
consensus             TTTTTCATGTGTTTTGGCAAGTCTTTCCAGTCTGTAAATCAACTCTCCAAGTACTGCATC