Contig 013595:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003A03Sequence603003493 (5)ref|XP_009609663.1|3e-37PREDICTED: RNA-dependent RNA polymerase 6, partial [Nicotiana tomentosiformis]765013595 (3)emb|CDP13507.1|1e-88unnamed protein product [Coffea canephora]
JMFN004F15Sequence602013595 (3)emb|CDP13507.1|2e-77unnamed protein product [Coffea canephora]
JMSF048M05Sequence661003493 (5)ref|XP_009609663.1|2e-46PREDICTED: RNA-dependent RNA polymerase 6, partial [Nicotiana tomentosiformis]722013595 (3)emb|CDP13507.1|3e-85unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF048M05+ AAGAAGAATACCAAAACGTACAAGTCCAA
rJMFF003A03+ CCTGATTTTATGGGGAAAGAAGAATACCCAAACGTACAAGTCCAA
                      ____________________________________________________________
consensus CCTGATTTTATGGGGAAAGAAGAATACCCAAACGTACAAGTCCAA
 
. : . : . : . : . : . :
JMFN004F15- GAAAATGAAGG
rJMSF048M05+ G-AAATCTTGGGTAAACTGTACAGGAGAATTACAGATGCTTATGATGAAGAAAATGAAGG
rJMFF003A03+ GAAAATCTTGGGTAAACTGTACAGGAGAATTACAGATGCTTATGATGAAGAAAATGAAGG
                      ____________________________________________________________
consensus GAAAATCTTGGGTAAACTGTACAGGAGAATTACAGATGCTTATGATGAAGAAAATGAAGG
 
. : . : . : . : . : . :
JMFN004F15- AACATCCGGTGGGCCAATGTGCCTCCCAGAAGATGCATATGACCCCGACCTTGAGATTCC
rJMSF048M05+ AACATCCGGTGGGCCAATGTGCCTCCCAGAAGATGCATATGACCCCGACCTTGAGATTCC
rJMFF003A03+ AACATCCGGTGGGCCAATGTGCCTCCCAGAAGATGCATATGACCCCGACCTTGAGATTCC
                      ____________________________________________________________
consensus AACATCCGGTGGGCCAATGTGCCTCCCAGAAGATGCATATGACCCCGACCTTGAGATTCC
 
. : . : . : . : . : . :
JMFN004F15- CGGGTCAGAAACATTCTTTGAAGATGCATGGAGCTGTAAGTGTTCTTACGATGGTCAAGT
rJMSF048M05+ CGGGTCAGAAACATTCTTTGAAGATGCATGGAGCTGTAAGTGTTCTTACGATGGTCAAGT
rJMFF003A03+ CGGGTCAGAAACATTCTTTGAAGATGCATGGAGCTGTAAGTGTTCTTACGATGGTCAAGT
                      ____________________________________________________________
consensus CGGGTCAGAAACATTCTTTGAAGATGCATGGAGCTGTAAGTGTTCTTACGATGGTCAAGT
 
. : . : . : . : . : . :
JMFN004F15- AAACAGCCTTTTGGGGCAGTATAAGGTTAACAGAGAAGACGAAGTTGTTACTGGACATAT
rJMSF048M05+ AAACAGCCTTTTGGGGCAGTATAAGGTTAACAGAGAAGACGAAGTTGTTACTGGACATAT
rJMFF003A03+ AAACAGCCTTTTGGGGCAGTATAAGGTTAACAGAGAAGACGAAGTTGTTACTGGACATAT
                      ____________________________________________________________
consensus AAACAGCCTTTTGGGGCAGTATAAGGTTAACAGAGAAGACGAAGTTGTTACTGGACATAT
 
. : . : . : . : . : . :
JMFN004F15- ATGGTCCATGCCAAAGTACAGTAGCAACAAGATCGTCGATTTAAAGGAGAGACTAAAGCA
rJMSF048M05+ ATGGTCCATGCCAAAGTACAGTAGCAACAAGATCGTCGATTTAAAGGAGAGACTAAAGCA
rJMFF003A03+ ATGGTCCATGCCAAAGTACAGTAGCAACAAGATCGTCGATTTAAAGGAGAGACTAAAGCA
                      ____________________________________________________________
consensus ATGGTCCATGCCAAAGTACAGTAGCAACAAGATCGTCGATTTAAAGGAGAGACTAAAGCA
 
. : . : . : . : . : . :
JMFN004F15- CGCCTACAACAACCTGCGAAAGGACTTCAGGAAAGTTTTTGACCAATTCCCGCCAGATGT
rJMSF048M05+ CGCCTACAACAACCTGCGAAAGGACTTCAGGAAAGTTTTTGACCAATTCCCGCCAGATGT
rJMFF003A03+ CGCCTACAACAACCTGCGAAAGGACTTCAGGAAAGTTTTTGACCAATTCCCGCCAGATGT
                      ____________________________________________________________
consensus CGCCTACAACAACCTGCGAAAGGACTTCAGGAAAGTTTTTGACCAATTCCCGCCAGATGT
 
. : . : . : . : . : . :
JMFN004F15- TAACCAACTCTCAGACGACGAGAGGAATGCGTATTATGAACGAAAGGCATCAGCCTGGTA
rJMSF048M05+ TAACCAACTCTCAGACGACGAGAGGAATGCGTATTATGAACGAAAGGCATCAGCCTGGTA
rJMFF003A03+ TAACCAACTCTCAGACGACGAGAGGAATGCGTATTATGAACGAAAGGCATCAGCCTGGTA
                      ____________________________________________________________
consensus TAACCAACTCTCAGACGACGAGAGGAATGCGTATTATGAACGAAAGGCATCAGCCTGGTA
 
. : . : . : . : . : . :
JMFN004F15- TCAGGTGACCTACCATCGCGACTGGGTTAGTAAGTCTCTGGAGCTGCAACACCCCAATGA
rJMSF048M05+ TCAGGTGACCTACCATCGCGACTGGGTTAGTAAGTCTCTGGAGCTGCAACACCCCAATGA
rJMFF003A03+ TCAGGTGACCTACCATCGCGACTGGGTTAGTAAGTCTCTGGAGCTGCAACACCCCAATGA
                      ____________________________________________________________
consensus TCAGGTGACCTACCATCGCGACTGGGTTAGTAAGTCTCTGGAGCTGCAACACCCCAATGA
 
. : . : . : . : . : . :
JMFN004F15- GGCCGGGGGGTCGGTAATGTTAAGCTTCCCATGGATCGCAGCTGATTACCTTGCTATGAT
rJMSF048M05+ GGCCGGGGGGTCGGTAATGTTAAGCTTCCCATGGATCGCAGCTGATTACCTTGCTATGAT
rJMFF003A03+ GGCCGGGGGGTCGGTAATGTTAAGCTTCCCATGGATCGCAGCTGATTACCTTGCTATGAT
                      ____________________________________________________________
consensus GGCCGGGGGGTCGGTAATGTTAAGCTTCCCATGGATCGCAGCTGATTACCTTGCTATGAT
 
. : . : . : . : . : . :
JMFN004F15- CAAACTCCGGTGCAAGGGAATGGGAAATGCCGATTCCAGTAAGCCCATCAACGCCCTCCG
rJMSF048M05+ CAAACTCCGGTGCAAGGGAATGGGAAATGCCGATTCCAGTAAGCCCATCAACGCCCTCCG
rJMFF003A03+ CAAACTCCGGTGCAAGGGAATGGGAAATGCCGATTCCAGTAAGCCCATCAACGCCCTCCG
                      ____________________________________________________________
consensus CAAACTCCGGTGCAAGGGAATGGGAAATGCCGATTCCAGTAAGCCCATCAACGCCCTCCG
 
. : . : . : . : . : . :
JMFN004F15- AAAATACCTTGTCGACCGAATGTGAGTGATTCTGAGCCTTCAAACTACATT
rJMSF048M05+ AAAATACCTTGTCGACCGAATGTGAGTGATTCTGAGCCTTCAAACTACATTAAACCTTTA
rJMFF003A03+ AAAATACCTTGTCGACCGAATGTGAGTGATTCTGAGCCTTCAAACTACATTAAACCTTTA
                      ____________________________________________________________
consensus AAAATACCTTGTCGACCGAATGTGAGTGATTCTGAGCCTTCAAACTACATTAAACCTTTA
 
. : . : . : . : . : . :
rJMSF048M05+ TTTTTCATGTGTTTTGGCAAGTCTTTCCAGTCTG
rJMFF003A03+ TTTTTCATGTGTTTTGGCAAGTCTTTCCAGTCTGTAAATCAACTCTCCAAGTACTGCATC
                      ____________________________________________________________
consensus TTTTTCATGTGTTTTGGCAAGTCTTTCCAGTCTGTAAATCAACTCTCCAAGTACTGCATC