| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001K04 | Sequence | 536 | 010128 (7) | ref|XP_009766349.1| | 2e-15 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico | 756 | 013593 (7) | ref|XP_009766349.1| | 6e-111 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico |
| JMFF002I19 | Sequence | 619 | 010128 (7) | ref|XP_009766349.1| | 4e-46 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico | 785 | 013593 (7) | ref|XP_009766349.1| | 7e-96 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico |
| JMFF006F13 | Sequence | 524 | 010128 (7) | ref|XP_009766349.1| | 1e-56 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico | 742 | 013593 (7) | gb|EYU33796.1| | 2e-64 | hypothetical protein MIMGU_mgv1a006939mg [Erythranthe guttata] |
| JMFS087A02 | Sequence | 488 | 013593 (7) | ref|XP_009593112.1| | 4e-95 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic-like | |||||
| JMSF008A10 | Sequence | 232 | 010128 (7) | 789 | 013593 (7) | ref|XP_009766349.1| | 4e-103 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico | |||
| JMSF012P20 | Sequence | 273 | 010128 (7) | 756 | 013593 (7) | ref|XP_009766349.1| | 5e-117 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico | |||
| JMSF026B02 | Sequence | 653 | 010128 (7) | ref|XP_009766349.1| | 2e-51 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico | 784 | 013593 (7) | ref|XP_009766349.1| | 3e-101 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico |
This contig is upended
. : . : . : . : . : . :
JMFS087A02- CCACAGTTGAGAAGGCATCTGTGCACAAAAAGGGTGG
____________________________________________________________
consensus CCACAGTTGAGAAGGCATCTGTGCACAAAAAGGGTGG
. : . : . : . : . : . :
JMFS087A02- TGCAAAGAAGGTTGTCATCTCAGCTCCATCTGCTGATGCACCTATGTTTGTGGTGGGTGT
____________________________________________________________
consensus TGCAAAGAAGGTTGTCATCTCAGCTCCATCTGCTGATGCACCTATGTTTGTGGTGGGTGT
. : . : . : . : . : . :
JMFS087A02- TAATGAGAACACATACAAAACAACCATGGATGTCGTTTCCAATGCCAGTTGTACCACCAA
rJMSF012P20+ AATGCCAGTTGTACCACCAA
____________________________________________________________
consensus TAATGAGAACACATACAAAACAACCATGGATGTCGTTTCCAATGCCAGTTGTACCACCAA
. : . : . : . : . : . :
JMFS087A02- TTGCCTTGCTCCTTTGGCCAAGGTGGTTCACGAGGAGTTTGGCATTGTAGAGGGTTTAAT
rJMSF012P20+ TTGCCTTGCTCCTTTGGCCAAGGTGGTTCACGAGGAGTTTGGCATTGTAGAGGGTTTAAT
rJMFF001K04+ TGCCTTGCTCCTTTGGCCAAGGTGGTTCACGAGGAGTTTGGCATTGTAGAGGGTTTAAT
rJMSF026B02+ CGAGGAGTTNGGCATTGTAGAGGGTTTAAT
rJMSF008A10+ GTTCACGAGGAGTTNGGCATTGTAGAGGGTTTAAT
rJMFF002I19+ TTTAAT
____________________________________________________________
consensus TTGCCTTGCTCCTTTGGCCAAGGTGGTTCACGAGGAGTTTGGCATTGTAGAGGGTTTAAT
. : . : . : . : . : . :
JMFS087A02- GACAACTGTGCACGCTACCACAGCCACACAAAAGACAGTTGATGGCCCTTCCATGAAGGA
rJMSF012P20+ GACAACTGTGCACGCTACCACAGCCACACAAAAGACAGTTGATGGCCCTTCCATGAAGGA
rJMFF001K04+ GACAACTGTGCACGCTACCACAGCCACACAAAAGACAGTTGATGGCCCTTCCATGAAGGA
rJMSF026B02+ GACAACTGTGCACGCTACCACAGCCACACAAAAGACAGTTGATGGCCCTTCCATGAAGGA
rJMSF008A10+ GACAACTGTGCACGCTACCACAGCCACACAAAAGACAGTTGATGGCCCTTCCATGAAGGA
rJMFF006F13+ CAGTTGATGGCCNTTCCATGAAGGA
rJMFF002I19+ GACAACTGTGCACGCTACCACAGCCACACAAAAGACAGTTGATGGCCCTTCCATGAAGGA
____________________________________________________________
consensus GACAACTGTGCACGCTACCACAGCCACACAAAAGACAGTTGATGGCCCTTCCATGAAGGA
. : . : . : . : . : . :
JMFS087A02- -TTGGCGGGGAGGCCGTGGAGCTGGGCAAAACATAATCCCCAGCTCAACTGGTGCTGCAA
rJMSF012P20+ -TTGGCGGGGAGGCCGTGGAGCTGGGCAAAACATAATCCCCAGCTCAACTGGGGCTGCAA
rJMFF001K04+ -TTGGCGGGGAGGCCGTGGAGCTGGGCAAAACATAATCCCCAGCTCAACTGGGGCTGCAA
rJMSF026B02+ -TTGGCGGGGAGGCCGTGGAGCTGGGCAAAACATAATCCCCAGCTCAACTGGGGCTGCAA
rJMSF008A10+ -TTGGCGGGGAGGCCGTGGAGCTGGGCAAAACATAATCCCCAGCTCAACTGGGGCTGCAA
rJMFF006F13+ TTTGGCGGGGAGGCCGTGGAGCTGGGCAAAACATAATCCCCAGCTCAACTGGGGCTGCAA
rJMFF002I19+ -TTGGCGGGGAGGCCGTGGAGCTGGGCAAAACATAATCCCCAGCTCAACTGGGGCTGCAA
____________________________________________________________
consensus -TTGGCGGGGAGGCCGTGGAGCTGGGCAAAACATAATCCCCAGCTCAACTGGGGCTGCAA
. : . : . : . : . : . :
JMFS087A02- AGGCTGTTGGAAAAGTTCTTCCAGCACTTAATGGTAAGCTCACTGGAATGGCCTTCCGTG
rJMSF012P20+ AGGCTGTTGGAAAAGTTCTTCCAGCACTTAATGGTAAGCTCACTGGAATGGCCTTCCGTG
rJMFF001K04+ AGGCTGTTGGAAAAGTTCTTCCAGCACTTAATGGTAAGCTCACTGGAATGGCCTTCCGTG
rJMSF026B02+ AGGCTGTTGGAAAAGTTCTTCCAGCACTTAATGGTAAGCTCACTGGAATGGCCTTCCGTG
rJMSF008A10+ AGGCTGTTGGAAAAGTTCTTCCAGCACTTAATGGTAAGCTCACTGGAATGGCCTTCCGTG
rJMFF006F13+ AGGCTGTTGGAAAAGTTCTTCCAGCACTTAATGGTAAGCTCACTGGAATGGCCTTCCGTG
rJMFF002I19+ AGGCTGTTGGAAAAGTTCTTCCAGCACTTAATGGTAAGCTCACTGGAATGGCCTTCCGTG
____________________________________________________________
consensus AGGCTGTTGGAAAAGTTCTTCCAGCACTTAATGGTAAGCTCACTGGAATGGCCTTCCGTG
. : . : . : . : . : . :
JMFS087A02- TTCCCACACCTAATGTCTCTGTTGTAGACCTAACTTGTCGGCTGGAGAAGAGTGCTTCTT
rJMSF012P20+ TTCCCACACCTAATGTCTCTGTTGTAGACCTAACTTGTCGGCTGGAGAAGAGTGCTTCTT
rJMFF001K04+ TTCCCACACCTAATGTCTCTGTTGTAGACCTAACTTGTCGGCTGGAGAAGAGTGCTTCTT
rJMSF026B02+ TTCCCACACCTAATGTCTCTGTTGTAGACCTAACTTGTCGGCTGGAGAAGAGTGCTTCTT
rJMSF008A10+ TTCCCACACCTAATGTCTCTGTTGTAGACCTAACTTGTCGGCTGGAGAAGAGTGCTTCTT
rJMFF006F13+ TTCCCACACCTAATGTCTCTGT--TAGACCTAACTTGTCGGCTGGAGGAGAGTGCTTCTT
rJMFF002I19+ TTCCCACACCTAATGTCTCTGTTGTAGACCTAACTTGTCGGCTGGAGAAGAGTGCTTCTT
____________________________________________________________
consensus TTCCCACACCTAATGTCTCTGTTGTAGACCTAACTTGTCGGCTGGAGAAGAGTGCTTCTT
. : . : . : . : . : . :
JMFS087A02- ATGAGGATGTCAAAGCAGTCATAAAGTATGCA
rJMSF012P20+ ATGAGGATGTCAAAGCAGTCATAAAGTATGCATCGGAAGGTCCACTGAAGGGCATTCTTG
rJMFF001K04+ ATGAGGATGTCAAAGCAGTCATAAAGTATGCATCGGAAGGTCCACTGAAGGGCATTCTTG
rJMSF026B02+ ATGAGGATGTCAAAGCAGTCATAAAGTATGCATCGGAAGGTCCACTGAAGGGCATTCTTG
rJMSF008A10+ ATGAGGATGTCAAAGCAGTCATAAAGTATGCATCGGAAGGTCCACTGAAGGGCATTCTTG
rJMFF006F13+ ATGAGGATGTCAAAGCAGTCATAAAGTATGCATCGGAAGGTCCACTGAAGGGCATTCTTG
rJMFF002I19+ ATGAGGATGTCAAAGCAGTCATAAAGTATGCATCGGAAGGTCCACTGAAGGGCATTCTTG
____________________________________________________________
consensus ATGAGGATGTCAAAGCAGTCATAAAGTATGCATCGGAAGGTCCACTGAAGGGCATTCTTG
. : . : . : . : . : . :
rJMSF012P20+ GATACACAGATGAAGATGTTGTATCAAATGATTTTGTTGGTGATTCCAGGTCAAGCATTT
rJMFF001K04+ GATACACAGATGAAGATGTTGTATCAAATGATTTTGTTGGTGATTCCAGGTCAAGCATTT
rJMSF026B02+ GATACACAGATGAAGATGTTGTATCAAATGATTTTGTTGGTGATTCCAGGTCAAGCATTT
rJMSF008A10+ GATACACAGATGAAGATGTTGTATCAAATGATTTTGTTGGTGATTCCAGGTCAAGCATTT
rJMFF006F13+ GATACACAGATGAAGATGTTGTATCAAATGATTTTGTTGGTGATTCCAGGTCAAGCATTT
rJMFF002I19+ GATACACAGATGAAGATGTTGTATCAAATGATTTTGTTGGTGATTCCAGGTCAAGCATTT
____________________________________________________________
consensus GATACACAGATGAAGATGTTGTATCAAATGATTTTGTTGGTGATTCCAGGTCAAGCATTT
. : . : . : . : . : . :
rJMSF012P20+ TTGATGCCAAGGCTGGTATAGGTTTGAACGACTCTCTCATGAAGCTTGTGTCCTGGTATG
rJMFF001K04+ TTGATGCCAAGGCTGGTATAGGTTTGAACGACTCTCTCATGAAGCTTGTGTCCTGGTATG
rJMSF026B02+ TTGATGCCAAGGCTGGTATAGGTTTGAACGACTCTCTCATGAAGCTTGTGTCCTGGTATG
rJMSF008A10+ TTGATGCCAAGGCTGGTATAGGTTTGAACGACTCTCTCATGAAGCTTGTGTCCTGGTATG
rJMFF006F13+ TTGATGCCAAGGCTGGTATAGGTTTGAACGACTCTCTCATGAAGCTTGTGTCCTGGTATG
rJMFF002I19+ TTGATGCCAAGGCTGGTATAGGTTTGAACGACTCTCTCATGAAGCTTGTGTCCTGGTATG
____________________________________________________________
consensus TTGATGCCAAGGCTGGTATAGGTTTGAACGACTCTCTCATGAAGCTTGTGTCCTGGTATG
. : . : . : . : . : . :
rJMSF012P20+ ATAACGAGTGGGGTTACAGCAATCGGGTGTTGGATTTGATAGAGCACATGGCATTGGTTG
rJMFF001K04+ ATAACGAGTGGGGTTACAGCAATCGGGTGTTGGATTTGATAGAGCACATGGCATTGGTTG
rJMSF026B02+ ATAACGAGTGGGGTTACAGCAATCGGGTGTTGGATTTGATAGAGCACATGGCATTGGTTG
rJMSF008A10+ ATAACGAGTGGGGTTACAGCAATCGGGTGTTGGATTTGATAGAGCACATGGCATTGGTTG
rJMFF006F13+ ATAACGAGTGGGGTTACAGCAATCGGGTGTTGGATTTGATAGAGCACATGGCATTGGTTG
rJMFF002I19+ ATAACGAGTGGGGTTACAGCAATCGGGTGTTGGATTTGATAGAGCACATGGCATTGGTTG
____________________________________________________________
consensus ATAACGAGTGGGGTTACAGCAATCGGGTGTTGGATTTGATAGAGCACATGGCATTGGTTG
. : . : . : . : . : . :
rJMSF012P20+ CTGCTGCTACCACCAACTGAATACCAGAGATGGCCAAGGTTGCAAGCAACATTAGCTAGC
rJMFF001K04+ CTGCTGCTACCACCAACTGAATACCAGAGATGGCCAAGGTTGCAAGCAACATTAGCTAGC
rJMSF026B02+ CTGCTGCTACCACCAACTGAATACCAGAGATGGCCAAGGTTGCAAGCAACATTAGCTAGC
rJMSF008A10+ CTGCTGCTACCACCAACTGAATACCAGAGATGGCCAAGGTTGCAAGCAACATTAGCTAGC
rJMFF006F13+ CTGCTGCTACCACCAACTGAATACCAGAGATGGCCAAGGTTGCAAGCAACATTAGCTAGC
rJMFF002I19+ CTGCTGCTACCACCAACTGAATACCAGAGATGGCCAAGGTTGCAAGCAACATTAGCTAGC
____________________________________________________________
consensus CTGCTGCTACCACCAACTGAATACCAGAGATGGCCAAGGTTGCAAGCAACATTAGCTAGC
. : . : . : . : . : . :
rJMSF012P20+ TAGGCTATAGAGGAGAATTGAATTGTGTAGGGAGTGGTCAGATTTGTTGTGGGAGTCCCC
rJMFF001K04+ TAGGCTATAGAGGAGAATTGAATTGTGTAGGGAGTGGTTAGATTTGTTGTGGGAGTCCCC
rJMSF026B02+ TAGGCTATAGAGGAGAATTGAATTGTGTAGGGAGTGGTTAGATTTGTTGTGGGAGTCCCC
rJMSF008A10+ TAGGCTATAGAGGAGAATTGAATTGTGTAGGGAGTGGTTAGATTTGTTGTGGGAGTCCCC
rJMFF006F13+ TAGGCTATAGAGGAGAATTGAATTGTGTAGGGAGTGGTTAGATTTGTTGTGGGAGTCCCC
rJMFF002I19+ TAGGCTATAGAGGAGAATTGAATTGTGTAGGGAGTGGTTAGATTTGTTGTGGGAGTCCCC
____________________________________________________________
consensus TAGGCTATAGAGGAGAATTGAATTGTGTAGGGAGTGGTTAGATTTGTTGTGGGAGTCCCC
. : . : . : . : . : . :
rJMSF012P20+ TTTTTGTTTCTGAATGGACTACATCCATAAAAATAACGAATAATTGGGCTTGTATTACAG
rJMFF001K04+ TTTTTGTTTCTGAATGGACTACATCCATAAAAATAACGAATAATTGGGCTTGTATTACAG
rJMSF026B02+ TTTTTGTTTCTGAATGGACTACATCCATAAAAATAACGAATAATTGGGCTTGTATTACAG
rJMSF008A10+ TTTTTGTTTCTGAATGGACTACATCCATAAAAATAACGAATAATTGGGCTTGTATTACAG
rJMFF006F13+ TTTTTGTTTCTGAATGGACTACATCCATAAAAATAACGAATAATTGGGCTTGTATTACAG
rJMFF002I19+ TTTTTGTTTCTGAATGGACTACATCCATAAAAATAACGAATAATTGGGCTTGTATTACAG
____________________________________________________________
consensus TTTTTGTTTCTGAATGGACTACATCCATAAAAATAACGAATAATTGGGCTTGTATTACAG
. : . : . : . : . : . :
rJMSF012P20+ AAAGACTTATTTATTTT
rJMFF001K04+ AAAGACTTATTTATTTTTTCGTTCAATATTTCGTAACA
rJMSF026B02+ AAAGACTTATTTATTTTTTCGTTCAATATTTCGTAACATTACGCTTTTTGAGGTTGCCTA
rJMSF008A10+ AAAGACTTATTTATTTTTTCGTTCAATATTTCGTAACATTACGCTTTTTGAGGTTGCCTA
rJMFF006F13+ AAAGACTTATTTATTTTTTCGTTCAATATTTCGTAACATTACGCTTTTTGAGGTTGCCTA
rJMFF002I19+ AAAGACTTATTTATTTTTTCGTTCAATATTTCGTAACATTACGCTTTTTGAGGTTGCCTA
____________________________________________________________
consensus AAAGACTTATTTATTTTTTCGTTCAATATTTCGTAACATTACGCTTTTTGAGGTTGCCTA
. : . : . : . : . : . :
rJMSF026B02+ AATAATGAGGTTTGCCATTATGTATTGATATCAAT
rJMSF008A10+ AATAATGAGGTTTGCCATTATGTATTGATATCAAT
rJMFF006F13+ AATAATGAGGTTTGCCATTATGTATTGATATCAATTTTAGTCCTATGAGTATTAGTAAA
rJMFF002I19+ AATAATGAGGTTTGCCATTATGTATTGATATCAATTTTAGTCCTATGAGTATTAGTAAAA
____________________________________________________________
consensus AATAATGAGGTTTGCCATTATGTATTGATATCAATTTTAGTCCTATGAGTATTAGTAAAA