Contig 013587:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS132D08Sequence625013587 (3)ref|XP_004239009.1|1e-69PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Solanum lycopersicum]
JMSF010C03Sequence298013587 (3)755008458 (2)sp|Q8L6J4.2|RPO1A_TOBAC4e-43RecName: Full=DNA-directed RNA polymerase 1A; AltName: Full=NictaRpoT1-syl; Alt
JMSF052H19Sequence654013587 (3)gb|EYU28900.1|2e-24hypothetical protein MIMGU_mgv1a000798mg [Erythranthe guttata]834008458 (2)sp|Q8L6J4.2|RPO1A_TOBAC6e-67RecName: Full=DNA-directed RNA polymerase 1A; AltName: Full=NictaRpoT1-syl; Alt

Alignment

This contig is upended


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JMFS132D08+                                                 GCCATCATTTCAGCAGGGAGAT
                      ____________________________________________________________
consensus                                                   GCCATCATTTCAGCAGGGAGAT
 
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JMFS132D08+           GAGTGAAAAAGGGAACATGGCCTAGTTTGATCTTCCCTTCTAAACAAGCCGTCTGTTCTG
                      ____________________________________________________________
consensus             GAGTGAAAAAGGGAACATGGCCTAGTTTGATCTTCCCTTCTAAACAAGCCGTCTGTTCTG
 
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JMFS132D08+           CAGCTATGGCATCTTTCAAAGGCTCAAACCAACCTAGGAACAATGATTTCACGTAAGGCA
                      ____________________________________________________________
consensus             CAGCTATGGCATCTTTCAAAGGCTCAAACCAACCTAGGAACAATGATTTCACGTAAGGCA
 
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JMFS132D08+           AATTGGGAGCTAGTTTCTGCTCACACATATCTGTCAAAAGCTCCTGATACTCCTTTGCCG
                      ____________________________________________________________
consensus             AATTGGGAGCTAGTTTCTGCTCACACATATCTGTCAAAAGCTCCTGATACTCCTTTGCCG
 
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JMFS132D08+           CCTCTTCCCATGCCTCGGTCTCAATCTTTATTTGCCTCTTCTTCAGCACACTATACTTCC
JMSF052H19+                 CCCATGCCTCGGTCTCAATCTTTATTTGCNTCTTCTTCAGCACACTATACTTCC
                      ____________________________________________________________
consensus             CCTCTTCCCATGCCTCGGTCTCAATCTTTATTTGCCTCTTCTTCAGCACACTATACTTCC
 
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JMFS132D08+           AAA-CACCCATCCCCCCAATGGTCTTCGGCTGTTTTTGTTGTTTCGCCGTCATCGTCTCC
JMSF052H19+           AAANCACCCATCCCCCCAATGGTCTTCGGCTGTTTTTGTTGTTTCGCCGTCATCGTCTCC
                      ____________________________________________________________
consensus             AAANCACCCATCCCCCCAATGGTCTTCGGCTGTTTTTGTTGTTTCGCCGTCATCGTCTCC
 
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JMFS132D08+           TCATTATGTCTGTTCATTTCCTCAATTAGCTCCTGAACCTCGTCGACATCTTCCTCGGAG
JMSF052H19+           TCATTATGTCTGTTCATTTCCTCAATTAGCTCCTGAACCTCGTCGACATCTTCCTCGGAG
                      ____________________________________________________________
consensus             TCATTATGTCTGTTCATTTCCTCAATTAGCTCCTGAACCTCGTCGACATCTTCCTCGGAG
 
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JMFS132D08+           GTCGAAGCTAAAGCCTCAGCTACACTTGCATAACCCCTGGAAGTCCCAAAAATCCCAGGA
JMSF052H19+           GTCGAAGCTAAAGCCTCAGCTACACTTGCATAACCCCTGGAAGTCCCAAAAATCCCAGGA
                      ____________________________________________________________
consensus             GTCGAAGCTAAAGCCTCAGCTACACTTGCATAACCCCTGGAAGTCCCAAAAATCCCAGGA
 
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JMFS132D08+           AAATTGCTCCAAACACCAAAATCACCTCGAGAAAAATGTGAACTTTGAGCAAAACCTAGC
JMSF010C03+                                                                  CTAGC
JMSF052H19+           AAATTGCTCCAAACACCAAAATCACCTCGAGAAAAATGTGAACTTTGAGCAAAACCTAGC
                      ____________________________________________________________
consensus             AAATTGCTCCAAACACCAAAATCACCTCGAGAAAAATGTGAACTTTGAGCAAAACCTAGC
 
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JMFS132D08+           TCTTTGTACATACAAACCGCATGCTCTTCGCCTCTTCCATCTCTGATCTTCTCAGACAAT
JMSF010C03+           TCTTTGTACATACAAACCGCATGCTCTTCGCCTCTTCCATCTCTGATCTTCTCAGACAAT
JMSF052H19+           TCTTTGTACATACAAACCGCATGCTCTTCGCCTCTTCCATCTCTGATCTTCTCAGACAAT
                      ____________________________________________________________
consensus             TCTTTGTACATACAAACCGCATGCTCTTCGCCTCTTCCATCTCTGATCTTCTCAGACAAT
 
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JMFS132D08+           TGAGAAGGTTGAAAAGCCCCTAAGGAAGAGAATAGAGGATGAGACTCAGAAAATAACTTA
JMSF010C03+           TGAGAAGGTTGAAAAGCCCCTAAGGAAGAGAATAGAGGATGAGACTCAGAAAATAACTTA
JMSF052H19+           TGAGAAGGTTGAAAAGCCCCTAAGGAAGAGAATAGAGGATGAGACTCAGAAAATAACTTA
                      ____________________________________________________________
consensus             TGAGAAGGTTGAAAAGCCCCTAAGGAAGAGAATAGAGGATGAGACTCAGAAAATAACTTA
 
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JMFS132D08+           TATT                                                        
JMSF010C03+           TATTTCCTTAAAGAAGCTTGCTTTGATAAATTTCTCCACATGTTAAGCTATGGAGGTCTA
JMSF052H19+           TATTTCCTTAAAGAAGCTTGCTTTGATAAATTTCTCCACATGTTAAGCTATGGAGGTCTA
                      ____________________________________________________________
consensus             TATTTCCTTAAAGAAGCTTGCTTTGATAAATTTCTCCACATGTTAAGCTATGGAGGTCTA
 
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JMSF010C03+           TAAGCGCTGAGAAATTCCGAGCTCAAATGCGGTGGCGCGAGTCGCAGTGAGAAATTCCGA
JMSF052H19+           TAAGCGCTGAGAAATTCCGAGCTCAAATGCGGTGGCGCGAGTCGCAGTGAGAAATTCCGA
                      ____________________________________________________________
consensus             TAAGCGCTGAGAAATTCCGAGCTCAAATGCGGTGGCGCGAGTCGCAGTGAGAAATTCCGA
 
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JMSF010C03+           GCTCAGATGCGGTGGCGCGAGTCGCAGTCTTCAAGAGCCGCCTTAAAC            
JMSF052H19+           GCTCAGATGCGGTGGCGCGAGTCGCAGTCTTCAAGAGCCGCCTTAAACCCCTCTAAAAAC
                      ____________________________________________________________
consensus             GCTCAGATGCGGTGGCGCGAGTCGCAGTCTTCAAGAGCCGCCTTAAACCCCTCTAAAAAC
 
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JMSF052H19+           CTAGTATTGCCTCTCTTACAATTGGATTCCAGATTTACCCATGAATCCCAATGGGCTACC
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consensus             CTAGTATTGCCTCTCTTACAATTGGATTCCAGATTTACCCATGAATCCCAATGGGCTACC