Contig 013585:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035I19Sequence569013585 (3)
JMSF022D24Sequence626013585 (3)787018203ref|XP_009587443.1|4e-56PREDICTED: la-related protein 1C-like [Nicotiana tomentosiformis]
JMSF052D14Sequence725013585 (3)emb|CDP01856.1|1e-06unnamed protein product [Coffea canephora]809017289ref|XP_006361948.1|1e-20PREDICTED: uncharacterized HTH La-type RNA-binding protein C1527.03-like isofor

Alignment

This contig is upended


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JMSF052D14+                                                                  TGCCC
                      ____________________________________________________________
consensus                                                                    TGCCC
 
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JMSF022D24+                                                   CCAAGCTGGNTTCTTTACAG
JMSF052D14+           CCATCACAGGACCGGCCTCGGTAGAACCATTAGGTTTGTTCCAAGCTGGCTTCTTTACAG
                      ____________________________________________________________
consensus             CCATCACAGGACCGGCCTCGGTAGAACCATTAGGTTTGTTCCAAGCTGGCTTCTTTACAG
 
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JMSF022D24+           CATTGTTGCCACTGTCANTATTCTCAAAGCTNTCAGGNTGAGCTTCAGTAGCAGCATCCT
JMSF052D14+           CATTGTTGCCACTGTCACTATTCTCAAAGCTCTCAGGCTGAGCTTCAGTAGCAGCATCCT
                      ____________________________________________________________
consensus             CATTGTTGCCACTGTCACTATTCTCAAAGCTCTCAGGCTGAGCTTCAGTAGCAGCATCCT
 
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JMSF022D24+           GCAACAATGGCAGAGGCGAATTCCCAGTTGCCCAACCAGAGACGCTATCCATGTGCTCTT
JMFF035I19+                                         CCCAACCAGAGACGCTATCCATGTGCTCTT
JMSF052D14+           GCAACAATGGCAGAGGCGAATTCCCAGTTGCCCAACCAGAGACGCTATCCATGTGCTCTT
                      ____________________________________________________________
consensus             GCAACAATGGCAGAGGCGAATTCCCAGTTGCCCAACCAGAGACGCTATCCATGTGCTCTT
 
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JMSF022D24+           GAGCAACACTAGTCGAAGGAGAAGGTGGGCATTGAGGAGGGATCACCACCACAGGCACTA
JMFF035I19+           GAGCAACACTAGTCGAAGGAGAAGGTGGGCATTGAGGAGGGATCACCACCACAGGCACTA
JMSF052D14+           GAGCAACACTAGTCGAAGGAGAAGGTGGGCATTGAGGAGGGATCACCACCACAGGCACTA
                      ____________________________________________________________
consensus             GAGCAACACTAGTCGAAGGAGAAGGTGGGCATTGAGGAGGGATCACCACCACAGGCACTA
 
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JMSF022D24+           ATTCCGATTCGCCAACTATCTGAGTCCAGCGCCGAGACTTGGGACTACTGACCCCGCCGG
JMFF035I19+           ATTCCGATTCGCCAACTATCTGAGTCCAGCGCCGAGACTTGGGACTACTGACCCCGCCGG
JMSF052D14+           ATTCCGATTCGCCAACTATCTGAGTCCAGCGCCGAGACTTGGGACTACTGACCCCGCCGG
                      ____________________________________________________________
consensus             ATTCCGATTCGCCAACTATCTGAGTCCAGCGCCGAGACTTGGGACTACTGACCCCGCCGG
 
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JMSF022D24+           CGGTGGCGGCGGCGGCGTTTAGTGCAGTTGGAGCAGTAGGGGTAGGGTTAGAGGAAGCGG
JMFF035I19+           CGGTGGCGGCGGCGGCGTTTAGTGCAGTTGGAGCAGTAGGGGTAGGGTTAGAGGAAGCGG
JMSF052D14+           CGGTGGCGGCGGCGGCGTTTAGTGCAGTTGGAGCAGTAGGGGTAGGGTTAGAGGAAGCGG
                      ____________________________________________________________
consensus             CGGTGGCGGCGGCGGCGTTTAGTGCAGTTGGAGCAGTAGGGGTAGGGTTAGAGGAAGCGG
 
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JMSF022D24+           TAGCCATCGGTGAAAATTAGGGTTTGCTTTCTCTGAAAGCTCGGAAATCCAAAAATTGAT
JMFF035I19+           TAGCCATCGGTGAAAATTAGGGTTTGCTTTCTCTGAAAGCTCGGAAATCCAAAAATTGAT
JMSF052D14+           TAGCCATCGGTGAAAATTAGGGTTTGCTTTCTCTGAAAGCTCGGAAATCCAAAAATTGAT
                      ____________________________________________________________
consensus             TAGCCATCGGTGAAAATTAGGGTTTGCTTTCTCTGAAAGCTCGGAAATCCAAAAATTGAT
 
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JMSF022D24+           AATAAGCTTCCAAATTAGGGTTTCAAAATCAGAGTAAAATCTTCTAATCTAAAGATCATA
JMFF035I19+           AATAAGCTTCCAAATTAGGGTTTCAAAATCAGAGTAAAATCTTCTAATCTAAAGATCATA
JMSF052D14+           AATAAGCTTCCAAATTAGGGTTTCAAAATCAGAGTAAAATCTTCTAATCTAAAGATCATA
                      ____________________________________________________________
consensus             AATAAGCTTCCAAATTAGGGTTTCAAAATCAGAGTAAAATCTTCTAATCTAAAGATCATA
 
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JMSF022D24+           AACAAACGAAATAACAAATTCCAAACAATAAAAAGAATCAAGACTTTCCCAAGATAAAGA
JMFF035I19+           AACAAACGAAATAACAAATTCCAAACAATAAAAAGAATCAAGACTTTCCCAAGATAAAGA
JMSF052D14+           AACAAACGAAATAACAAATTCCAAACAATAAAAAGAATCAAGACTTTCCCAAGATAAAGA
                      ____________________________________________________________
consensus             AACAAACGAAATAACAAATTCCAAACAATAAAAAGAATCAAGACTTTCCCAAGATAAAGA
 
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JMSF022D24+           TTTTAGGCCGATCAGTAAGAAAGATCCAATAGGTCGGTGAAGAGGCAATCGGTCTCGAGC
JMFF035I19+           TTTTAGGCCGATCAGTAAGAAAGATCCAATAGGTCGGTGAAGAGGCAATCGGTCTCGAGC
JMSF052D14+           TTTTAGGCCGATCAGTAAGAAAGATCCAATAGGTCGGTGAAGAGGCAATCGGTCTCGAGC
                      ____________________________________________________________
consensus             TTTTAGGCCGATCAGTAAGAAAGATCCAATAGGTCGGTGAAGAGGCAATCGGTCTCGAGC
 
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JMSF022D24+           GCTTCAACCGCACCGTCACAGCACAAGAGGAGGACTCTCTCTCCTCTCCTCTCCTCTCCT
JMFF035I19+           GCTTCAACCGCACCGTCACAGCACAAGAGGAGGACTCTCTCTCCTCTCCTCTCCTCTCCT
JMSF052D14+           GCTTCAACCGCACCGTCACAGCACAAGAGGAGGACTCTCTCTCCTCTCCTCTCCTCTCCT
                      ____________________________________________________________
consensus             GCTTCAACCGCACCGTCACAGCACAAGAGGAGGACTCTCTCTCCTCTCCTCTCCTCTCCT
 
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JMSF022D24+           CTCCTC                                                      
JMFF035I19+           CTCCTCTCCTCTCTTCTCCTCTACTGCTACGTTTTGTTTTAGTCCTTTTCCTCTACAT  
JMSF052D14+           CTCCTCTCCTCTCTTCTCCTCTACTGCTACGTTTTGTTTTAGTCCTTTTCCTCTACATAC
                      ____________________________________________________________
consensus             CTCCTCTCCTCTCTTCTCCTCTACTGCTACGTTTTGTTTTAGTCCTTTTCCTCTACATAC