| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005A11 | Sequence | 512 | 013584 (8) | ref|NP_001169011.1| | 3e-59 | uncharacterized LOC100382843 [Zea mays] gb|ACN31032.1| unknown [Zea mays] tpg|DA | 762 | 013584 (8) | ref|XP_004253089.1| | 2e-68 | PREDICTED: PHD finger protein ALFIN-LIKE 4 [Solanum lycopersicum] |
| JMFF005P04 | Sequence | 447 | 013584 (8) | ref|NP_001169011.1| | 2e-44 | uncharacterized LOC100382843 [Zea mays] gb|ACN31032.1| unknown [Zea mays] tpg|DA | 730 | 013584 (8) | ref|XP_004253089.1| | 2e-58 | PREDICTED: PHD finger protein ALFIN-LIKE 4 [Solanum lycopersicum] |
| JMFF010A11 | Sequence | 563 | 013584 (8) | ref|XP_004253089.1| | 3e-29 | PREDICTED: PHD finger protein ALFIN-LIKE 4 [Solanum lycopersicum] | |||||
| JMFF030A20 | Sequence | 512 | 013584 (8) | gb|ABK25484.1| | 3e-75 | unknown [Picea sitchensis] | 525 | 013584 (8) | ref|XP_004253089.1| | 2e-27 | PREDICTED: PHD finger protein ALFIN-LIKE 4 [Solanum lycopersicum] |
| JMSF052B07 | Sequence | 686 | 013584 (8) | ref|XP_010091959.1| | 2e-81 | PHD finger protein ALFIN-LIKE 5 [Morus notabilis] gb|EXB48289.1| PHD finger prot | 903 | 011747 (9) | ref|XP_002276939.1| | 1e-40 | PREDICTED: exosome complex exonuclease RRP44 [Vitis vinifera] emb|CBI21569.3| un |
This contig is upended
. : . : . : . : . : . :
rJMFF030A20- ATAATATACAGGCCATTAAACATCATTCTAAATA
rJMFF010A11- ATTATAATATACAGGCCATTAAACATCATTCTAAATA
____________________________________________________________
consensus ATTATAATATACAGGCCATTAAACATCATTCTAAATA
. : . : . : . : . : . :
rJMFF030A20- TGTAATTAAGTATGACATAAAATCCTTGAAATAAAGCATTGGTAAAAATGGCTTCCGGTC
rJMFF010A11- TGTAATTAAGTATGACATAAAATCCTTGAAATAAAGCATTGGTAAAAATGGCTTCCGGTC
rJMFF005A11- GTATGACATAAAATCCTTGAAATAAAGCATTGGTAAAAATGGCTTCCGGTC
rJMFF005P04- GTATGACATAAAATCCTTGAAATAAAGCATTGGTAAAAATGGCTTCCGGTC
____________________________________________________________
consensus TGTAATTAAGTATGACATAAAATCCTTGAAATAAAGCATTGGTAAAAATGGCTTCCGGTC
. : . : . : . : . : . :
rJMFF030A20- AAGAATCAGACAGCCAGAGCGAGTAACTTAACGGTTCAAGTACATGACTAAAAGTGTTTT
rJMFF010A11- AAGAATCAGACAGCCAGAGCGAGTAACTTAACGGTTCAAGTACATGACTAAAAGTGTTTT
rJMFF005A11- AAGAATCAGACAGCCAGAGCGAGTAACTTAACGGTTCAAGTACATGACTAAAAGTGTTTT
rJMFF005P04- AAGAATCAGACAGCCAGAGCGAGTAACTTAACGGTTCAAGTACATGACTAAAAGTGTTTT
____________________________________________________________
consensus AAGAATCAGACAGCCAGAGCGAGTAACTTAACGGTTCAAGTACATGACTAAAAGTGTTTT
. : . : . : . : . : . :
rJMFF030A20- TTCCCTCCTACATAAACATACTGCCATGTAAGCTTGATGATAATTTAAACATTAACTGCA
rJMFF010A11- TTCCCTCCTACATAAACATACTGCCATGTAAGCTTGATGATAATTTAAACATTAACTGCA
rJMFF005A11- TTCCCTCCTACATAAACATACTGCCATGTAAGCTTGATGATAATTTAAACATTAACTGCA
rJMFF005P04- TTCCCTCCTACATAAACATACTGCCATGTAAGCTTGATGATAATTTAAACATTAACTGCA
____________________________________________________________
consensus TTCCCTCCTACATAAACATACTGCCATGTAAGCTTGATGATAATTTAAACATTAACTGCA
. : . : . : . : . : . :
rJMFF030A20- ACCTAAAATGTTTAACAGGCTCCAGAAATAGGTGCAGATTCTGCCCGGTGAAAATTCTCA
rJMFF010A11- ACCTAAAATGTTTAACAGGCTCCAGAAATAGGTGCAGATTCTGCCCGGTGAAAATTCTCA
rJMFF005A11- ACCTAAAATGTTTAACAGGCTCCAGAAATAGGTGCAGATTCTGCCCGGTGAAAATTCTCA
rJMFF005P04- ACCTAAAATGTTTAACAGGCTCCAGAAATAGGTGCAGATTCTGCCCGGTGAAAATTCTCA
____________________________________________________________
consensus ACCTAAAATGTTTAACAGGCTCCAGAAATAGGTGCAGATTCTGCCCGGTGAAAATTCTCA
. : . : . : . : . : . :
rJMFF030A20- AATAGGGTTTGTCAAGGACCCATGCGTGCTTTCTTGCTATTAGTACAAGATGGGCATTTG
rJMFF010A11- AATAGGGTTTGTCAAGGACCCATGCGTGCTTTCTTGCTATTAGTACAAGATGGGCATTTG
rJMFF005A11- AATAGGGTTTGTCAAGGACCCATGCGTGCTTTCTTGCTATTAGTACAAGATGGGCATTTG
rJMFF005P04- AATAGGGTTTGTCAAGGACCCATGCGTGCTTTCTTGCTATTAGTACAAGATGGGCATTTG
____________________________________________________________
consensus AATAGGGTTTGTCAAGGACCCATGCGTGCTTTCTTGCTATTAGTACAAGATGGGCATTTG
. : . : . : . : . : . :
rJMFF030A20- TACTGCTTAATGTGCTCGGCCCTGGCAGGAGTAATTTTAACGCACTTCCCATGGAACCAT
rJMFF010A11- TACTGCTTAATGTGCTCGGCCCTGGCAGGAGTAATTTTAACGCACTTCCCATGGAACCAT
rJMFF005A11- TACTGCTTAATGTGCTCGGCCCTGGCAGGAGTAATTTTAACGCACTTCCCATGGAACCAT
rJMFF005P04- TACTGCTTAATGTGCTCGGCCCTGGCAGGAGTAATTTTAACGCACTTCCCATGGAACCAT
____________________________________________________________
consensus TACTGCTTAATGTGCTCGGCCCTGGCAGGAGTAATTTTAACGCACTTCCCATGGAACCAT
. : . : . : . : . : . :
rJMFF030A20- GTCTCGCATATATCACAGCAGATCCAGAATTCATTTGATGCATAGCTCTCGCCACATGCC
rJMFF010A11- GTCTCGCATATATCACAGCAGATCCAGAATTCATTTGATGCATAGCTCTCGCCACATGCC
rJMFF005A11- GTCTCGCATATATCACAGCAGATCCAGAATTCATTTGATGCATAGCTCTCGCCACATGCC
rJMFF005P04- GTCTCGCATATATCACAGCAGATCCAGAATTCATTTGATGCATAGCTCTCGCCACATGCC
____________________________________________________________
consensus GTCTCGCATATATCACAGCAGATCCAGAATTCATTTGATGCATAGCTCTCGCCACATGCC
. : . : . : . : . : . :
rJMFF030A20- CCGCATAGCGTCTCTCCCTGCTCATCTTCTTCCTCTTCCAAACCACCACCATCATCGTCC
rJMFF010A11- CCGCATAGCGTCTCTCCCTGCTCATCTTCTTCCTCTTCCAAACCACCACCATCATCGTCC
rJMFF005A11- CCGCATAGCGTCTCTCCCTGCTCATCTTCTTCCTCTTCCAAACCACCACCATCATCGTCC
rJMFF005P04- CCGCATAGCGTCTCTCCCTGCTCATCTTCTTCCTCTTCCAAACCACCACCATCATCGTCC
____________________________________________________________
consensus CCGCATAGCGTCTCTCCCTGCTCATCTTCTTCCTCTTCCAAACCACCACCATCATCGTCC
. : . : . : . : . : . :
rJMFF030A20- TCATGTTTTGG
rJMFF010A11- TCATGTTTTGGTTGTGCTCTCGAATACTTGCNCTTGGAGTTA
rJMFF005A11- TCATGTTTTGGTTGTGCTCTCGAATACTTGCTCTTGGAGTTAGAATTAGACTTGGACTTG
rJMFF005P04- TCATGTTTTGGTTGTGCTCTCGAATACTTGCTCTTGGAGTTAGAATTAGACTTGGACTTG
JMSF052B07+ TGGAGTTAGAATTAGACTTGGACTTG
____________________________________________________________
consensus TCATGTTTTGGTTGTGCTCTCGAATACTTGCTCTTGGAGTTAGAATTAGACTTGGACTTG
. : . : . : . : . : . :
rJMFF005A11- TTGCTGCTGTGGTTTGACACGGCGGATGACTTCTCTTTCGATTGTTTCTTAGCCATCCCA
rJMFF005P04- TTGCTGCTGTGGTTTGACACGGCGGATGACTTCTCTTTCGATTGTTTCTTAGCCATCCCA
JMSF052B07+ TTGCTGCTGTGGTTTGACACGGCGGATGACTTCTCTTTCGATTGTTTCTTAGCCATCCCA
____________________________________________________________
consensus TTGCTGCTGTGGTTTGACACGGCGGATGACTTCTCTTTCGATTGTTTCTTAGCCATCCCA
. : . : . : . : . : . :
rJMFF005A11- GTCACAACCTCAAATATCGTAGGGAGATCATTTATCATATTGAAAAGCCGCTTCCTATCA
rJMFF005P04- GTCACAACCTCAAATATCGTAGGGAGATCATTTATCATATTGAAAAGCCGCTTCCTATCA
JMFF030A20+ ATCGTAGGGAGATCATTTATCATATTGAAAAGCCGCTTCCTATCA
JMSF052B07+ GTCACAACCTCAAATATCGTAGGGAGATCATTTATCATATTGAAAAGCCGCTTCCTATCA
____________________________________________________________
consensus GTCACAACCTCAAATATCGTAGGGAGATCATTTATCATATTGAAAAGCCGCTTCCTATCA
. : . : . : . : . : . :
rJMFF005A11- GCTCGGTCAAATCCAAATCTTGCACCAAAATAAAAAGCAACTGAAAGTAACCATGCATCA
rJMFF005P04- GCTCGGTCAAATCCAAATCTTGCACCAAAATAAAAAGCAACTGAAAGTAACCATGCATCA
JMFF030A20+ GCTCGGTCAAATCCAAATCTTGCACCAAAATAAAAAGCAACTGAAAGTAACCATGCATCA
JMFF005A11+ AAATAAAAAGCAACTGAAAGTAACCATGCATCA
JMSF052B07+ GCTCGGTCAAATCCAAATCTTGCACCAAAATAAAAAGCAACTGAAAGTAACCATGCATCA
____________________________________________________________
consensus GCTCGGTCAAATCCAAATCTTGCACCAAAATAAAAAGCAACTGAAAGTAACCATGCATCA
. : . : . : . : . : . :
rJMFF005A11- CTATGCACAGC
rJMFF005P04- CTATGCACAGCC
JMFF030A20+ CTATGCACAGCCACCAAAGAAATCCAGTCCTTTTCCTGCATGCCATCCCGGGCAAAGTTA
JMFF005P04+ TTCCTGCATGCCATCCCGGGCAAAGTTA
JMFF005A11+ CTATGCACAGCCACCAAAGAAATCCAGTCCTTTTCCTGCATGCCATCCCGGGCAAAGTTA
JMSF052B07+ CTATGCACAGCCACCAAAGAAATCCAGTCCTTTTCCTGCATGCCATCCCGGGCAAAGTTA
____________________________________________________________
consensus CTATGCACAGCCACCAAAGAAATCCAGTCCTTTTCCTGCATGCCATCCCGGGCAAAGTTA
. : . : . : . : . : . :
JMFF030A20+ ATACCCAGAGCAGGTTCAGGAAGCTCTGGAGGCACTTCATCAGCTGGTAAAGCAACTTCC
JMFF005P04+ ATACCCAGAGCAGGTTCAGGAAGCTCTGGAGGCACTTCATCAGCTGGTAAAGCAACTTCC
JMFF005A11+ ATACCCAGAGCAGGTTCAGGAAGCTCTGGAGGCACTTCATCAGCTGGTAAAGCAACTTCC
JMSF052B07+ ATACCCAGAGCAGGTTCAGGAAGCTCTGGAGGCACTTCATCAGCTGGTAAAGCAACTTCC
____________________________________________________________
consensus ATACCCAGAGCAGGTTCAGGAAGCTCTGGAGGCACTTCATCAGCTGGTAAAGCAACTTCC
. : . : . : . : . : . :
JMFF030A20+ CATTGCTCACTGGGAAATCCATAAAGGCAAAGGTTTTCCTTCTCTGGGTCACACATCTGA
JMFF005P04+ CATTGCTCACTGGGAAATCCATAAAGGCAAAGGTTTTCCTTCTCTGGGTCACACATCTGA
JMFF005A11+ CATTGCTCACTGGGAAATCCATAAAGGCAAAGGTTTTCCTTCTCTGGGTCACACATCTGA
JMSF052B07+ CATTGCTCACTGGGAAATCCATAAAGGCAAAGGTTTTCCTTCTCTGGGTCACACATCTGA
____________________________________________________________
consensus CATTGCTCACTGGGAAATCCATAAAGGCAAAGGTTTTCCTTCTCTGGGTCACACATCTGA
. : . : . : . : . : . :
JMFF030A20+ AAAAAATCTTCAACATCAGTGGTGAGTGCTTTAACTAAGCCGGCCCTTCGGCCCTTGAAA
JMFF005P04+ AAAAAATCTTCAACATCAGTGGTGAGTGCTTTAACTAAGCCGGCCCTTCGGCCCTTGAAA
JMFF005A11+ AAAAAATCTTCAACATCAGTGGTGAGTGCTTTAACTAAGCCGGCCCTTCGGCCCTTGAAA
JMSF052B07+ AAAAAATCTTCAACATCAGTGGTGAGTGCTTTAACTAAGCCGGCCCTTCGGCCCTTGAAA
____________________________________________________________
consensus AAAAAATCTTCAACATCAGTGGTGAGTGCTTTAACTAAGCCGGCCCTTCGGCCCTTGAAA
. : . : . : . : . : . :
JMFF030A20+ TCCCTGAAAACCTCCTCCACCGTTCTTGGGTTGTACTGTTGACCGCCGTCCATCCCTGTC
JMFF005P04+ TCCCTGAAAACCTCCTCCACCGTTCTTGGGTTGTACTGTTGACCGCCGTCCATCCCTGTC
JMFF005A11+ TCCCTGAAAACCTCCTCCACCGTTCTTGGGTTGTACTGTTGACCGCCGTCCATCCCTGTC
JMSF052B07+ TCCCTGAAAACCTCCTCCACCGTTCTTGGGTTGTACCGTTGACCGCCGTCCATCCCTGTC
____________________________________________________________
consensus TCCCTGAAAACCTCCTCCACCGTTCTTGGGTTGTACTGTTGACCGCCGTCCATCCCTGTC
. : . : . : . : . : . :
JMFF030A20+ CTCTGCCGCCGCCGTCGATGCAGTTTCAGCAGCCAGCTCTCCCTGCGTATACAGAATAGG
JMFF005P04+ CTCTGCCGCCGCCGTCGATGCAGTTTCAGCAGCCAGCTCTCCCTGCGTATACAGAATAGG
JMFF005A11+ CTCTGCCGCCGCCGTCGATGCAGTTTCAGCAGCCAGCTCTCCCTGCGTATACAGAATAGG
JMSF052B07+ CTCTGCCGCCGCCGTCGATGCAGTTTCAGCAGCCAGCTCTCCCTGCGTATACAGAATAGA
____________________________________________________________
consensus CTCTGCCGCCGCCGTCGATGCAGTTTCAGCAGCCAGCTCTCCCTGCGTATACAGAATAGG
. : . : . : . : . : . :
JMFF030A20+ AGAGAGAAAGAGGAGTGGGCGTAGAGTAGAGAGCAGGAAAAAAGAGT
JMFF005P04+ AGAGAGAAAGAGGAGTGGGCGTAGAGTAGAGAGCAGGAAAAAAGAGTGGTTTTTGGCAAT
JMFF005A11+ AGAGAGAAAGAGGAGTGGGCGTAGAGTAGAGAGCAGGAAAAAAGAGTGGTTTTTGGCAAT
JMSF052B07+ AGAGAGAAAGAGGAGTGGGCGTAGAGTAGAGAGCAGGAAAAAAGAGTGGTTTTTGGCAAT
____________________________________________________________
consensus AGAGAGAAAGAGGAGTGGGCGTAGAGTAGAGAGCAGGAAAAAAGAGTGGTTTTTGGCAAT
. : . : . : . : . : . :
JMFF005P04+ TTTGGGAGGGAAAGAGAAAACGAAAAAATGTTTGGAAACGGAAAGAGAAGACGCAGGGC
JMFF005A11+ TTTGGGAGGGAAAGAGAAAACGAAAAAATGTTTGGAAACGGAAAGAGAAGACGCAGGGC
JMSF052B07+ TTTGGGAGGGAAAGAGAAAACGAAAAAATGTTTGGAAACGGAAAGAGAAGACGCAGGGCC
____________________________________________________________
consensus TTTGGGAGGGAAAGAGAAAACGAAAAAATGTTTGGAAACGGAAAGAGAAGACGCAGGGCC