| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF034J13 | Sequence | 132 | 013583 (4) | 550 | 013620 (2) | ref|XP_004232395.1| | 128 | PREDICTED: uncharacterized protein LOC101255155 [Solanum lycopersicum] | |||
| JMSF034K13 | Sequence | 626 | 013583 (4) | ref|XP_009767221.1| | 2e-50 | PREDICTED: E3 ubiquitin-protein ligase KEG [Nicotiana sylvestris] | 154 | 022592 | |||
| JMSF046N14 | Sequence | 776 | 013583 (4) | ref|XP_009767221.1| | 9e-81 | PREDICTED: E3 ubiquitin-protein ligase KEG [Nicotiana sylvestris] | 773 | 002924 (3) | ref|XP_009767221.1| | 2e-91 | PREDICTED: E3 ubiquitin-protein ligase KEG [Nicotiana sylvestris] |
| JMSF052A10 | Sequence | 627 | 013583 (4) | ref|XP_009767221.1| | 2e-51 | PREDICTED: E3 ubiquitin-protein ligase KEG [Nicotiana sylvestris] | 244 | 002924 (3) | ref|XP_009767221.1| | 2e-09 | PREDICTED: E3 ubiquitin-protein ligase KEG [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF046N14+ CCCCAAACACCGCCTCGTCATTTTCATTCAAAAGGAAGTTACAAGGTTTGAGGTTTAG
____________________________________________________________
consensus CCCCAAACACCGCCTCGTCATTTTCATTCAAAAGGAAGTTACAAGGTTTGAGGTTTAG
. : . : . : . : . : . :
JMSF046N14+ GACTAAGATTCCTTTCGAATGAAGCTCCATTATTCCTTGTGCTAAGTCAGTCCCATACCT
____________________________________________________________
consensus GACTAAGATTCCTTTCGAATGAAGCTCCATTATTCCTTGTGCTAAGTCAGTCCCATACCT
. : . : . : . : . : . :
JMSF046N14+ TAAAACATCCTTCAAGGACAGCTTTCCGCCTTTCATGTGAGTCATTTTGTCACCAGCTGA
JMSF034K13+ ATGTGAGTCATTTTGTCACCAGCTGA
JMSF052A10+ ATGTGAGTCATTTTGTCACCAGCTGA
____________________________________________________________
consensus TAAAACATCCTTCAAGGACAGCTTTCCGCCTTTCATGTGAGTCATTTTGTCACCAGCTGA
. : . : . : . : . : . :
JMSF046N14+ GCCTTCATAGAACTTCATAACGATGCATAACCTCCCACTTAAGACTGATACACCTTGGAT
JMSF034K13+ GCCTTCATAGAACTTCATAACGATGCATAACCTCCCACTTAAGACTGATACACCTNGGAT
JMSF052A10+ GCCTTCATAGAACTTCATAACGATGCATAACCTCCCACTTAAGACTGATACACCTTGGAT
____________________________________________________________
consensus GCCTTCATAGAACTTCATAACGATGCATAACCTCCCACTTAAGACTGATACACCTTGGAT
. : . : . : . : . : . :
JMSF046N14+ ATGGCAAACATTTCTCAACCCCTGACACTGAGAAAACAAATTTCCCAACCGATTCATTAC
JMSF034K13+ ATGGCAAACATTTCTCAACCCCTGACACTGAGAAAACAAATTTCCCAACCGATTCATTAC
JMSF052A10+ ATGGCAAACATTTCTCAACCCCTGACACTGAGAAAACAAATTTCCCAACCGATTCATTAC
____________________________________________________________
consensus ATGGCAAACATTTCTCAACCCCTGACACTGAGAAAACAAATTTCCCAACCGATTCATTAC
. : . : . : . : . : . :
JMSF046N14+ AACATTAACATTGTCCTTGTTTATGGGATGCAAAATCTTAACAGCTACTTCATAATCCTC
JMSF034K13+ AACATTAACATTGTCCTTGTTTATGGGATGCAAAATCTTAACAGCTACTTCATAATCCTC
JMSF052A10+ AACATTAACATTGTCCTTGTTTATGGGATGCAAAATCTTAACAGCTACTTCATAATCCTC
____________________________________________________________
consensus AACATTAACATTGTCCTTGTTTATGGGATGCAAAATCTTAACAGCTACTTCATAATCCTC
. : . : . : . : . : . :
JMSF046N14+ AGCACTTTGGTTACGAGTCCCTAACCAAACATCACCAAATACGCCCCTTCCAATTCTATG
JMSF034K13+ AGCACTTTGGTTACGAGTCCCTAACCAAACATCACCAAATACGCCCCTTCCAATTCTATG
JMSF052A10+ AGCACTTTGGTTACGAGTCCCTAACCAAACATCACCAAATACGCCCCTTCCAATTCTATG
____________________________________________________________
consensus AGCACTTTGGTTACGAGTCCCTAACCAAACATCACCAAATACGCCCCTTCCAATTCTATG
. : . : . : . : . : . :
JMSF046N14+ CCAAAGTTTGATACTGATCGGGTCAATCCACGGGCTAATCTGGCTAGATGTTGCTACAAC
JMSF034K13+ CCAAAGTTTGATACTGATCGGGTCAATCCACGGGCTAATCTGGCTAGATGTTGCTACAAC
JMSF052A10+ CCAAAGTTTGATACTGATCGGGTCAATCCACGGGCTAATCTGGCTAGATGTTGCTACAAC
____________________________________________________________
consensus CCAAAGTTTGATACTGATCGGGTCAATCCACGGGCTAATCTGGCTAGATGTTGCTACAAC
. : . : . : . : . : . :
JMSF046N14+ ACTTGCAAGGATATCAGGTTCAACAATCTCAAAGCCGAGGAAAGAGTTTGATTGTTTTTC
JMSF034K13+ ACTTGCAAGGATATCAGGTTCAACAATCTCAAAGCCGAGGAAAGAGTTTGATTGTTTTTC
JMSF052A10+ ACTTGCAAGGATATCAGGTTCAACAATCTCAAAGCCGAGGAAAGAGTTTGATTGTTTTTC
____________________________________________________________
consensus ACTTGCAAGGATATCAGGTTCAACAATCTCAAAGCCGAGGAAAGAGTTTGATTGTTTTTC
. : . : . : . : . : . :
JMSF046N14+ AACAACCTTCCCAGCCATTCTTGTAGCGGAGTGGGGAGGGTACTGGAAAATTCAGAAAAT
JMSF034K13+ AACAACCTTCCCAGCCATTCTTGTAGCGGAGTGGGGAGGGTACTGGAAAATTCAGAAAAT
JMSF052A10+ AACAACCTTCCCAGCCATTCTTGTAGCGGAGTGGGGAGGGTACTGGAAAATTCAGAAAAT
____________________________________________________________
consensus AACAACCTTCCCAGCCATTCTTGTAGCGGAGTGGGGAGGGTACTGGAAAATTCAGAAAAT
. : . : . : . : . : . :
JMSF046N14+ GAAATAAAATAATAAAATTTCGACGAATTTGAAGTGAATTGGTTGCTAACGAACAGTGTG
JMSF034K13+ GAAATAAAATAATAAAATTTCGACGAATTTGAAGTGAATTGGTTGCTAACGAACAGTGTG
JMSF034J13+ ACGAACAGTGTG
JMSF052A10+ GAAATAAAATAATAAAATTTCGACGAATTTGAAGTGAATTGGTTGCTAACGAACAGTGTG
____________________________________________________________
consensus GAAATAAAATAATAAAATTTCGACGAATTTGAAGTGAATTGGTTGCTAACGAACAGTGTG
. : . : . : . : . : . :
JMSF046N14+ ACTAAAGGCTCATCATCTCTGTATATGAACCTGTAAAAGAAAAGAAACGAAATAATATTA
JMSF034K13+ ACTAAAGGCTCATCATCTCTGTATATGAACCTGTAAAAGAAAAGAAACGAAATAATATTA
JMSF034J13+ ACTNAAGGCTCATCATCTCCGTATATGAACCTGTAAAAGAAAAGAAACGAAATAATATTA
JMSF052A10+ ACTAAAGGCTCATCATCTCTGTATATGAACCTGTAAAAGAAAAGAAACGAAATAATATTA
____________________________________________________________
consensus ACTAAAGGCTCATCATCTCTGTATATGAACCTGTAAAAGAAAAGAAACGAAATAATATTA
. : . : . : . : . : . :
JMSF046N14+ AAATAAAGAGAAACATTTTCAAGAAAAAGGTAACTGGAGAGAGAACAGGAGAAACACC
JMSF034K13+ AAATAAAGAGAAACATTTTCAAGAAAAAGGTAACTGGAGAGAGAACAGGAGAAACACC
JMSF034J13+ AAATAAAGAGAAACATTTTCAAGAAAAAGGTAACTGGAGAGAGAACAGGAGAAACACC
JMSF052A10+ AAATAAAGAGAAACATTTTCAAGAAAAAGGTAACTGGAGAGAGAACAGGAGAAACACCGC
____________________________________________________________
consensus AAATAAAGAGAAACATTTTCAAGAAAAAGGTAACTGGAGAGAGAACAGGAGAAACACCGC