Contig 013573:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038M24Sequence512013573 (3)ref|XP_002277472.1|131PREDICTED: F-box/kelch-repeat protein At1g30090 [Vitis vinifera] emb|CAN75078.1|771013781 (3)ref|XP_009609743.1|169PREDICTED: F-box/kelch-repeat protein At1g30090 [Nicotiana tomentosiformis]
JMSF013D06Sequence461013573 (3)gb|KJB34963.1|1e-64hypothetical protein B456_006G092600 [Gossypium raimondii]784013781 (3)ref|XP_009609743.1|181PREDICTED: F-box/kelch-repeat protein At1g30090 [Nicotiana tomentosiformis]
JMSF051A02Sequence668013573 (3)ref|XP_002277472.1|190PREDICTED: F-box/kelch-repeat protein At1g30090 [Vitis vinifera] emb|CAN75078.1|729013781 (3)ref|XP_009609743.1|244PREDICTED: F-box/kelch-repeat protein At1g30090 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF051A02+                                                             CCGTGCAAGG
                      ____________________________________________________________
consensus                                                               CCGTGCAAGG
 
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JMSF013D06+                             CCAAGACAAGTTAACGAGATCGAACACCTTCCACTCTATCTT
JMSF051A02+           CATCGCCGGGATCCCGTGCCAAGACAAGTTAACGAGATCGAACACCTTCCACTCTATCTT
                      ____________________________________________________________
consensus             CATCGCCGGGATCCCGTGCCAAGACAAGTTAACGAGATCGAACACCTTCCACTCTATCTT
 
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JMSF013D06+           CCTAGTACATTTGTCAAACGCAAACACAAACACCCACGGATCGTGAAACGAGAGCTCCTT
JMSF051A02+           CCTAGTACATT--TCAAACGCAAACACAAACACCCACGGATCGTGAAACGAGAGCTCCTT
                      ____________________________________________________________
consensus             CCTAGTACATTTGTCAAACGCAAACACAAACACCCACGGATCGTGAAACGAGAGCTCCTT
 
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JMFF038M24+                                 TTATTCCCGAAAAGCAAGTACCAGCGCTTACACACCGC
JMSF013D06+           CCTCCGAGAAAAGAACCTCTCTTTATTCCCGAAAAGCAAGTACCAGCGCTTACACACCGC
JMSF051A02+           CCTCCGAGAAAAGAACCTCTCTTTATTCCCGAAAAGCAAGTACCAGCGCTTACACACCGC
                      ____________________________________________________________
consensus             CCTCCGAGAAAAGAACCTCTCTTTATTCCCGAAAAGCAAGTACCAGCGCTTACACACCGC
 
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JMFF038M24+           CCTGCACGCTTCGTGGCTCTCAACCGGGGCTCGGAGCAGGCAATTGAGCGCAACATCGTC
JMSF013D06+           CCTGCACGCTTCGTGGCTCTCAACCGGGGCTCGGAGCAGGCAATTGAGCGCAACATCGTC
JMSF051A02+           CCTGCACGCTTCGTGGCTCTCAACCGGGGCTCGGAGCAGGCAATTGAGCGCAACATCGTC
                      ____________________________________________________________
consensus             CCTGCACGCTTCGTGGCTCTCAACCGGGGCTCGGAGCAGGCAATTGAGCGCAACATCGTC
 
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JMFF038M24+           GGGAAGCCCCGGGATTAGAGGCTCCCCGATCAGAGCCAATTCAGTGTCTAGTGAAGGATC
JMSF013D06+           GGGAAGCCCCGGGATTAGAGGCTCCCCGATCAGAGCCAATTCAGTGTCTAGTGAAGGATC
JMSF051A02+           GGGAAGCCCCGGGATTAGAGGCTCCCCGATCAGAGCCAATTCAGTGTCTAGTGAAGGATC
                      ____________________________________________________________
consensus             GGGAAGCCCCGGGATTAGAGGCTCCCCGATCAGAGCCAATTCAGTGTCTAGTGAAGGATC
 
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JMFF038M24+           TNGCAGAGAGGAATCCANTGAAGCTATCCTAAACTTTGGGGTCAATGTCATCTCAGAATC
JMSF013D06+           TTGCAGAGAGGAATCCATTGAAGCTATCCTAAACTTTGGGGTCAATGTCATCTCAGAATC
JMSF051A02+           TTGCAGAGAGGAATCCATTGAAGCTATCCTAAACTTTGGGGTCAATGTCATCTCAGAATC
                      ____________________________________________________________
consensus             TTGCAGAGAGGAATCCATTGAAGCTATCCTAAACTTTGGGGTCAATGTCATCTCAGAATC
 
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JMFF038M24+           CCCTAGCTTATGAACAGGAAATTGCTGGGNTGATATCCTTACCCTCTGCATCATTAACAG
JMSF013D06+           CCCTAGCTTATGAACAGGAAATTGCTGGGCTGATATCCTTACCCTCTGCATCATTAACAG
JMSF051A02+           CCCTAGCTTATGAACAGGAAATTGCTGGGCTGATATCCTTACCCTCTGCATCATTAACAG
                      ____________________________________________________________
consensus             CCCTAGCTTATGAACAGGAAATTGCTGGGCTGATATCCTTACCCTCTGCATCATTAACAG
 
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JMFF038M24+           ATTAAATAATGGAGGCANTCGAAGAAGATGAAGAAGACTGTTGTGGTTGTATTCATATGG
JMSF013D06+           ATTAAATAATGGAGGCAGTCGAAGAAGATGAAGAAGACTGTTGTGGTTGTATTCATAT  
JMSF051A02+           ATTAAATAATGGAGGCAGTCGAAGAAGATGAAGAAGACTGTTGTGGTTGTATTCATATGG
                      ____________________________________________________________
consensus             ATTAAATAATGGAGGCAGTCGAAGAAGATGAAGAAGACTGTTGTGGTTGTATTCATATGG
 
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JMFF038M24+           GGTGTGATGATGAAAAAGAAAGGATTTTTATTGTTTTCTTTTTTTCTCTTTACATGATTT
JMSF051A02+           GGTGTGATGATGAAAAAGAAAGGATTTTTATTGTTTTCTTTTTTTCTCTTTACATGATTT
                      ____________________________________________________________
consensus             GGTGTGATGATGAAAAAGAAAGGATTTTTATTGTTTTCTTTTTTTCTCTTTACATGATTT
 
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JMFF038M24+           CAGCTTCAACCGATTTCAGCCTCAGAAGTGTATGTGGCAAACATGGTTCATGTTTCAAGG
JMSF051A02+           CAGCTTCAACCGATTTCAGCCTCAGAAGTGTATGTGGCAAACATGGTTCATGTTTCAAGG
                      ____________________________________________________________
consensus             CAGCTTCAACCGATTTCAGCCTCAGAAGTGTATGTGGCAAACATGGTTCATGTTTCAAGG
 
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JMFF038M24+           GAAAAAATATGACCACTTCTCTCTCTCTCTCTATTTCTCTCTCTCTCTCTCTCT      
JMSF051A02+           GAAAAAATATGACCACTTCTCTCTCTCTCTCTATTTCTCTCTCTCTCTCTCTCTATACCC
                      ____________________________________________________________
consensus             GAAAAAATATGACCACTTCTCTCTCTCTCTCTATTTCTCTCTCTCTCTCTCTCTATACCC