Contig 013564:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022C03Sequence680013564 (2)ref|XP_007030697.1|1e-64Homeodomain-like superfamily protein isoform 2 [Theobroma cacao] ref|XP_00703069730020380ref|XP_009619712.1|2e-64PREDICTED: uncharacterized protein LOC104111672 isoform X1 [Nicotiana tomentosi
JMSF050A01Sequence675013564 (2)ref|XP_010312323.1|3e-78PREDICTED: uncharacterized protein LOC101256236 isoform X3 [Solanum lycopersicu723016216ref|XP_009619713.1|5e-59PREDICTED: uncharacterized protein LOC104111672 isoform X2 [Nicotiana tomentosi

Alignment

This contig is upended


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JMSF022C03+                                                                   CTTC
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consensus                                                                     CTTC
 
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JMSF022C03+           GCTTATGGGTAGGTTTCTAGGTACAAGATAACACATGGTCAGATCAACATCAGTTGAAAT
                      ____________________________________________________________
consensus             GCTTATGGGTAGGTTTCTAGGTACAAGATAACACATGGTCAGATCAACATCAGTTGAAAT
 
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JMSF022C03+           GAGAAATGAATTGGATAACAAAATAAGCTCTCATTTATTTAACATGCTTACGTATTTGCT
                      ____________________________________________________________
consensus             GAGAAATGAATTGGATAACAAAATAAGCTCTCATTTATTTAACATGCTTACGTATTTGCT
 
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JMSF022C03+           AGGGGTCCGATGTTTGCACTGTTTATATGATTACCATTTGCCTCAGGTATCTTGTCTGAT
                      ____________________________________________________________
consensus             AGGGGTCCGATGTTTGCACTGTTTATATGATTACCATTTGCCTCAGGTATCTTGTCTGAT
 
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JMSF022C03+           CCGGTTGCTGCATCCATTCCTGAACTCATTGCTTTATTGGAACTGCTATTTGCATGTCCA
                      ____________________________________________________________
consensus             CCGGTTGCTGCATCCATTCCTGAACTCATTGCTTTATTGGAACTGCTATTTGCATGTCCA
 
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JMSF022C03+           TGGAGATTCTTACTAAGTCTGTATTTCTGAAGGTGACTCTTTAAGTGGTATAAGGTTAAT
JMSF050A01+              AGATTCTTACTGAGTCTGTATTTCTGAAGATGACTCTTTAAGTGGTATAAGGTTAAC
                      ____________________________________________________________
consensus             TGGAGATTCTTACTGAGTCTGTATTTCTGAAGGTGACTCTTTAAGTGGTATAAGGTTAAT
 
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JMSF022C03+           CCTTGAATTCCCATTTGCTTCAAAACTGACTTTGGAGTAGCTTTGTCTGCTCCACCAAGC
JMSF050A01+           CCCTGAATTCCCATTAGCTTCAAAACTGACTTTGGAGTGGCTTTGTCAGCTCCACCAAGT
                      ____________________________________________________________
consensus             CCTTGAATTCCCATTTGCTTCAAAACTGACTTTGGAGTGGCTTTGTCTGCTCCACCAAGT
 
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JMSF022C03+           TGGTTAACTGCTTCTACAAACCGCTCATGGAGGTCTTGTGTCCACTTCAATCTTGGCTTG
JMSF050A01+           TGATTTACTGCTTCTATAAACCGCTCATGGAGGTCTGCAGTCCACTTCAATCTTGGCTTG
                      ____________________________________________________________
consensus             TGGTTTACTGCTTCTATAAACCGCTCATGGAGGTCTTGTGTCCACTTCAATCTTGGCTTG
 
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JMSF022C03+           GCATCAGTTGAAAGGACTAGTCCTGAAT---CACCATGGCCATTCTCACCTTGCATGAAC
JMSF050A01+           GCATCTGTTGAAAGAACGAGTCCTGAATCTCCTCCATGGACGTTCCCATCTTGCAGGAAC
                      ____________________________________________________________
consensus             GCATCTGTTGAAAGGACTAGTCCTGAATCTCCTCCATGGCCGTTCTCATCTTGCATGAAC
 
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JMSF022C03+           AAATGCCTTTCAGGTGGCATCAACATATTTGTGGAAGGGTGCATGCTCTTTCCTTGACGG
JMSF050A01+           AAATGCCTTTCAGGAGGAACCGACATCCTTGTGGAAGGGTGCATACTCCTTCCTTGATGG
                      ____________________________________________________________
consensus             AAATGCCTTTCAGGTGGCATCGACATCTTTGTGGAAGGGTGCATGCTCTTTCCTTGATGG
 
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JMSF022C03+           TGGTGATGATACAT                                              
JMSF050A01+           TGGTGATGGTACATAATTGGCCTGAAGGAGGTATTTATTTGCTTGTGCAGTCTGTTCCCA
                      ____________________________________________________________
consensus             TGGTGATGGTACATAATTGGCCTGAAGGAGGTATTTATTTGCTTGTGCAGTCTGTTCCCA
 
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JMSF050A01+           CCCTTGAATTGTGAATAACGTGTCTTCTATACTCTGCAAAGTATATTGTCTCTGACGCTT
                      ____________________________________________________________
consensus             CCCTTGAATTGTGAATAACGTGTCTTCTATACTCTGCAAAGTATATTGTCTCTGACGCTT
 
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JMSF050A01+           GATTAAAGAAAGCTTCTTCTACAGCTCTTATTTATCTCCAATTTCCTTGACAATTTTTCC
                      ____________________________________________________________
consensus             GATTAAAGAAAGCTTCTTCTACAGCTCTTATTTATCTCCAATTTCCTTGACAATTTTTCC