Contig 013561:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001G16Sequence608013561 (5)ref|XP_008453712.1|3e-38PREDICTED: transmembrane and coiled-coil domain-containing protein 4 [Cucumis m769009802 (6)ref|XP_009615489.1|3e-94PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isofo
JMFF001K22Sequence584013561 (5)ref|XP_008453712.1|2e-33PREDICTED: transmembrane and coiled-coil domain-containing protein 4 [Cucumis m545009802 (6)ref|XP_009757147.1|2e-42PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isofo
JMFF045F11Sequence646013561 (5)ref|XP_008453712.1|5e-40PREDICTED: transmembrane and coiled-coil domain-containing protein 4 [Cucumis m628009802 (6)ref|XP_009615489.1|1e-46PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isofo
JMSF046A02Sequence682013561 (5)ref|XP_006343378.1|1e-42PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isofo832009802 (6)ref|XP_009615490.1|3e-93PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isofo
JMSF049O20Sequence679013561 (5)ref|XP_010317300.1|155PREDICTED: uncharacterized protein LOC104646015 [Solanum lycopersicum]784009802 (6)ref|XP_009615490.1|1e-96PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isofo

Alignment

This contig is upended


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JMSF046A02+                                 TCCGGTTGATTTTCAACATGAGTAGCTTCCCCTTCAGG
JMSF049O20+                                                    GAGTAGCTTCCCCTTCAGG
                      ____________________________________________________________
consensus                                   TCCGGTTGATTTTCAACATGAGTAGCTTCCCCTTCAGG
 
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JMSF046A02+           ATTTGACTCTGAGTCAGCAGTTGAGAATTTCTCTCTGCATTCATTCTCATATTCACGCAG
JMFF045F11+                        TCAGCAGTTGAGAATTTCTCTCTGCATTCATTCTCATATTCACGCAG
JMFF001G16+                                              TGCATTCATTCTCATATTCACGCAG
JMSF049O20+           ATTTGACTCTGAGTCAGCAGTTGAGAATTTCTCTCTGCATTCATTCTCATATTCACGCAG
                      ____________________________________________________________
consensus             ATTTGACTCTGAGTCAGCAGTTGAGAATTTCTCTCTGCATTCATTCTCATATTCACGCAG
 
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JMSF046A02+           CTTCTCCTTCTCAGATTCAAGATCAACAGTTTTCTCTATGCTTGATGCCATAGAATCTAT
JMFF045F11+           CTTCTCCTTCTCAGATTCAAGATCAACAGTTTTCTCTATGCTGNATGCCATAGAATCTAT
JMFF001G16+           CTTCTCCTTCTCAGATTCAAGATCAACAGTTTTCTCTATGCTTGATGCCATAGAATCTAT
JMFF001K22+                          TTCAAGATCAACAGTTTTCTCTATGCTTGATGCCATAGAATCTAT
JMSF049O20+           CTTCTCCTTCTCAGATTCAAGATCAACAGTTTTCTCTATGCTTGATGCCATAGAATCTAT
                      ____________________________________________________________
consensus             CTTCTCCTTCTCAGATTCAAGATCAACAGTTTTCTCTATGCTTGATGCCATAGAATCTAT
 
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JMSF046A02+           ACTGTTTGCCAAAGTAATTTCCCTTTCCAGTACTTCAGAAGAAGCATCCCCACTTCCCTC
JMFF045F11+           ACTGTTTGCCAAAGTAATTTCCCTTTCCAGTACTTCAGAAGAAGCATCCCCACTTCCCTC
JMFF001G16+           ACTGTTTGCCAAAGTAATTTCCCTTTCCAGTACTTCAGAAGAAGCATCCCCACTTCCCTC
JMFF001K22+           ACTGTTTGCCAAAGTAATTTCCCTTTCCAGTACTTCAGAAGAAGCATCCCCACTTCCCTC
JMSF049O20+           ACTGTTTGCCAAAGTAATTTCCCTTTCCAGTACTTCAGAAGAAGCATCCCCACTTCCCTC
                      ____________________________________________________________
consensus             ACTGTTTGCCAAAGTAATTTCCCTTTCCAGTACTTCAGAAGAAGCATCCCCACTTCCCTC
 
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JMSF046A02+           AGAGAGTAACCTGAGAAACGCTCCCACATGACGATTGGCCGGTCCATTACCGGCAGTTTC
JMFF045F11+           AGAGAGTAACCTGAGAAACGCTCCCACATGACGATTGGCCGGTCCATTACCGGCAGTTTC
JMFF001G16+           AGAGAGTAACCTGAGAAACGCTCCCACATGACGATTGGCCGGTCCATTACCGGCAGTTTC
JMFF001K22+           AGAGAGTAACCTGAGAAACGCTCCCACATGACGATTGGCCGGTCCATTACCGGCAGTTTC
JMSF049O20+           AGAGAGTAACCTGAGAAACGCTCCCACATGACGATTGGCCGGTCCATTACCGGCAGTTTC
                      ____________________________________________________________
consensus             AGAGAGTAACCTGAGAAACGCTCCCACATGACGATTGGCCGGTCCATTACCGGCAGTTTC
 
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JMSF046A02+           CTCAAGTCCAGTCCATGCTATAGGATCGATCTCTAGAAACTTGAAGACAGGACGGAGGAG
JMFF045F11+           CTCAAGTCCAGTCCATGCTATAGGATCGATCTCTAGAAACTTGAAGACAGGACGGAGGAG
JMFF001G16+           CTCAAGTCCAGTCCATGCTATAGGATCGATCTCTAGAAACTTGAAGACAGGACGGAGGAG
JMFF001K22+           CTCAAGTCCAGTCCATGCTATAGGATCGATCTCTAGAAACTTGAAGACAGGACGGAGGAG
JMSF049O20+           CTCAAGTCCAGTCCATGCTATAGGATCGATCTCTAGAAACTTGAAGACAGGACGGAGGAG
                      ____________________________________________________________
consensus             CTCAAGTCCAGTCCATGCTATAGGATCGATCTCTAGAAACTTGAAGACAGGACGGAGGAG
 
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JMSF046A02+           AGAGGATGACTGGTGCACCCAAAGCTGTGGGTCTTCGGAGACGGAATCGCTGCTGCTGCT
JMFF045F11+           AGAGGATGACTGGTGCACCCAAAGCTGTGGGTCTTCGGAGACGGAATCGCTGCTGCTGCT
JMFF001G16+           AGAGGATGACTGGTGCACCCAAAGCTGTGGGTCTTCGGAGACGGAATCGCTGCTGCTGCT
JMFF001K22+           AGAGGATGACTGGTGCACCCAAAGCTGTGGGTCTTCGGAGACGGAATCGCTGCTGCTGCT
JMSF049O20+           AGAGGATGACTGGTGCACCCAAAGCTGTGGGTCTTCGGAGACGGAATCGCTGCTGCTGCT
                      ____________________________________________________________
consensus             AGAGGATGACTGGTGCACCCAAAGCTGTGGGTCTTCGGAGACGGAATCGCTGCTGCTGCT
 
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JMSF046A02+           GCTACCACTGCTGATGCGATCCTGGGTTAGGTCTTCGTTGCCATCGGAGGGAACCCCCAA
JMFF045F11+           GCTACCACTGCTGATGCGATCCTGGGTTAGGTCTTCGTTGCCATCGGAGGGAACCCCCAA
JMFF001G16+           GCTACCACTGCTGATGCGATCCTGGGTTAGGTCTTCGTTGCCATCGGAGGGAACCCCCAA
JMFF001K22+           GCTACCACTGCTGATGCGATCCTGGGTTAGGTCTTCGTTGCCATCGGAGGGAACCCCCAA
JMSF049O20+           GCTACCACTGCTGATGCGATCCTGGGTTAGGTCTTCGTTGCCATCGGAGGGAACCCCCAA
                      ____________________________________________________________
consensus             GCTACCACTGCTGATGCGATCCTGGGTTAGGTCTTCGTTGCCATCGGAGGGAACCCCCAA
 
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JMSF046A02+           AGGACGGGTCTGGTGGATCTGGGCCTGGTAAAGGGCCAACCCGAGAAGGGCGGCGGCGGC
JMFF045F11+           AGGACGGGTCTGGTGGATCTGGGCCTGGTAAAGGGCCAACCCGAGAAGGGCGGCGGCGGC
JMFF001G16+           AGGACGGGTCTGGTGGATCTGGGCCTGGTAAAGGGCCAACCCGAGAAGGGCGGCGGCGGC
JMFF001K22+           AGGACGGGTCTGGTGGATCTGGGCCTGGTAAAGGGCCAACCCGAGAAGGGCGGCGGCGGC
JMSF049O20+           AGGACGGGTCTGGTGGATCTGGGCCTGGTAAAGGGCCAACCCGAGAAGGGCGGCGGCGGC
                      ____________________________________________________________
consensus             AGGACGGGTCTGGTGGATCTGGGCCTGGTAAAGGGCCAACCCGAGAAGGGCGGCGGCGGC
 
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JMSF046A02+           GTACCTCTGAGTCGGCGCGAGTATCGATGAAGGCGACGACGACATTGAATTTCATTCAAC
JMFF045F11+           GTACCTCTGAGTCGGCGCGAGTATCGATGAAGGCGACGACGACATTGAATTTCATTCAAC
JMFF001G16+           GTACCTCTGAGTCGGCGCGAGTATCGATGAAGG---CGACGACATTGAATTTCATTCAAC
JMFF001K22+           GTACCTCTGAGTCGGCGCGAGTATCGATGAAGGCGACGACGACATTGAATTTCATTCAAC
JMSF049O20+           GTACCTCTGAGTCGGCGCGAGTATCGATGAAGGCGACGACGACATTGAATTTCATTCAAC
                      ____________________________________________________________
consensus             GTACCTCTGAGTCGGCGCGAGTATCGATGAAGGCGACGACGACATTGAATTTCATTCAAC
 
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JMSF046A02+           GGAAAGCAATCGCTAAAATCAGAGTGTCCAATTCCGAATCAATCAAACGAATTTCTGTTG
JMFF045F11+           GGAAAGCAATCGCTAAAATCAGAGTGTCCAATTCCGAATCAATCAAACGAATTTCTGTTG
JMFF001G16+           GGAAAGCAATCGCTAAAATCAGAGTGTCCAATTCCGAATCAATCAAACGAATTTCTGTTG
JMFF001K22+           GGAAAGCAATCGCTAAAATCAGAGTGTCCAATTCCGAATCAATCAAACGAATTTCTGTTG
JMSF049O20+           GGAAAGCAATCGCTAAAATCAGAGTGTCCAATTCCGAATCAATCAAACGAATTTCTGTTG
                      ____________________________________________________________
consensus             GGAAAGCAATCGCTAAAATCAGAGTGTCCAATTCCGAATCAATCAAACGAATTTCTGTTG
 
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JMSF046A02+           TTTTCTTTGTAGCTACACTGCTCTCAGCTCATTCAAAACTCTC                 
JMFF045F11+           TTTTCTTTGTAGCTACACTGCTCTCAGCTCATTCAAAACTCTCGTTAAATCTTCTTCT  
JMFF001G16+           TTTTCTTTGTAGCTACACTGCTCTCAGCTCATTCAAAACTCTCGTT              
JMFF001K22+           TTTTCTTTGTAGCTACACTGCTCTCAGCTCATTCAAAACTCTCGTTAAATCTTCTTCT  
JMSF049O20+           TTTTCTTTGTAGCTACACTGCTCTCAGCTCATTCAAAACTCTCGTTAAATCTTCTTCTCC
                      ____________________________________________________________
consensus             TTTTCTTTGTAGCTACACTGCTCTCAGCTCATTCAAAACTCTCGTTAAATCTTCTTCTCC