Contig 013559:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF049J05Sequence669013559 (2)751005832 (2)ref|XP_011088110.1|5e-87PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770
JMSF052O13Sequence699013559 (2)923005832 (2)ref|XP_011088110.1|1e-120PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF052O13+ A
                      ____________________________________________________________
consensus A
 
. : . : . : . : . : . :
JMSF052O13+ CTCAAAGTGTGCGATACCACTGGCATAATGGCATCTGATAACTGAAATTACTGGAAATTT
                      ____________________________________________________________
consensus CTCAAAGTGTGCGATACCACTGGCATAATGGCATCTGATAACTGAAATTACTGGAAATTT
 
. : . : . : . : . : . :
JMSF052O13+ TCACCGGGGTAGAAATATCCATGATTCCATTCAAATAATAATTTCACCCCAATTAGTAAA
JMSF049J05+ ATTAGTAAA
                      ____________________________________________________________
consensus TCACCGGGGTAGAAATATCCATGATTCCATTCAAATAATAATTTCACCCCAATTAGTAAA
 
. : . : . : . : . : . :
JMSF052O13+ CACACACTAAAATTCACAAATAAGACATGGTTAAATGCTAGAGCGTTAGACATCCCTAGA
JMSF049J05+ CACACACTAAAATTCACAAATAAGACATGGTTAAATGCTAGAGCGTTAGACATCCCTAGA
                      ____________________________________________________________
consensus CACACACTAAAATTCACAAATAAGACATGGTTAAATGCTAGAGCGTTAGACATCCCTAGA
 
. : . : . : . : . : . :
JMSF052O13+ CCTAGAAATTAATTCACAGAGAAATGATTGAGAAGTCACAGAAGTTATAATGCTAGAGCG
JMSF049J05+ CCTAGAAATTAATTCACAGAGAAATGATTGAGAAGTCACAGAAGTTATAATGCTAGAGCG
                      ____________________________________________________________
consensus CCTAGAAATTAATTCACAGAGAAATGATTGAGAAGTCACAGAAGTTATAATGCTAGAGCG
 
. : . : . : . : . : . :
JMSF052O13+ TTAGACATCCCTAAACCTAGACAGAATAAGAGGTTGCTAATTGAAAACCCTCATATCAAA
JMSF049J05+ TTAGACATCCCTAAACCTAGACAGAATAAGAGGTTGCTAATTGAAAACCCTCATATCAAA
                      ____________________________________________________________
consensus TTAGACATCCCTAAACCTAGACAGAATAAGAGGTTGCTAATTGAAAACCCTCATATCAAA
 
. : . : . : . : . : . :
JMSF052O13+ ATATCCAACAATCGCATATTCACATGGACATTATACTGCAAAAACTCAAAAAGTAACTAG
JMSF049J05+ ATATCCAACAATCGCATATTCACATGGACATTATACTGCAAAAACTCAAAAAGTAACTAG
                      ____________________________________________________________
consensus ATATCCAACAATCGCATATTCACATGGACATTATACTGCAAAAACTCAAAAAGTAACTAG
 
. : . : . : . : . : . :
JMSF052O13+ TCTATTCTGTTACAGACCTGCAAATGAGCTCTAAAAAACACAGAACAGAATTTGGGGATA
JMSF049J05+ TCTATTCTGTTACAGACCTGCAAATGAGCTCTAAAAAACACAGAACAGAATTTGGGGATA
                      ____________________________________________________________
consensus TCTATTCTGTTACAGACCTGCAAATGAGCTCTAAAAAACACAGAACAGAATTTGGGGATA
 
. : . : . : . : . : . :
JMSF052O13+ AAGGAAAGAAGGAGTTAAAGAGGAAGAAGAATGGAGGTAAAGAAGATAGATTAGGGTTTA
JMSF049J05+ AAGGAAAGAAGGAGTTAAAGAGGAAGAAGAATGGAGGTAAAGAAGATAGATTAGGGTTTA
                      ____________________________________________________________
consensus AAGGAAAGAAGGAGTTAAAGAGGAAGAAGAATGGAGGTAAAGAAGATAGATTAGGGTTTA
 
. : . : . : . : . : . :
JMSF052O13+ TCTCTTTCGAAAGAAATGTCCAGAAGCATAATAATCCTCCAAAAACCAAAAACCTTACAA
JMSF049J05+ TCTCTTTCGAAAGAAATGTCCAGAAGCATAATAATCCTCCAAAAACCAAAAACCTTACAA
                      ____________________________________________________________
consensus TCTCTTTCGAAAGAAATGTCCAGAAGCATAATAATCCTCCAAAAACCAAAAACCTTACAA
 
. : . : . : . : . : . :
JMSF052O13+ TAAATATCAAAAACAAGTCAGAACAAATCAGAAATATCCTAACCAACTCCCCTTTTCACG
JMSF049J05+ TAAATATCAAAAACAAGTCAGAACAAATCAGAAATATCCTAACCAACTCCCCTTTTCACG
                      ____________________________________________________________
consensus TAAATATCAAAAACAAGTCAGAACAAATCAGAAATATCCTAACCAACTCCCCTTTTCACG
 
. : . : . : . : . : . :
JMSF052O13+ CTGAGCATTTTGTACTGTGTTTGTATCCAAACGGCGTCGTTGAGGAGGTTTTCAACTTCT
JMSF049J05+ CTGAGCATTTTGTACTGTGTTTGTATCCAAACGGCGTCGTTGAGGAGGTTTTCAACTTCT
                      ____________________________________________________________
consensus CTGAGCATTTTGTACTGTGTTTGTATCCAAACGGCGTCGTTGAGGAGGTTTTCAACTTCT
 
. : . : . : . : . : . :
JMSF052O13+ TCCAACGGCTAGCTTCAAACGACGACGTTTAGCTCT
JMSF049J05+ TCCAACGGCTAGCTTCAAACGACGACGTTTAGCTCTTCTCCGCAACGGCTCCAACGACTC
                      ____________________________________________________________
consensus TCCAACGGCTAGCTTCAAACGACGACGTTTAGCTCTTCTCCGCAACGGCTCCAACGACTC
 
. : . : . : . : . : . :
JMSF049J05+ CCCTTCATACGCCGTCGTTTAGATAAGTGACTTGTTTATTCGAATTAACCCAAAACGACC
                      ____________________________________________________________
consensus CCCTTCATACGCCGTCGTTTAGATAAGTGACTTGTTTATTCGAATTAACCCAAAACGACC