Contig 013554:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF029L04Sequence631013554 (3)ref|XP_006353762.1|1e-99PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Solanum tuberosum]726007257 (3)ref|XP_004243912.1|6e-54PREDICTED: microtubule-associated protein TORTIFOLIA1 [Solanum lycopersicum] re
JMSF049B18Sequence709013554 (3)ref|XP_006353762.1|4e-99PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Solanum tuberosum]780007257 (3)ref|XP_004243912.1|2e-54PREDICTED: microtubule-associated protein TORTIFOLIA1 [Solanum lycopersicum] re
JMSF052K09Sequence667013554 (3)ref|XP_006353762.1|1e-98PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Solanum tuberosum]832007257 (3)ref|XP_009618427.1|5e-58PREDICTED: microtubule-associated protein TORTIFOLIA1 [Nicotiana tomentosiformi

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052K09+                        TGCAAAACCAATGTAGGGGGATTTTGGATACTGTCTATGACCCGGGC
JMSF029L04+                        TGCAAAACCAATGTAGGGGGATTTTGGATACTGTCTATGACCCGGGC
JMSF049B18+                      TCTGCAAAACCAATGTAGGGGGATTTTGGATACTGTCTATGACCCGGGC
                      ____________________________________________________________
consensus                        TCTGCAAAACCAATGTAGGGGGATTTTGGATACTGTCTATGACCCGGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052K09+           CAAGCACAGTGCCGAACCAGATTGCACCTGCTTATTTTGCTCTCCCAATGCCTCAAAAAG
JMSF029L04+           CAAGCACAGTGCCGAACCAGATTGCACCTGCTTATTTTGCTCTCCCAATGCCTCAAAAAG
JMSF049B18+           CAAGCACAGTGCCGAACCAGATTGCACCTGCTTATTTTGCTCTCCCAATGCCTCAAAAAG
                      ____________________________________________________________
consensus             CAAGCACAGTGCCGAACCAGATTGCACCTGCTTATTTTGCTCTCCCAATGCCTCAAAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052K09+           AGGCCTAACTAGGACAATAAAAACTCCATCGTTCTCATTGTCAGTGCCAAAACAACCAAG
JMSF029L04+           AGGCCTAACTAGGACAATAAAAACTCCATCGTTCTCATTGTCAGTGCCAAAACAACCAAG
JMSF049B18+           AGGCCTAACTAGGACAATAAAAACTCCATCGTTCTCATTGTCAGTGCCAAAACAACCAAG
                      ____________________________________________________________
consensus             AGGCCTAACTAGGACAATAAAAACTCCATCGTTCTCATTGTCAGTGCCAAAACAACCAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052K09+           TTTAGCAGCCAAAACACCAACTGTCTCAACACAAGCATCTCTTACAACAGAATCTGAATC
JMSF029L04+           TTTAGCAGCCAAAACACCAACTGTCTCAACACAAGCATCTCTTACAACAGAATCTGAATC
JMSF049B18+           TTTAGCAGCCAAAACACCAACTGTCTCAACACAAGCATCTCTTACAACAGAATCTGAATC
                      ____________________________________________________________
consensus             TTTAGCAGCCAAAACACCAACTGTCTCAACACAAGCATCTCTTACAACAGAATCTGAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052K09+           CTTCAGCCGTTTAACAATGCTGGCTACCATCTTTGCAAGATGCGGGCCGACAAGGTTGTC
JMSF029L04+           CTTCAGCCGTTTAACAATGCTGGCTACCATCTTTGCAAGATGCGGGCCGACAAGGTTGTC
JMSF049B18+           CTTCAGCCGTTTAACAATGCTGGCTACCATCTTTGCAAGATGCGGGCCGACAAGGTTGTC
                      ____________________________________________________________
consensus             CTTCAGCCGTTTAACAATGCTGGCTACCATCTTTGCAAGATGCGGGCCGACAAGGTTGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052K09+           ATGGAGGCTGGCTAGGGAGCCCATTAATCGAATGCATTCCTTACGAACAGCACTTTTCTG
JMSF029L04+           ATGGAGGCTGGCTAGGGAGCCCATTAATCGAATGCATTCCTTACGAACAGCACTTTTCTG
JMSF049B18+           ATGGAGGCTGGCTAGGGAGCCCATTAATCGAATGCATTCCTTACGAACAGCACTTTTCTG
                      ____________________________________________________________
consensus             ATGGAGGCTGGCTAGGGAGCCCATTAATCGAATGCATTCCTTACGAACAGCACTTTTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052K09+           TTCTGAATCTGTATCTAATATGCAAGACAGAAATGGGGTAATCCCATTTGGGGTCAAGCA
JMSF029L04+           TTCTGAATCTGTATCTAATATGCAAGACAGAAATGGGGTAATCCCATTTGGGGTCAAGCA
JMSF049B18+           TTCTGAATCTGTATCTAATATGCAAGACAGAAATGGGGTAATCCCATTTGGGGTCAAGCA
                      ____________________________________________________________
consensus             TTCTGAATCTGTATCTAATATGCAAGACAGAAATGGGGTAATCCCATTTGGGGTCAAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052K09+           CTCAATAATTTTCTCAAGTTCCTCCACAGCAATTTGATACGTATCCCTATCAGCAAGTTT
JMSF029L04+           CTCAATAATTTTCTCAAGTTCCTCCACAGCAATTTGATACGTATCCCTATCAGCAAGTTT
JMSF049B18+           CTCAATAATTTTCTCAAGTTCCTCCACAGCAATTTGATACGTATCCCTATCAGCAAGTTT
                      ____________________________________________________________
consensus             CTCAATAATTTTCTCAAGTTCCTCCACAGCAATTTGATACGTATCCCTATCAGCAAGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052K09+           GTTCAGTGCAATAACTACGCGTTGCTTAAGTTCAAAAACAGCCTGATGGCTGTTCTTTGC
JMSF029L04+           GTTCAGTGCAATAACTACGCGTTGCTTAAGTTCAAAAACAGCCTGATGGCTGTTCTTTGC
JMSF049B18+           GTTCAGTGCAATAACTACGCGTTGCTTAAGTTCAAAAACAGCCTGATGGCTGTTCTTTGC
                      ____________________________________________________________
consensus             GTTCAGTGCAATAACTACGCGTTGCTTAAGTTCAAAAACAGCCTGATGGCTGTTCTTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052K09+           GTTTCCTTTCCCTTTCACCATATTTTCATGCGTCTTCATTTCGTAGTTTATTCACTGCCA
JMSF029L04+           GTTTCCTTTCCCTTTCACCATATTTTCATGCGTCTTCATTTCGTAGTTTATTCACTGCCA
JMSF049B18+           GTTTCCTTTCCCTTTCACCATATTTTCATGCGTCTTCATTTCGTAGTTTATTCACTGCCA
                      ____________________________________________________________
consensus             GTTTCCTTTCCCTTTCACCATATTTTCATGCGTCTTCATTTCGTAGTTTATTCACTGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052K09+           TAGCCTGCCGGCTTCAACTTTCACGTTCCCCCTACAACTTCAAATTCTCCCTATCTCTCT
JMSF029L04+           TAGCCTGCCGGCTTCAACTTTCACGTTCCCCCTACAACTT                    
JMSF049B18+           TAGCCTGCCGGCTTCAACTTTCACGTTCCCCCTACAACTTCAAATTCTCCCTATCTCTCT
                      ____________________________________________________________
consensus             TAGCCTGCCGGCTTCAACTTTCACGTTCCCCCTACAACTTCAAATTCTCCCTATCTCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052K09+           CGCACTCGCACAGAAGAAG                                         
JMSF049B18+           CGCACTCGCACAGAAGAAGAGGTAAGCGGTGGGGAGTCGGGGTTTAAGTTTTGGCGCTCC
                      ____________________________________________________________
consensus             CGCACTCGCACAGAAGAAGAGGTAAGCGGTGGGGAGTCGGGGTTTAAGTTTTGGCGCTCC