Contig 013550:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018J11Sequence515013550 (2)ref|XP_002300673.2|1e-35hypothetical protein POPTR_0002s01580g [Populus trichocarpa] gb|EEE79946.2| hypo756012584 (2)
JMSF048N18Sequence698013550 (2)ref|XP_002510619.1|1e-81pseudouridylate synthase, putative [Ricinus communis] gb|EEF52806.1| pseudouridy759012584 (2)ref|XP_002510619.1|7e-19pseudouridylate synthase, putative [Ricinus communis] gb|EEF52806.1| pseudouridy

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048N18+                                 CCTATCGCGATGAGCAGATGGGTCGAGAGCAAAAACAG
                      ____________________________________________________________
consensus                                   CCTATCGCGATGAGCAGATGGGTCGAGAGCAAAAACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048N18+           GGATTAAGTACACATACCTCCGCCGATCACAGAACTTCTTAGCATTAAACGACGCCGTCG
                      ____________________________________________________________
consensus             GGATTAAGTACACATACCTCCGCCGATCACAGAACTTCTTAGCATTAAACGACGCCGTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048N18+           TCCGCTTGTAACCGAAGATACGAATCTGGGAAGCGAGGTTCGAGTTGAGGCGATCGACCA
                      ____________________________________________________________
consensus             TCCGCTTGTAACCGAAGATACGAATCTGGGAAGCGAGGTTCGAGTTGAGGCGATCGACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018J11+             CCAGGAGGATCAATGTAAAACCGACCCGAAACGACTTGCCCCACTGCGCTGACGCCCT
JMSF048N18+           AGCCAGGAGGATCAATGTAAAACCGACCCGAAACGACTTGCCCCACTGCGCTGACGCCCT
                      ____________________________________________________________
consensus             AGCCAGGAGGATCAATGTAAAACCGACCCGAAACGACTTGCCCCACTGCGCTGACGCCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018J11+           NATCGGTCCGGGCGGAGCGCGCCCAGTCATACCGCCTGGGCTGGCCCCTATCTTGCTCCG
JMSF048N18+           TATCGGTCCGGGCGGAGCGCGCCCAGTCATACCGCCTGGGCTGGCCCCTATCTTGCTCCG
                      ____________________________________________________________
consensus             TATCGGTCCGGGCGGAGCGCGCCCAGTCATACCGCCTGGGCTGGCCCCTATCTTGCTCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018J11+           GCACCGCGCCGGCGTGGAAGAGCGCTTCTTCGAGGTCGCCTTCGATCGTTTTGGCTCCGG
JMSF048N18+           GCACCGCGCCGGCGTGGAAGAGCGCTTCTTCGAGGTCGCCTTCGATCGTTTTGGCTCCGG
                      ____________________________________________________________
consensus             GCACCGCGCCGGCGTGGAAGAGCGCTTCTTCGAGGTCGCCTTCGATCGTTTTGGCTCCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018J11+           GATTCTTCTGCATGCCCTGATACCCCACCCCGCAGTACGCGAAGAAGATCGCGATTTTGC
JMSF048N18+           GATTCTTCTGCATGCCCTGATACCCCACCCCGCAGTACGCGAAGAAGATCGCGATTTTGC
                      ____________________________________________________________
consensus             GATTCTTCTGCATGCCCTGATACCCCACCCCGCAGTACGCGAAGAAGATCGCGATTTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018J11+           GACGCTTGTACTTGGGTTTCCTCTCCGGTGGAGCACTGCCGTCTGCGGCGGCGACGGCCG
JMSF048N18+           GACGCTTGTACTTGGGTTTCCTCTCCGGTGGAGCACTGCCGTCTGCGGCGGCGACGGCCG
                      ____________________________________________________________
consensus             GACGCTTGTACTTGGGTTTCCTCTCCGGTGGAGCACTGCCGTCTGCGGCGGCGACGGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018J11+           GGTCAAATTCTTCATCGTCAGAGGTTGTGGTGGTGGACATCTTCTGCTTCTTTGGAGCCG
JMSF048N18+           GGTCAAATTCTTCATCGTCAGAGGTTGTGGTGGTGGACATCTTCTGCTTCTTTGGAGCCG
                      ____________________________________________________________
consensus             GGTCAAATTCTTCATCGTCAGAGGTTGTGGTGGTGGACATCTTCTGCTTCTTTGGAGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018J11+           GCTCTTCTGGTAGGGGTGAAGGAGGGTTTGGTTTATCCATTTTCAGTGAAAGAGTATAAA
JMSF048N18+           GCTCTTCTGGTAGGGGTGAAGGAGGGTTTGGTTTATCCATTTTCAGTGAAAGAGTATAAA
                      ____________________________________________________________
consensus             GCTCTTCTGGTAGGGGTGAAGGAGGGTTTGGTTTATCCATTTTCAGTGAAAGAGTATAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018J11+           TTTCTAGCAATGGCTGCTCGTCCCTGTCGACAAAAAACCCTAAAGAAACTGCTCTTTTGG
JMSF048N18+           TTTCTAGCAATGGCTGCTCGTCCCTGTCGACAAAAAACCCTAAAGAAACTGCTCTTTTGG
                      ____________________________________________________________
consensus             TTTCTAGCAATGGCTGCTCGTCCCTGTCGACAAAAAACCCTAAAGAAACTGCTCTTTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018J11+           GCTAACACTTCACGCTTCTCCGGGTTGTACCTTTCT                        
JMSF048N18+           GCTAACACTTCACGCTTCTCCGGGTTGTACCTTTCTACTCCGTGTGCTGTACCACCGGGC
                      ____________________________________________________________
consensus             GCTAACACTTCACGCTTCTCCGGGTTGTACCTTTCTACTCCGTGTGCTGTACCACCGGGC