Contig 013548:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022M07Sequence626013548 (4)ref|XP_009599649.1|3e-12PREDICTED: RING finger protein 10 [Nicotiana tomentosiformis]766002979 (3)ref|XP_006338736.1|1e-56PREDICTED: RING finger protein 10-like [Solanum tuberosum]
JMSF036M15Sequence636013548 (4)ref|XP_009599649.1|4e-14PREDICTED: RING finger protein 10 [Nicotiana tomentosiformis]709006945 (12)ref|XP_002870774.1|6e-19predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH47033.1| predicted pr
JMSF045G10Sequence768013548 (4)ref|XP_009599649.1|1e-42PREDICTED: RING finger protein 10 [Nicotiana tomentosiformis]819002979 (3)ref|XP_006338736.1|3e-55PREDICTED: RING finger protein 10-like [Solanum tuberosum]
JMSF048G08Sequence631013548 (4)ref|XP_009599649.1|3e-12PREDICTED: RING finger protein 10 [Nicotiana tomentosiformis]737002979 (3)ref|XP_006338736.1|4e-52PREDICTED: RING finger protein 10-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF045G10+                   CAAGCATATTGGACACTGCACGGGAAACGGGGTGGAAAACTTTACACAAATT
                      ____________________________________________________________
consensus                     CAAGCATATTGGACACTGCACGGGAAACGGGGTGGAAAACTTTACACAAATT
 
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JMSF045G10+           ATATCCTCCCACTCTAACATTTTATCAGGATCCATAGACTCAGGCACGTAATTCCCAGAA
                      ____________________________________________________________
consensus             ATATCCTCCCACTCTAACATTTTATCAGGATCCATAGACTCAGGCACGTAATTCCCAGAA
 
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JMSF045G10+           CTGAACACAACAAATTTGTAATTTGCTTGAAGAAACAAGTCTTTGTTGTATGGCTTTCTC
JMSF022M07+                                        AAGAAACAAGTCTTTGTTGTATGGCTTTCTC
JMSF036M15+                                      TGAAGAAACAAGTCTTTGTTGTATGGCTTTCTC
JMSF048G08+                                        AAGAAACAAGTCTTTGTTGTATGGCTTTCTC
                      ____________________________________________________________
consensus             CTGAACACAACAAATTTGTAATTTGCTTGAAGAAACAAGTCTTTGTTGTATGGCTTTCTC
 
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JMSF045G10+           TTTGGCTGCCTTCTTGGAGGAGGAGCCCTGGACTTTGGCCGAGAAATGGGATCATAATGA
JMSF022M07+           TTTGGCTGCCTTCTTGGAGGAGGAGCCCTGGACTTTGGCCGAGAAATGGGATCATAATGA
JMSF036M15+           TTTGGCTGCCTTCTTGGAGGAGGAGCCCTGGACTTTGGCCGAGAAATGGGATCATAATGA
JMSF048G08+           TTTGGCTGCCTTCTTGGAGGAGGAGCCCTGGACTTTGGCCGAGAAATGGGATCATAATGA
                      ____________________________________________________________
consensus             TTTGGCTGCCTTCTTGGAGGAGGAGCCCTGGACTTTGGCCGAGAAATGGGATCATAATGA
 
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JMSF045G10+           AAATTCAGCAAGTGGTTCCCACTAACCATCTGGGTTCTTCTCCCAGTGGGACGTGGCATG
JMSF022M07+           AAATTCAGCAAGTGGTTCCCACTAACCATCTGGGTTCTTCTCCCAGTGGGACGTGGCATG
JMSF036M15+           AAATTCAGCAAGTGGTTCCCACTAACCATCTGGGTTCTTCTCCCAGTGGGACGTGGCATG
JMSF048G08+           AAATTCAGCAAGTGGTTCCCACTAACCATCTGGGTTCTTCTCCCAGTGGGACGTGGCATG
                      ____________________________________________________________
consensus             AAATTCAGCAAGTGGTTCCCACTAACCATCTGGGTTCTTCTCCCAGTGGGACGTGGCATG
 
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JMSF045G10+           CTTCCTTGAGATCTAGTGGATCCAGAATTGTTGTGACTGGTGGCAGGTAGACCTGGTCCG
JMSF022M07+           CTTCCTTGAGATCTAGTGGATCCAGAATTGTTGTGACTGGTGGCAGGTAGACCTGGTCCG
JMSF036M15+           CTTCCTTGAGATCTAGTGGATCCAGAATTGTTGTGACTGGTGGCAGGTAGACCTGGTCCG
JMSF048G08+           CTTCCTTGAGATCTAGTGGATCCAGAATTGTTGTGACTGGTGGCAGGTAGACCTGGTCCG
                      ____________________________________________________________
consensus             CTTCCTTGAGATCTAGTGGATCCAGAATTGTTGTGACTGGTGGCAGGTAGACCTGGTCCG
 
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JMSF045G10+           GGAGATTTCCGTCGGTCATCCACTGAGATCTGACCAGTGCTATGGTATGTCAAAGTTTTA
JMSF022M07+           GGAGATTTCCGTCGGTCATCCACTGAGATCTGACCAGTGCTATGGTATGTCAAAGTTTTA
JMSF036M15+           GGAGATTTCCGTCGGTCATCCACTGAGATCTGACCAGTGCTATGGTATGTCAAAGTTTTA
JMSF048G08+           GGAGATTTCCGTCGGTCATCCACTGAGATCTGACCAGTGCTATGGTATGTCAAAGTTTTA
                      ____________________________________________________________
consensus             GGAGATTTCCGTCGGTCATCCACTGAGATCTGACCAGTGCTATGGTATGTCAAAGTTTTA
 
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JMSF045G10+           ATTCCATTTTGACCTACTGACATATTCACCTTTTCTGGAGATCCACAGGAACCAAGTGCA
JMSF022M07+           ATTCCATTTTGACCTACTGACATATTCACCTTTTCTGGAGATCCACAGGAACCAAGTGCA
JMSF036M15+           ATTCCATTTTGACCTACTGACATATTCACCTTTTCTGGAGATCCACAGGAACCAAGTGCA
JMSF048G08+           ATTCCATTTTGACCTACTGACATATTCACCTTTTCTGGAGATCCACAGGAACCAAGTGCA
                      ____________________________________________________________
consensus             ATTCCATTTTGACCTACTGACATATTCACCTTTTCTGGAGATCCACAGGAACCAAGTGCA
 
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JMSF045G10+           GCAGGTCCCATTGAACTTGTTTCTGAGAAACTGCAGGACGAAGATGAGGCAGAATCGGAA
JMSF022M07+           GCAGGTCCCATTGAACTTGTTTCTGAGAAACTGCAGGACGAAGATGAGGCAGAATCGGAA
JMSF036M15+           GCAGGTCCCATTGAACTTGTTTCTGAGAAACTGCAGGACGAAGATGAGGCAGAATCGGAA
JMSF048G08+           GCAGGTCCCATTGAACTTGTTTCTGAGAAACTGCAGGACGAAGATGAGGCAGAATCGGAA
                      ____________________________________________________________
consensus             GCAGGTCCCATTGAACTTGTTTCTGAGAAACTGCAGGACGAAGATGAGGCAGAATCGGAA
 
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JMSF045G10+           TCAGCGATTCGTAGGGAGCCCATACCGGAGATGGACAAAGAGGGTTCTTCTTGCTGGTGT
JMSF022M07+           TCAGCGATTCGTAGGGAGCCCATACCGGAGATGGACAAAGAGGGTTCTTCTTGCTGGTGT
JMSF036M15+           TCAGCGATTCGTAGGGAGCCCATACCGGAGATGGACAAAGAGGGTTCTTCTTGCTGGTGT
JMSF048G08+           TCAGCGATTCGTAGGGAGCCCATACCGGAGATGGACAAAGAGGGTTCTTCTTGCTGGTGT
                      ____________________________________________________________
consensus             TCAGCGATTCGTAGGGAGCCCATACCGGAGATGGACAAAGAGGGTTCTTCTTGCTGGTGT
 
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JMSF045G10+           TGATTTGGGAAATAAAGGAATCCATGATTGGAATTAGGGTTTGTAGAGCAGGCCCGAGGC
JMSF022M07+           TGATTTGGGAAATAAAGGAATCCATGATTGGAATTAGGGTTTGTAGAGCAGGCCCGAGGC
JMSF036M15+           TGATTTGGGAAATAAAGGAATCCATGATTGGAATTAGGGTTTGTAGAGCAGGCCCGAGGC
JMSF048G08+           TGATTTGGGAAATAAAGGAATCCATGATTGGAATTAGGGTTTGTAGAGCAGGCCCGAGGC
                      ____________________________________________________________
consensus             TGATTTGGGAAATAAAGGAATCCATGATTGGAATTAGGGTTTGTAGAGCAGGCCCGAGGC
 
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JMSF045G10+           GAAGAAGACGACGATGCTGAACCTGATTGATTCTGCGAGGGCGAGATGGACATGAAATTT
JMSF022M07+           GAAGAAGACGACGATGCTGAACCTGATTGATTCTGCGAGGGCGAGATGGACATGAAATTT
JMSF036M15+           GAAGAAGACGACGATGCTGAACCTGATTGATTCTGCGAGGGCGAGATGGACATGAAATTT
JMSF048G08+           GAAGAAGACGACGATGCTGAACCTGATTGATTCTGCGAGGGCGAGATGGACATGAAATTT
                      ____________________________________________________________
consensus             GAAGAAGACGACGATGCTGAACCTGATTGATTCTGCGAGGGCGAGATGGACATGAAATTT
 
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JMSF045G10+           CAATCGAAGTTTTCCTTAGAGAGGTGTACTTTCGCGGTTGCTCAAGCTGG          
JMSF022M07+           CAATCGAAGTTTTCCTTAGAGAGGTGTACTTTCGCGGTTGCTCAAGCTGG          
JMSF036M15+           CAATCGAAGTTTTCCTTAGAGAGGTGTACTTTCGCGGTTGCTCAAGCTGG          
JMSF048G08+           CAATCGAAGTTTTCCTTAGAGAGGTGTACTTTCGCGGTTGCTCAAGCTGGCCAGTGGTCC
                      ____________________________________________________________
consensus             CAATCGAAGTTTTCCTTAGAGAGGTGTACTTTCGCGGTTGCTCAAGCTGGCCAGTGGTCC