Contig 013546:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016H17Sequence562013546 (7)emb|CDP02140.1|1e-37unnamed protein product [Coffea canephora]
JMFN018O24Sequence580013546 (7)emb|CDP02140.1|7e-35unnamed protein product [Coffea canephora]
JMFN046A10Sequence589013546 (7)emb|CDP02140.1|1e-37unnamed protein product [Coffea canephora]
JMSF019L14Sequence248013546 (7)emb|CDP02140.1|7e-30unnamed protein product [Coffea canephora]114013546 (7)
JMSF048B24Sequence560013546 (7)emb|CDP02140.1|1e-37unnamed protein product [Coffea canephora]167013546 (7)

Alignment

This contig is upended


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JMFN018O24+                                                                    TTC
                      ____________________________________________________________
consensus                                                                      TTC
 
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rJMSF048B24-                           AGTTCACAATAATGAGTTCATGTATATCTCGATGATGAACATC
JMFN018O24+           AGAAGAGAGAACATTATAGTTCACAATAATGAGTTCATGTATATCTCGATGATGAACATC
JMFN046A10+                                                                GAACATC
                      ____________________________________________________________
consensus             AGAAGAGAGAACATTATAGTTCACAATAATGAGTTCATGTATATCTCGATGATGAACATC
 
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rJMSF048B24-          AAGAAACTCAAGAATCAATCAAACATGAGTTGTATACATCTTTGTTATACAAAATGGCTA
rJMSF019L14-                               AACATGAGTTGTATACATCTTTGTTATACAAAATGGCTA
JMFN018O24+           AAGAAACTCAAGAATC-ATCAAACATGAGTTGTATACATCTTTGTTATACAAAATGGCTA
JMFN046A10+           AAGAAACTCAAGAATCAATCAAACATGAGTTGTATACATCTTTGTTATACAAAATGGCTA
                      ____________________________________________________________
consensus             AAGAAACTCAAGAATCAATCAAACATGAGTTGTATACATCTTTGTTATACAAAATGGCTA
 
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rJMSF048B24-          CTGCTTGGCTTATTGAATGAAGCATCTAAACAGTTCAGGAAACAAAAAAAAAAA      
rJMSF019L14-          CTGCTTGGCTTATTGAATGAAGCATCTAAACAGTTCAGGAAACAAAAAAAAAAA      
JMFN018O24+           CTGCTTGGCTTATTGAATGAAGCATCTAAACAGTTCAGGAAACAAAAAAAAAAAAAGGAG
JMFN046A10+           CTGCTTGGCTTATTGAATGAAGCATCTAAACAGTTCAGGAAACAAAAAAAAAAAAAGGAG
JMFF016H17+                                                       AAAAAAAAAAAAGGAG
JMSF048B24+                                                       AAAAAAAAAAAAGGAG
                      ____________________________________________________________
consensus             CTGCTTGGCTTATTGAATGAAGCATCTAAACAGTTCAGGAAACAAAAAAAAAAAAAGGAG
 
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JMFN018O24+           TTTTTGACTTACAGCATTCATGGTGGAACTTGGAAGAGCTGAATGAGGTAAAGATGCCTT
JMFN046A10+           TTTTTGACTTACAGCATTCATGGTGGAACTTGGAAGAGCTGAATGAGGTAAAGATGCCTT
JMFF016H17+           TTTTTGACTTACAGCATTCATGGTGGAACTTGGAAGAGCTGAATGAGGTAAAGATGCCTT
JMSF048B24+           TTTTTGACTTACAGCATTCATGGTGGAACTTGGAAGAGCTGAATGAGGTAAAGATGCCTT
                      ____________________________________________________________
consensus             TTTTTGACTTACAGCATTCATGGTGGAACTTGGAAGAGCTGAATGAGGTAAAGATGCCTT
 
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JMFN018O24+           TGTAGCAAGGTGTGTGATCAACTGATCATTTCTTGGTAGTAAAAAGCATTAAGTCTTGAG
JMFN046A10+           TGTAGCAAGGTGTGTGATCAACTGATCATTTCTTGGTAGTAAAAAGCATTAAGTCTTGAG
JMFF016H17+           TGTAGCAAGGTGTGTGATCAACTGATCATTTCTTGGTAGTAAAAAGCATTAAGTCTTGAG
JMSF048B24+           TGTAGCAAGGTGTGTGATCAACTGATCATTTCTTGGTAGTAAAAAGCATTAAGTCTTGAG
                      ____________________________________________________________
consensus             TGTAGCAAGGTGTGTGATCAACTGATCATTTCTTGGTAGTAAAAAGCATTAAGTCTTGAG
 
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JMFN018O24+           AATGAAAAATGAGGCCGCAGAGATTGCTACTTTTGCAGTCATACAGTTTTAAGCATGTTT
JMFN046A10+           AATGAAAAATGAGGCCGCAGAGATTGCTACTTTTGCAGTCATACAGTTTTAAGCATGTTT
JMFF016H17+           AATGAAAAATGAGGCCGCAGAGATTGCTACTTTTGCAGTCATACAGTTTTAAGCATGTTT
JMSF048B24+           AATGAAAAATGAGGCCGCAGAGATTGCTACTTTTGCAGTCATACAGTTTTAAGCATGTTT
                      ____________________________________________________________
consensus             AATGAAAAATGAGGCCGCAGAGATTGCTACTTTTGCAGTCATACAGTTTTAAGCATGTTT
 
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JMFN018O24+           GAGGTTGTCCCCATAGTAGTAAGCAGTCCCAACCATCAACGCCACCGTAGCGCCCTGTGC
JMFN046A10+           GAGGTTGTCCCCATAGTAGTAAGCAGTCCCAACCATCAACGCCACCGTAGCGCCCTGTGC
JMSF019L14+                                                        CGTAGCGCCCTGTGC
JMFF016H17+           GAGGTTGTCCCCATAGTAGTAAGCAGTCCCAACCATCAACGCCACCGTAGCGCCCTGTGC
JMSF048B24+           GAGGTTGTCCCCATAGTAGTAAGCAGTCCCAACCATCAACGCCACCGTAGCGCCCTGTGC
                      ____________________________________________________________
consensus             GAGGTTGTCCCCATAGTAGTAAGCAGTCCCAACCATCAACGCCACCGTAGCGCCCTGTGC
 
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JMFN018O24+           AACTACACGAGCCCTCATTAGCTTCTGACCTAAATTAGAATTTCCTTGCCGGAAACTAAT
JMFN046A10+           AACTACACGAGCCCTCATTAGCTTCTGACCTAAATTAGAATTTCCTTGCCGGAAACTAAT
JMSF019L14+           AACTACACGAGCCCTCATTAGCTTCTGACCTAAATTAGAATTTCCTTGCCGGAAACTAAT
JMFF016H17+           AACTACACGAGCCCTCATTAGCTTCTGACCTAAATTAGAATTTCCTTGCCGGAAACTAAT
JMSF048B24+           AACTACACGAGCCCTCATTAGCTTCTGACCTAAATTAGAATTTCCTTGCCGGAAACTAAT
                      ____________________________________________________________
consensus             AACTACACGAGCCCTCATTAGCTTCTGACCTAAATTAGAATTTCCTTGCCGGAAACTAAT
 
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JMFN018O24+           CAATCCAGCTGTGAGCACTCCTGCAGTGACAAGTGCACCGAGGGGAACGAGAGGGTTTCT
JMFN046A10+           CAATCCAGCTGTGAGCACTCCTGCAGTGACAAGTGCACCGAGGGGAACGAGAGGGTTTCT
JMSF019L14+           CAATCCAGCTGTGAGCACTCCTGCAGTGACAAGTGCACCGAGGGGAACGAGAGGGTTTCT
JMFF016H17+           CAATCCAGCTGTGAGCACTCCTGCAGTGACAAGTGCACCGAGGGGAACGAGAGGGTTTCT
JMSF048B24+           CAATCCAGCTGTGAGCACTCCTGCAGTGACAAGTGCACCGAGGGGAACGAGAGGGTTTCT
                      ____________________________________________________________
consensus             CAATCCAGCTGTGAGCACTCCTGCAGTGACAAGTGCACCGAGGGGAACGAGAGGGTTTCT
 
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JMFN018O24+           CACACGCTTCTTGTCCGCGAACAGTGCTTCCAATTCAG                      
JMFN046A10+           CACACGCTTCTTGTCCGCGAACAGTGCTTCCAATTCAGGATTAGTAGTCCCCATCTTTTC
JMSF019L14+           CACACGCTTCTTGTCCGCGAACAGTGCTTCCAATTCAGGATTAGTAGTCCCCATCTTTTC
JMFF016H17+           CACACGCTTCTTGTCCGCGAACAGTGCTTCCAATTCAGGATTAGTAGTCCCCATCTTTTC
JMSF048B24+           CACACGCTTCTTGTCCGCGAACAGTGCTTCCAATTCAGGATTAGTAGTCCCCATCTTTTC
                      ____________________________________________________________
consensus             CACACGCTTCTTGTCCGCGAACAGTGCTTCCAATTCAGGATTAGTAGTCCCCATCTTTTC
 
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JMFN046A10+           CGGCCAACCGCCACCGCGCAGCTTTCCGATAACTGATTTAAA                  
JMSF019L14+           CGGCCAACCGCCACCGCGCAGCTTTCCGATAACTGATTTAAACGCGCTCT          
JMFF016H17+           CGGCCAACCGCCACCGCGCAGCTTTCCGATAACTGATTTAAACGCGCTCTCCAATGTTAC
JMSF048B24+           CGGCCAACCGCCACCGCGCAGCTTTCCGATAACTGATTTAAACGCGCTCTCCAATGTTAC
                      ____________________________________________________________
consensus             CGGCCAACCGCCACCGCGCAGCTTTCCGATAACTGATTTAAACGCGCTCTCCAATGTTAC
 
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JMFF016H17+           GCGCCTCCCGCCTGTTGCTTATATATTCACCTACTTTTCGACACTTGGAGCGCAAAGAC 
JMSF048B24+           GCGCCTCCCGCCTGTTGCTTATATATTCACCTACTTTTCGACACTTGGAGCGCAAAGACC
                      ____________________________________________________________
consensus             GCGCCTCCCGCCTGTTGCTTATATATTCACCTACTTTTCGACACTTGGAGCGCAAAGACC