Contig 013542:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF033N06-                                                                     T
                      ____________________________________________________________
consensus                                                                        T
 
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rJMFF033N06-          TCTATAATAAGAATAATAATACATTTATGAGAAGGGAAAAAAATAAAAATAATAATAATG
rJMSF037J24-                            ATACATTTATGAGAAGGGAAAAAAATAAAAATAATAATAATG
                      ____________________________________________________________
consensus             TCTATAATAAGAATAATAATACATTTATGAGAAGGGAAAAAAATAAAAATAATAATAATG
 
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rJMFF033N06-          ATTCATACAGCTGCTGTTTTTTACAATTATGGAACAGCTGGGTGGGGGTCTTATTATTNT
rJMSF037J24-          ATTCATACAGCTGCTGTTTTTTACAATTATGGAACAGCTGGGTGGGGGTCTTATTATTTT
                      ____________________________________________________________
consensus             ATTCATACAGCTGCTGTTTTTTACAATTATGGAACAGCTGGGTGGGGGTCTTATTATTTT
 
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rJMFF033N06-          AAANCCCTGANAAGCTGGCTTCCAAGGGTCACAACTGGGGTTCCTTCCCCCATCATAGTA
rJMSF037J24-          AAAGCCCTGAAAAGCTGGCTTCCAAGGGTCACAACTGGGGTTCCTTCCCCCATCATAGTA
                      ____________________________________________________________
consensus             AAAGCCCTGAAAAGCTGGCTTCCAAGGGTCACAACTGGGGTTCCTTCCCCCATCATAGTA
 
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rJMFF033N06-          NTGAAGCTCATTTCTTTCTGAAGTATGNNATNTANTTCTGTGACCACATAACTCATGCCC
rJMSF037J24-          GTCAAGCTCATTTCTTTCTCAAGTATGCGATCTAATTCTGTGACCACATAACTCATGCCC
                      ____________________________________________________________
consensus             GTGAAGCTCATTTCTTTCTGAAGTATGCGATCTAATTCTGTGACCACATAACTCATGCCC
 
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rJMFF033N06-          GCTCGCCTTTCNCTCNAANGNTCCACACACCGAACCATCNACTCNACAAATTCTTCCATG
rJMSF037J24-          GCTCGCCTTTCACTCGAAGGCTCCACACACCGAACCATCAACTCAACAAATTCTTCCATG
                      ____________________________________________________________
consensus             GCTCGCCTTTCACTCGAAGGCTCCACACACCGAACCATCAACTCAACAAATTCTTCCATG
 
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rJMFF033N06-          CCTTGNGCCNNGAANCTATTGCCCAATTTNTGATCAATGATGGTGGATATGCTGCCNGAA
rJMSF037J24-          CCTTGTGCCGTGAAGCTATTGCCCAATTTTTGATCAATGATGGTGGATATGCTGCCCGAA
                      ____________________________________________________________
consensus             CCTTGTGCCGTGAAGCTATTGCCCAATTTTTGATCAATGATGGTGGATATGCTGCCCGAA
 
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rJMFF033N06-          TCTTGATGATTTTCCA                                            
rJMSF037J24-          TCTTGATGATTTTCCACCCATTCAACTATGTTCCCATCTGTGCTCGAAGACAGTAAATCC
                      ____________________________________________________________
consensus             TCTTGATGATTTTCCACCCATTCAACTATGTTCCCATCTGTGCTCGAAGACAGTAAATCC
 
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rJMSF037J24-          ATTGCTTCCTGCCCGCTTACTAGCTCCAAAAGAAATACTCCAAAACTGTAAACATCACTT
                      ____________________________________________________________
consensus             ATTGCTTCCTGCCCGCTTACTAGCTCCAAAAGAAATACTCCAAAACTGTAAACATCACTT
 
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rJMSF037J24-          TTCTCTGAGAAACGCCGAAACTCTCTTACCTCTGGTGCGAGGAAAATTTCATCAGCTGTG
JMSF037J24+                                                CGAGGAAAATTTCATCAGCTGTG
                      ____________________________________________________________
consensus             TTCTCTGAGAAACGCCGAAACTCTCTTACCTCTGGTGCGAGGAAAATTTCATCAGCTGTG
 
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rJMSF037J24-          ATGGAAGAGGATGGGCCTGCAACATCAAATCTTCCAAGAAAATTGCGAACCCCTGCGTCT
JMSF037J24+           ATGGAAGAGGATGGGCCTGCAACATCAAATCTTCCAAGAAAATTGCGAACCCCTGCGTCT
                      ____________________________________________________________
consensus             ATGGAAGAGGATGGGCCTGCAACATCAAATCTTCCAAGAAAATTGCGAACCCCTGCGTCT
 
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rJMSF037J24-          GCCACCTTAGCAATGAAGTTTTCATCTACAAGAACATTCCCCGTCTTGAAATCCTTATGA
JMSF037J24+           GCCACCTTAGCAATGAAGTTTTCATCTACAAGAACATTCCCCGTCTTGAAATCCTTATGA
                      ____________________________________________________________
consensus             GCCACCTTAGCAATGAAGTTTTCATCTACAAGAACATTCCCCGTCTTGAAATCCTTATGA
 
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rJMSF037J24-          ATTAAACGAGGACTTTGGGAGTGAAGA                                 
JMSF037J24+           ATTAAACGAGGACTTTGGGAGTGAAGATGCTCCAAACTGATTTTGCAGAGGATCACCTTT
JMSF047N21+                                              ACTGATTTTGCAGAGGATCACCTTT
                      ____________________________________________________________
consensus             ATTAAACGAGGACTTTGGGAGTGAAGATGCTCCAAACTGATTTTGCAGAGGATCACCTTT
 
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JMSF037J24+           AGCTGCCCCTATAGCTATTGAAAGCCTATGCTTGAATTCAAGCCTCTCCCGTGAAACATG
JMSF047N21+           AGCTGCCCCTATAGCTATTGAAAGCCTATGCTTGAATTCAAGCCTCTCCCGTGAAACATG
                      ____________________________________________________________
consensus             AGCTGCCCCTATAGCTATTGAAAGCCTATGCTTGAATTCAAGCCTCTCCCGTGAAACATG
 
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JMSF037J24+           AGCAG-ACCATACAAGTGAATGGATACACTCCCATTCGGTATGTACTCATACACAAGTAT
JMSF047N21+           AGCAGCACCATACAAGTGAATGGATACACTCCCATTCGGTATGTACTCATACACAAGTAT
                      ____________________________________________________________
consensus             AGCAGCACCATACAAGTGAATGGATACACTCCCATTCGGTATGTACTCATACACAAGTAT
 
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JMSF037J24+           CTGTTGCTTGTTTTCCTGGCAGTAACCCAAGAGAGTGACTAAATTCCGGTGTTGAATAGA
JMSF047N21+           CTGTTGCTTGTTTTCCTGGCAGTAACCCAAGAGAGTGACTAAATTCCGGTGTTGAATAGA
                      ____________________________________________________________
consensus             CTGTTGCTTGTTTTCCTGGCAGTAACCCAAGAGAGTGACTAAATTCCGGTGTTGAATAGA
 
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JMSF037J24+           TGAGAGATACCGAGCCTCATCAATGAACTCTTGAGTAGGGGCACCTGGCCGCTTTTTAAT
JMSF047N21+           TGAGAGATACCGAGCCTCATCAATGAACTCTTGAGTAGGGGCACCTGGCCGCTTTTTAAT
                      ____________________________________________________________
consensus             TGAGAGATACCGAGCCTCATCAATGAACTCTTGAGTAGGGGCACCTGGCCGCTTTTTAAT
 
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JMSF037J24+           TGCTACAAGCATTCCATCCTGAAGCAAACCTTTGTACACCTCTCCAAATTTTCCTTGGCC
JMSF047N21+           TGCTACAAGCATTCCATCCTGAAGCAAACCTTTGTACACCTCTCCAAATTTTCCTTGGCC
                      ____________________________________________________________
consensus             TGCTACAAGCATTCCATCCTGAAGCAAACCTTTGTACACCTCTCCAAATTTTCCTTGGCC
 
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JMSF037J24+           AATTAAATTCCTATCACTAAAATCTTTGGTTGCCAAAGATAGTTCTTGGAATTGAAAGCA
JMSF047N21+           AATTAAATTCCTATCACTAAAATCTTTGGTTGCCAAAGATAGTTCTTGGAATTGAAAGCA
                      ____________________________________________________________
consensus             AATTAAATTCCTATCACTAAAATCTTTGGTTGCCAAAGATAGTTCTTGGAATTGAAAGCA
 
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JMSF037J24+           CCTTGCACCCCGTAAGGTCAACAACTCAGTTCCAACTGCTCTTCCAACTGAGAGAAGGAG
JMSF047N21+           CCTCGCACCCCGTAAGGTCAACAACTCAGTTCCAACTGCTCTTCCAACTGAGAGAAGGAG
                      ____________________________________________________________
consensus             CCTTGCACCCCGTAAGGTCAACAACTCAGTTCCAACTGCTCTTCCAACTGAGAGAAGGAG
 
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JMSF037J24+           TGCGGAAGCAGAGATCCCGAACTTGATTTGGTAGAGAGAGTAGAAACCTGAGAGTCACCC
JMSF047N21+           TGCGGAAGCAGAGATCCCGAACTTGATTTGGTAGAGAGAGTAGAAACCTGAGAGTCACCC
                      ____________________________________________________________
consensus             TGCGGAAGCAGAGATCCCGAACTTGATTTGGTAGAGAGAGTAGAAACCTGAGAGTCACCC
 
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JMSF037J24+           ACACCCACACCCACATTC                                          
JMSF047N21+           ACACCCACACCCACATTCAATCTTACTATGTAGTATGTACTGTAATAAATAACAATCTCC
                      ____________________________________________________________
consensus             ACACCCACACCCACATTCAATCTTACTATGTAGTATGTACTGTAATAAATAACAATCTCC