Contig 013541:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021B04Sequence649013541 (2)ref|XP_009614965.1|1e-25PREDICTED: putative late blight resistance protein homolog R1B-14 [Nicotiana to753021450ref|XP_009774012.1|2e-19PREDICTED: putative late blight resistance protein homolog R1A-10 [Nicotiana sy
JMSF047F21Sequence691013541 (2)ref|XP_009776048.1|2e-26PREDICTED: putative late blight resistance protein homolog R1A-3 [Nicotiana syl109018340

Alignment

This contig is upended


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JMSF021B04+                                         CCTGGCATACCCACAATCGAGATAACTTCA
JMSF047F21+                                        TCCTGGCATACCCACAATCGAGATAACTTCA
                      ____________________________________________________________
consensus                                          TCCTGGCATACCCACAATCGAGATAACTTCA
 
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JMSF021B04+           TGCTTTTCTGATCCGCGAATGAGACGATGGATTATAGCATTAGCCTCCTCATTAAATCCC
JMSF047F21+           TGCTTTTCTGATCCGCGAATGAGACGATGGATTATAGCATTAGCCTCCTCATTAAATCCC
                      ____________________________________________________________
consensus             TGCTTTTCTGATCCGCGAATGAGACGATGGATTATAGCATTAGCCTCCTCATTAAATCCC
 
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JMSF021B04+           ACTACATGCTCTTCCTCCACAAGAGGAGCCTCACTCGGCTTGTCTTCTGTGTTGGCTAAC
JMSF047F21+           ACTACATGCTCTTCCTCCACAAGAGGAGCCTCACTCGGCTTGTCTTCTGTGTTGGCTAAC
                      ____________________________________________________________
consensus             ACTACATGCTCTTCCTCCACAAGAGGAGCCTCACTCGGCTTGTCTTCTGTGTTGGCTAAC
 
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JMSF021B04+           GCTTCACCTCGGAGAACATTCTTATAAACCTGATCATCTTGGATCGTTTTAATGGTGCTA
JMSF047F21+           GCTTCACCTCGGAGAACATTCTTATAAACCTGATCATCTTGGATCGTTTTAATGGTGCTA
                      ____________________________________________________________
consensus             GCTTCACCTCGGAGAACATTCTTATAAACCTGATCATCTTGGATCGTTTTAATGGTGCTA
 
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JMSF021B04+           AGAACCGTCTGAATATCTTTGGCCACTCTCAGTTTTCGACCCTGGTGTTTGAAATCCAGA
JMSF047F21+           AGAACCGTCTGAATATCTTTGGCCACTCTCAGTTTTCGACCCTGGTGTTTGAAATCCAGA
                      ____________________________________________________________
consensus             AGAACCGTCTGAATATCTTTGGCCACTCTCAGTTTTCGACCCTGGTGTTTGAAATCCAGA
 
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JMSF021B04+           CACCGTACCGATTTCTTGAGGTAGTGGGATTTGGCGGCCACCACATATTTGTCCACAAGA
JMSF047F21+           CACCGTACCGATTTCTTGAGGTAGTGGGATTTGGCGGCCACCACATATTTGTCCACAAGA
                      ____________________________________________________________
consensus             CACCGTACCGATTTCTTGAGGTAGTGGGATTTGGCGGCCACCACATATTTGTCCACAAGA
 
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JMSF021B04+           TCCTCTGCCTCGTTGACCACTTTCCGGATCTTGATAATGAGGCGCTTAATGATCTCGTTT
JMSF047F21+           TCCTCTGCCTCGTTGACCACTTTCCGGATCTTGATAATGAGGCGCTTAATGATCTCGTTT
                      ____________________________________________________________
consensus             TCCTCTGCCTCGTTGACCACTTTCCGGATCTTGATAATGAGGCGCTTAATGATCTCGTTT
 
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JMSF021B04+           TCGTAGCGGACCTTTGCGACTTGGCTGAGGAAGGCCTTGAAGTCGCCCAGGTCTACTAGA
JMSF047F21+           TCGTAGCGGACCTTTGCGACTTGGCTGAGGAAGGCCTTGAAGTCGCCCAGGTCTACTAGA
                      ____________________________________________________________
consensus             TCGTAGCGGACCTTTGCGACTTGGCTGAGGAAGGCCTTGAAGTCGCCCAGGTCTACTAGA
 
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JMSF021B04+           AGCTTATTGACGTCGTCCTTGAGGCCGGAGATGAGCTGGAAGTTTTCTTTCAGAAGTTGA
JMSF047F21+           AGCTTATTGACGTCGTCCTTGAGGCCGGAGATGAGCTGGAAGTTTTCTTTCAGAAGTTGA
                      ____________________________________________________________
consensus             AGCTTATTGACGTCGTCCTTGAGGCCGGAGATGAGCTGGAAGTTTTCTTTCAGAAGTTGA
 
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JMSF021B04+           GTCAAATTATCTACCAGCAAATCCACAAGCACTTCTGCCATCTCT               
JMSF047F21+           GTCAAATTATCTACCAGCAAATCCACAAGCACTTCTGCCATCTCTACCTTTGTCAATCTC
                      ____________________________________________________________
consensus             GTCAAATTATCTACCAGCAAATCCACAAGCACTTCTGCCATCTCTACCTTTGTCAATCTC
 
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JMSF047F21+           TGATCTCGTTTGAGCTCAAAAATTCTTAGTAGAAGCCATTGCCATCTTCCATGATTAGTC
                      ____________________________________________________________
consensus             TGATCTCGTTTGAGCTCAAAAATTCTTAGTAGAAGCCATTGCCATCTTCCATGATTAGTC
 
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JMSF047F21+           TGGACATCGGCGATGACTGAGGAGTTGACCTTCTTTCTCAATCCATAGTTCTATACCCCC
                      ____________________________________________________________
consensus             TGGACATCGGCGATGACTGAGGAGTTGACCTTCTTTCTCAATCCATAGTTCTATACCCCC