Contig 013538:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN025D09Sequence578013538 (5)ref|XP_011082420.1|2e-58PREDICTED: lamin-like protein [Sesamum indicum]
JMFN031D05Sequence634013538 (5)ref|XP_011082420.1|3e-58PREDICTED: lamin-like protein [Sesamum indicum]
JMFN046H19Sequence623013538 (5)ref|XP_010094048.1|2e-56Lamin-like protein [Morus notabilis] gb|EXB55138.1| Lamin-like protein [Morus no
JMSF046O18Sequence682013538 (5)ref|XP_011082420.1|2e-58PREDICTED: lamin-like protein [Sesamum indicum]573013538 (5)emb|CAN70727.1|1e-56hypothetical protein VITISV_028080 [Vitis vinifera]

Alignment

This contig is upended


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JMSF046O18+                                                 AAGAAGGAAAAACAAAACAAAA
                      ____________________________________________________________
consensus                                                   AAGAAGGAAAAACAAAACAAAA
 
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rJMSF046O18-                           ATCAACAAATGACAACATTCATTTTCACTTTTACAATTCACTA
JMFN031D05+                            ATCAACAAATGACAACATTCATTTTCACTTTTACAATTCACTA
JMFN046H19+                         TAAATCAACAAATGACAACATTCATTTTCACTTTTACAATTCACTA
JMSF046O18+           AAATCTTCCAATGATAAATCAACAAATGACAACATTCATTTTCACTTTTACAATTCACTA
                      ____________________________________________________________
consensus             AAATCTTCCAATGATAAATCAACAAATGACAACATTCATTTTCACTTTTACAATTCACTA
 
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rJMSF046O18-          CAACTGCGTGCTGGTAAATGGTAAATGGTAAATACTCATTTTTGAATGGTTGGATAGCAA
JMFN031D05+           CAACTGCGTGCTGGTAAATGGTAAATGGTAAATACTCATTTTTGAATGGTTGGATAGCAA
JMFN046H19+           CAACTGCGTGCTGGTAAATGGTAAATGGTAAATACTCATTTTTGAATGGTTGGATAGCAA
JMFN025D09+                         TAAATGGTAAATGGTAAATACTCATTTTTGAATGGTTGGATAGCAA
JMSF046O18+           CAACTGCGTGCTGGTAAATGGTAAATGGTAAATACTCATTTTTGAATGGTTGGATAGCAA
                      ____________________________________________________________
consensus             CAACTGCGTGCTGGTAAATGGTAAATGGTAAATACTCATTTTTGAATGGTTGGATAGCAA
 
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rJMSF046O18-          GCATAATTCTACAGGCTAAATCCCCAAAAGAACCCCAGCAATGATGAGCAGCCAAAGAGC
JMFN031D05+           GCATAATTCTACAGGCTAAATCCCCAAAAGAACCCCAGCAATGATGAGCAGCCAAAGAGC
JMFN046H19+           GCATAATTCTACAGGCTAAATCCCCAAAAGAACCCCAGCAATGATGAGCAGCCAAAGAGC
JMFN025D09+           GCATAATTCTACAGGCTAAATCCCCAAAAGAACCCCAGCAATGATGAGCAGCCAAAGAGC
JMSF046O18+           GCATAATTCTACAGGCTAAATCCCCAAAAGAACCCCAGCAATGATGAGCAGCCAAAGAGC
                      ____________________________________________________________
consensus             GCATAATTCTACAGGCTAAATCCCCAAAAGAACCCCAGCAATGATGAGCAGCCAAAGAGC
 
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rJMSF046O18-          AAGCGGCGGCGTGGAGGCAGAGGCGGCGGACTTGGTGTTTGAATGGTCAGCACCGACGGC
JMFN031D05+           AAGCGGCGGCGTGGAGGCAGAGGCGGCGGACTTGGTGTTTGAATGGTCAGCACCGACGGC
JMFN046H19+           AAGCGGCGGCGTGGAGGCAGAGGCGGCGGACTTGGTGTTTGAATGGTCAGCACCGACGGC
JMFN025D09+           AAGCGGCGGCGTGGAGGCAGAGGCGGCGGACTTGGTGTTTGAATGGTCAGCACCGACGGC
JMSF046O18+           AAGCGGCGGCGTGGAGGCAGAGGCGGCGGACTTGGTGTTTGAATGGTCAGCACCGACGGC
                      ____________________________________________________________
consensus             AAGCGGCGGCGTGGAGGCAGAGGCGGCGGACTTGGTGTTTGAATGGTCAGCACCGACGGC
 
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rJMSF046O18-          GGATTTAGGCGGAGGAGGAAGTGGGTGGACAACAACCGAAACCTTCATGCCATTAAAGCA
JMFN031D05+           GGATTTAGGCGGAGGAGGAAGTGGGTGGACAACAACCGAAACCTTCATGCCATTAAAGCA
JMFN046H19+           GGATTTAGGCGGAGGAGGAAGTGGGTGGACAACAACCGAAACCTTCATGCCATTAAAGCA
JMFN025D09+           GGATTTAGGCGGAGGAGGAAGTGGGTGGACAACAACCGAAACCTTCATGCCATTAAAGCA
JMSF046O18+           GGATTTAGGCGGAGGAGGAAGTGGGTGGACAACAACCGAAACCTTCATGCCATTAAAGCA
                      ____________________________________________________________
consensus             GGATTTAGGCGGAGGAGGAAGTGGGTGGACAACAACCGAAACCTTCATGCCATTAAAGCA
 
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rJMSF046O18-          GCCACCCGTGCCACAAATGAAGTAATACCTCTTAGCCTTGTCGAGGAGGACGAAGTCTTT
JMFN031D05+           GCCACCCGTGCCACAAATGAAGTAATACCTCTTAGCCTTGTCGAGGAGGACGAAGTCTTT
JMFN046H19+           GCCACCCGTGCCACAAATGAAGTAATACCTCTTAGCCTTGTCGAGGAGGACGAAGTCTTT
JMFN025D09+           GCCACCCGTGCCACAAATGAAGTAATACCTCTTAGCCTTGTCGAGGAGGACGAAGTCTTT
JMSF046O18+           GCCACCCGTGCCACAAATGAAGTAATACCTCTTAGCCTTGTCGAGGAGGACGAAGTCTTT
                      ____________________________________________________________
consensus             GCCACCCGTGCCACAAATGAAGTAATACCTCTTAGCCTTGTCGAGGAGGACGAAGTCTTT
 
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rJMSF046O18-          GCCGCTGCTCCAGTTTCCGACAGCCCCTTCCGTTGTGCAGTTGTCGTACCCGGTCTGGTT
JMFN031D05+           GCCGCTGCTCCAGTTTCCGACAGCCCCTTCCGTTGTGCAGTTGTCGTACCCGGTCTGGTT
JMFN046H19+           GCCGCTGCTCCAGTTTCCGACAGCCCCTTCCGTTGTGCAGTTGTCGTACCCGGTCTGGTT
JMFN025D09+           GCCGCTGCTCCAGTTTCCGACAGCCCCTTCCGTTGTGCAGTTGTCGTACCCGGTCTGGTT
JMSF046O18+           GCCGCTGCTCCAGTTTCCGACAGCCCCTTCCGTTGTGCAGTTGTCGTACCCGGTCTGGTT
                      ____________________________________________________________
consensus             GCCGCTGCTCCAGTTTCCGACAGCCCCTTCCGTTGTGCAGTTGTCGTACCCGGTCTGGTT
 
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rJMSF046O18-          CACTTCAAACACATTGTACTGTGTCTTCTGGTACCTAAACGAGATGAGGTCGCCGACGAG
JMFN031D05+           CACTTCAAACACATTGTACTGTGTCTTCTGGTACCTAAACGAGATGAGGTCGCCGACGAG
JMFN046H19+           CACTTCAAACACATTGTACTGTGTCTTCTGGTACCTAAACGAGATGAGGTCGCCGACGAG
JMFN025D09+           CACTTCAAACACATTGTACTGTGTCTTCTGGTACCTAAACGAGATGAGGTCGCCGACGAG
JMSF046O18+           CACTTCAAACACATTGTACTGTGTCTTCTGGTACCTAAACGAGATGAGGTCGCCGACGAG
                      ____________________________________________________________
consensus             CACTTCAAACACATTGTACTGTGTCTTCTGGTACCTAAACGAGATGAGGTCGCCGACGAG
 
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rJMSF046O18-          GAAGGTGTGGTTGTTGGCCCAGAGGGTGTAGTTGATGCCGGGGTTCCAGCCTCGGTTGGC
JMFN031D05+           GAAGGTGTGGTTGTTGGCCCAGAGGGTGTAGTTGATGCCGGGGTTCCAGCCTCGGTTGGC
JMFN046H19+           GAAGGTGTGGTTGTTGGCCCAGAGGGTGTAGTTGATGCCGGGGTTCCAGCCTCGGTTGGC
JMFN025D09+           GAAGGTGTGGTTGTTGGCCCAGAGGGTGTAGTTGATGCCGGGGTTCCAGCCTCGGTTGGC
JMSF046O18+           GAAGGTGTGGTTGTTGGCCCAGAGGGTGTAGTTGATGCCGGGGTTCCAGCCTCGGTTGGC
                      ____________________________________________________________
consensus             GAAGGTGTGGTTGTTGGCCCAGAGGGTGTAGTTGATGCCGGGGTTCCAGCCTCGGTTGGC
 
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rJMSF046O18-          GCCGACGATGTGGTCGGTGGCGGAAACGGTGGTGGAGGCGGCGGCGATTA          
JMFN031D05+           GCCGACGATGTGGTCGGTGGCGGAGACGGTGGTGGAGGCGGCGGCGATTAGGAGGACGAG
JMFN046H19+           GCCGACGATGTGGTCGGTGGCGGAGACGGTGGTGGAGGCGGCGGCGATTAGGAGGACGAG
JMFN025D09+           GCCGACGATGTGGTCGGTGGCGGAGACGGTGGTGGAGGCGGCGGCGATTAGGAGGACGAG
JMSF046O18+           GCCGACGATGTGGTCGGTGGCGGAGACGGTGGTGGAGGCGGCGGCGATTAGGAGGACGAG
                      ____________________________________________________________
consensus             GCCGACGATGTGGTCGGTGGCGGAGACGGTGGTGGAGGCGGCGGCGATTAGGAGGACGAG
 
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JMFN031D05+           GAGGAAGAGGAGGTGAGAGATGGAGGGTGAGGTGGACATGATTG                
JMFN046H19+           GAGGAAGAGGAGGTGAGAGATGGAGGGTGAGG                            
JMFN025D09+           GAGGAAGAGGAGGTGAGAGATGGAGGGTGAGGTGGACATGATTGAGTGGTG         
JMSF046O18+           GAGGAAGAGGAGGTGAGAGATGGAGGGTGAGGTGGACATGATTGAGTGGTGGATAGCTTC
                      ____________________________________________________________
consensus             GAGGAAGAGGAGGTGAGAGATGGAGGGTGAGGTGGACATGATTGAGTGGTGGATAGCTTC