Contig 013526:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003B24Sequence257013526 (2)ref|XP_009624625.1|5e-12PREDICTED: probable lysine--tRNA ligase, cytoplasmic [Nicotiana tomentosiformis741004383 (2)ref|XP_006445583.1|1e-80hypothetical protein CICLE_v10014735mg [Citrus clementina] ref|XP_006488943.1| P
JMSF045D19Sequence737013526 (2)ref|XP_009624625.1|1e-119PREDICTED: probable lysine--tRNA ligase, cytoplasmic [Nicotiana tomentosiformis816004383 (2)ref|XP_008222344.1|5e-85PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Prunus mume]

Alignment

This contig is upended


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JMSF045D19+                                                      CTCAGGGTTTGCAATCA
                      ____________________________________________________________
consensus                                                        CTCAGGGTTTGCAATCA
 
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JMSF045D19+           TATCTATATACCGCTGCCGGTAGCGCTTATCTACATCTGTTAGGCCATGATATTTGTCCG
                      ____________________________________________________________
consensus             TATCTATATACCGCTGCCGGTAGCGCTTATCTACATCTGTTAGGCCATGATATTTGTCCG
 
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JMSF045D19+           GCAATGGAAGTAGGGACTTTGTAAGAATTGAAAATGAATTCACACAAACTGATAGCTCCC
                      ____________________________________________________________
consensus             GCAATGGAAGTAGGGACTTTGTAAGAATTGAAAATGAATTCACACAAACTGATAGCTCCC
 
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JMSF045D19+           CTTTCTCAGTGCGTTTGATTGAACCACGAGCACCCAAGATATCTCCTATATCAACAAGTG
                      ____________________________________________________________
consensus             CTTTCTCAGTGCGTTTGATTGAACCACGAGCACCCAAGATATCTCCTATATCAACAAGTG
 
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JMSF045D19+           TCTTCAAATGGTCAAATTGATCACTGGAGAGCCTTTCCTTCTCACAGTAGAGCTGAATTG
                      ____________________________________________________________
consensus             TCTTCAAATGGTCAAATTGATCACTGGAGAGCCTTTCCTTCTCACAGTAGAGCTGAATTG
 
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JMSF045D19+           TCCCAGAGTCATCTCTCAAGGTAAAAAAGGCAAGCTTTCCAAAAGCTCTGCGAGCCACAA
                      ____________________________________________________________
consensus             TCCCAGAGTCATCTCTCAAGGTAAAAAAGGCAAGCTTTCCAAAAGCTCTGCGAGCCACAA
 
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JMSF045D19+           TTCTTCCTGATATTGAGACATAATCATTCTCATTGTTTGACTCTTCACCATTTCCTAGAT
                      ____________________________________________________________
consensus             TTCTTCCTGATATTGAGACATAATCATTCTCATTGTTTGACTCTTCACCATTTCCTAGAT
 
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JMSF045D19+           CTTTATAAATCTCTTGTAACTGATTAGCCGTATGAGTCCTATCCCACTTGTATGCGTAGG
                      ____________________________________________________________
consensus             CTTTATAAATCTCTTGTAACTGATTAGCCGTATGAGTCCTATCCCACTTGTATGCGTAGG
 
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JMSF003B24+                                          CTTCTTGATGCGGATGGCGCGAATGGCTT
JMSF045D19+           GTTCCAAGCCCTTGATTCTTAATTCTTCCACCTTCTTGATGCGGATGGCGCGAATGGCTT
                      ____________________________________________________________
consensus             GTTCCAAGCCCTTGATTCTTAATTCTTCCACCTTCTTGATGCGGATGGCGCGAATGGCTT
 
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JMSF003B24+           CTCTATCGGAGGTGGAGGTGGTAGATGAGGACCGCCGGTTACGGCCGGCGGCTCTGTCAG
JMSF045D19+           CTCTATCGGAGGTGGAGGTGGTAGATGAGGACCGCCGGTTACGGCCGGCGGCTCTGTCAG
                      ____________________________________________________________
consensus             CTCTATCGGAGGTGGAGGTGGTAGATGAGGACCGCCGGTTACGGCCGGCGGCTCTGTCAG
 
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JMSF003B24+           TGACGAAGGCGGCGGCAGAAGAAGAAGACGACGAGCAACAGCGAACAATGAAACAAGAAG
JMSF045D19+           TGACGAAGGCGGCGGCAGAAGAAGAAGACGACGAGCAACAGCGAACAATGAAACAAGAAG
                      ____________________________________________________________
consensus             TGACGAAGGCGGCGGCAGAAGAAGAAGACGACGAGCAACAGCGAACAATGAAACAAGAAG
 
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JMSF003B24+           AAGGGTTTCGAAATTGAATTGCTCGGGTAGACCTCAAAGAAGCAAAGTGGATGAGGTGCT
JMSF045D19+           AAGGGTTTCGAAATTGAATTGCTCGGGTAGACCTCAAAGAAGCAAAGTGGATGAGGTGCT
                      ____________________________________________________________
consensus             AAGGGTTTCGAAATTGAATTGCTCGGGTAGACCTCAAAGAAGCAAAGTGGATGAGGTGCT
 
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JMSF003B24+           TGAATGGGTGTAGCGCCTCCATTCTTCTTCTCTGCTTCGCACTTCACG            
JMSF045D19+           TGAATGGGTGTAGCGCCTCCATTCTTCTTCTCTGCTTCGCACTTCACGGCTAGCTCGGCC
                      ____________________________________________________________
consensus             TGAATGGGTGTAGCGCCTCCATTCTTCTTCTCTGCTTCGCACTTCACGGCTAGCTCGGCC