Contig 013522:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF043L02Sequence703013522 (2)ref|XP_010528520.1|59.3PREDICTED: uncharacterized protein LOC104805598 [Tarenaya hassleriana]809013522 (2)ref|XP_010677176.1|105PREDICTED: uncharacterized protein LOC104892855 [Beta vulgaris subsp. vulgaris]

Alignment

This contig is upended


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rJMSF043L02-                                                                 CAAAG
                      ____________________________________________________________
consensus                                                                    CAAAG
 
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rJMSF043L02-          CACACATTCATAATTAGATAACTATAATTCCATAATTGAAAAACTATAATTCCATAATTT
                      ____________________________________________________________
consensus             CACACATTCATAATTAGATAACTATAATTCCATAATTGAAAAACTATAATTCCATAATTT
 
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rJMSF043L02-          CAAAACCATAATTCCATAACTTCAAAACTACACATCCATAGGTGCATAACCACACATCCA
                      ____________________________________________________________
consensus             CAAAACCATAATTCCATAACTTCAAAACTACACATCCATAGGTGCATAACCACACATCCA
 
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rJMSF043L02-          GAATTGCATATCTACAATTACATAATTGCATAAATATAATTCCATAATTAGAACAGTTTA
                      ____________________________________________________________
consensus             GAATTGCATATCTACAATTACATAATTGCATAAATATAATTCCATAATTAGAACAGTTTA
 
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rJMSF043L02-          TGTATAATGGGATCTTACCAGGATGAATACCATTGGACCTCTAAAGGATCTTGTAGGACT
                      ____________________________________________________________
consensus             TGTATAATGGGATCTTACCAGGATGAATACCATTGGACCTCTAAAGGATCTTGTAGGACT
 
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rJMSF043L02-          GTCTTTGTAAATCTCATATGAATCAATGAAAGACCTGTACGTGTATCGGCACCAATTCAG
                      ____________________________________________________________
consensus             GTCTTTGTAAATCTCATATGAATCAATGAAAGACCTGTACGTGTATCGGCACCAATTCAG
 
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rJMSF043L02-          TCTTGAGATTGCCCGGATGTTGAGCAATGACTTGAGAACTCGGTAGTTGGCATATCTTCC
                      ____________________________________________________________
consensus             TCTTGAGATTGCCCGGATGTTGAGCAATGACTTGAGAACTCGGTAGTTGGCATATCTTCC
 
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rJMSF043L02-          AGTGTTTCCTCGGAGCAAAGAGGAAACAGCAAACACCACAAAGTCTCTTTTGAAGGCATC
                      ____________________________________________________________
consensus             AGTGTTTCCTCGGAGCAAAGAGGAAACAGCAAACACCACAAAGTCTCTTTTGAAGGCATC
 
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rJMSF043L02-          ACCATGGTCACCTCTCCTGATTATCTCATCAGGCATCTTGGTTGTTATGGGTGACCCTGA
                      ____________________________________________________________
consensus             ACCATGGTCACCTCTCCTGATTATCTCATCAGGCATCTTGGTTGTTATGGGTGACCCTGA
 
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rJMSF043L02-          CTTGACATTCCACATTTTCCTCCAGTCAGTTAGGAGCTTATTATATGCAGCCGAATTTTC
                      ____________________________________________________________
consensus             CTTGACATTCCACATTTTCCTCCAGTCAGTTAGGAGCTTATTATATGCAGCCGAATTTTC
 
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rJMSF043L02-          CTCAGACTTTCTACCCTCCTCAACATCTCTCTTTCCCCCTCTTCACCGACATGTAGAATG
JMSF043L02+                            CCTCAACATCTCTCTTTCCCCCTCTTCACCGACATGTAGAATG
                      ____________________________________________________________
consensus             CTCAGACTTTCTACCCTCCTCAACATCTCTCTTTCCCCCTCTTCACCGACATGTAGAATG
 
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rJMSF043L02-          TCACCATCCAATATAAAGTCTGACTTGAAAACATCAAACCTTTTCAGAAGATACTCAACA
JMSF043L02+           TCACCATCCAATATAAAGTCTGACTTGAAAACATCAAACCTTTTCAGAAGATACTCAACA
                      ____________________________________________________________
consensus             TCACCATCCAATATAAAGTCTGACTTGAAAACATCAAACCTTTTCAGAAGATACTCAACA
 
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rJMSF043L02-          AGTTGTGAGTAATTGCTTGAGAATTGTAGGTGTAGCAGCCCTCCAAAACCAATATCAACC
JMSF043L02+           AGTTGTGAGTAATTGCTTGAGAATTGTAGGTGTAGCAGCCCTCCAAAACCAATATCAACC
                      ____________________________________________________________
consensus             AGTTGTGAGTAATTGCTTGAGAATTGTAGGTGTAGCAGCCCTCCAAAACCAATATCAACC
 
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rJMSF043L02-          ACAGCATCCTTTTGTTCCTGTGTTAGACGTTGGACAAGCTCATACATTTGTTTGGGACCC
JMSF043L02+           ACAGCATCCTTTTGTTCCTGTGTTAGACGTTGGACAAGCTCATACATTTGTTTGGGACCC
                      ____________________________________________________________
consensus             ACAGCATCCTTTTGTTCCTGTGTTAGACGTTGGACAAGCTCATACATTTGTTTGGGACCC
 
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rJMSF043L02-          ATCCGTGTACTGAAATAATCCACG                                    
JMSF043L02+           ATCCGTGTACTGAAATAATCCACGTCAGGGTCCCGTACTTGCTCTCGCTTTGGTGGTTGT
                      ____________________________________________________________
consensus             ATCCGTGTACTGAAATAATCCACGTCAGGGTCCCGTACTTGCTCTCGCTTTGGTGGTTGT
 
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JMSF043L02+           GCCCTCTTTCTTTTCGTAGCAGCTGGTTGTTGCCTTGTAGAAGGCTCTGCAGGATCTTCT
                      ____________________________________________________________
consensus             GCCCTCTTTCTTTTCGTAGCAGCTGGTTGTTGCCTTGTAGAAGGCTCTGCAGGATCTTCT
 
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JMSF043L02+           TAGGCAGGGGTGAGCTGAGCAGCCTGTGAGCTCAATATTGCTCTGATTTTTGTCCTTTTT
                      ____________________________________________________________
consensus             TAGGCAGGGGTGAGCTGAGCAGCCTGTGAGCTCAATATTGCTCTGATTTTTGTCCTTTTT
 
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JMSF043L02+           ACCGACTTCACAAATTGCCCAAGCGTAGTGTCATCTCCCATATTTGAGTCTTCCATTTCG
                      ____________________________________________________________
consensus             ACCGACTTCACAAATTGCCCAAGCGTAGTGTCATCTCCCATATTTGAGTCTTCCATTTCG
 
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JMSF043L02+           ATCATTTCCTATGCCACTCATTCCTATTGAGAGGACTTATCCGTGAGATATTCCGATTCC
                      ____________________________________________________________
consensus             ATCATTTCCTATGCCACTCATTCCTATTGAGAGGACTTATCCGTGAGATATTCCGATTCC
 
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JMSF043L02+           ATCGCAATCTCTAATCACGATCTCATACTCTAATATGAATCCTTTAACAGAGAATACACC
                      ____________________________________________________________
consensus             ATCGCAATCTCTAATCACGATCTCATACTCTAATATGAATCCTTTAACAGAGAATACACC
 
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JMSF043L02+           ATCAACACAATCCATGGAGCGAGTTGGATTGCTTTCTAAACCGAACGAATTTTCGTGAGA
                      ____________________________________________________________
consensus             ATCAACACAATCCATGGAGCGAGTTGGATTGCTTTCTAAACCGAACGAATTTTCGTGAGA
 
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JMSF043L02+           GATTACGAAGTAAGATTGTAAGAAGGCGGCGCCGGGGCTGGAGTAGATAGAGGAAAAACC
                      ____________________________________________________________
consensus             GATTACGAAGTAAGATTGTAAGAAGGCGGCGCCGGGGCTGGAGTAGATAGAGGAAAAACC