Contig 013519:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF042F04-                AGATTATACAAACAAGCATTATTGGCAATGACTTTCATACATCTAACACATGCA
rJMSF045P08-                AGATTATACAAACAAGCATTATTGGCAATGACTTTCATACATCTAACACATGCA
                      ____________________________________________________________
consensus                   AGATTATACAAACAAGCATTATTGGCAATGACTTTCATACATCTAACACATGCA
 
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rJMSF042F04-          GTACTGCACTGGGTAGTTAGTGCTTAATTGTCCAGAGTGAGCACAATGGATCCAGATGTT
rJMSF045P08-          GTACTGCACTGGGTAGTTAGTGCTTAATTGTCCAGAGTGAGCACAATGGATCCAGATGTT
                      ____________________________________________________________
consensus             GTACTGCACTGGGTAGTTAGTGCTTAATTGTCCAGAGTGAGCACAATGGATCCAGATGTT
 
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rJMSF042F04-          TTTCTGCTCTCGAGGTCAGCGTGAGCTTGTGCTACTTGAGATAGCGGATAGGTATGATTC
rJMSF045P08-          TTTCTGCTCTCGAGGTCAGCGTGAGCTTGTGCTACTTGAGATAGCGGATAGGTATGATTC
                      ____________________________________________________________
consensus             TTTCTGCTCTCGAGGTCAGCGTGAGCTTGTGCTACTTGAGATAGCGGATAGGTATGATTC
 
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rJMSF042F04-          ATGCGTACCCTTAGCACACCTGATGCAACATTGGCAAAAACCTCCCCAGCACATTCAAGT
rJMSF045P08-          ATGCGTACCCTTAGCACACCTGATGCAACATTGGCAAAAACCTCCCCAGCACATTCAAGT
                      ____________________________________________________________
consensus             ATGCGTACCCTTAGCACACCTGATGCAACATTGGCAAAAACCTCCCCAGCACATTCAAGT
 
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rJMSF042F04-          AGTTCGTCGCGTGTGCTTGTGTAATCCATCATGGAAGGCCTAGTCAAGAACAGTGATTTT
rJMSF045P08-          AGTTCGTCGCGTGTGCTTGTGTAATCCATCATGGAAGGCCTAGTCAAGAACAGTGATTTT
                      ____________________________________________________________
consensus             AGTTCGTCGCGTGTGCTTGTGTAATCCATCATGGAAGGCCTAGTCAAGAACAGTGATTTT
 
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rJMSF042F04-          GCTGCAAGAGTAGATAAATGCGCAGGATCGGGTGTTCCAGATGACTGTCCAAAACTCACC
rJMSF045P08-          GCTGCAAGAGTAGATAAATGCGCAGGATCGGGTGTTCCAGATGACTGTCCAAAACTCACC
                      ____________________________________________________________
consensus             GCTGCAAGAGTAGATAAATGCGCAGGATCGGGTGTTCCAGATGACTGTCCAAAACTCACC
 
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rJMSF042F04-          ATGTAGCCCCGTGTTTTCAGACATTCTAATGATCCCTGAAAGGTGTCTTTCCCAACAGAA
rJMSF045P08-          ATGTAGCCCCGTGTTTTCAGACATTCTAATGATCCCTGAAAGGTGTCTTTCCCAACAGAA
                      ____________________________________________________________
consensus             ATGTAGCCCCGTGTTTTCAGACATTCTAATGATCCCTGAAAGGTGTCTTTCCCAACAGAA
 
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rJMSF042F04-          TCATAAACAACTTCCACTCCTTTTCCAGATGTGATCTCATTCACACGGGAGACAAAATCC
rJMSF045P08-          TCATAAACAACTTCCACTCCTTTTCCAGATGTGATCTCATTCACACGGGAGACAAAATCC
JMSF045P08+                                   CCAGATGTGATNTCATTCACACGGGAGACAAAATCC
                      ____________________________________________________________
consensus             TCATAAACAACTTCCACTCCTTTTCCAGATGTGATCTCATTCACACGGGAGACAAAATCC
 
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rJMSF042F04-          TCTTCCTTGTAGGATATGGTATGATGGCAACCATCTTCTTTAGCTTGGGCTGCCTTTTCT
rJMSF045P08-          TCTTCCTTGTAGGATATGGTATGATGGCAACCATCTTCTTTAGCTTGGGCTGCCTTTTCT
JMSF042F04+               CCTTGTAGGATATGGTATGATGGCAACCATCTTCTTTAGCTTGGGCTGCCTTTTCT
JMSF045P08+           TCTTCCTTGTAGGATATGGTATGATGGCAACCATCTTCTTTAGCTTGGGCTGCCTTTTCT
JMSF043F02+                  TGTAGGATATGGTATGATGGCAACCATCTTCTTTAGCTTGGGCTGCCTTTTCT
                      ____________________________________________________________
consensus             TCTTCCTTGTAGGATATGGTATGATGGCAACCATCTTCTTTAGCTTGGGCTGCCTTTTCT
 
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rJMSF042F04-          TTAGTTGAGACAGTT-CCAATGACAGTTGCACCAAGAGCATTTGCCCATTGACACAAAAG
rJMSF045P08-          TTAGTTGAGACAGTT-CCAATGACAGTTGCACCAAGAGCATTTGCCCATTGACACAAAAG
JMSF042F04+           TTAGTTGAGACAGTT-CCAATGACAGTTGCACCAAGAGCATTTGCCCATTGACACAAAAG
JMSF045P08+           TTAGTTGAGACAGTT-CCAATGACAGTTGCACCAAGAGCATTTGCCCATTGACACAAAAG
JMSF043F02+           TTAGTTGAGACAGTTNCCAATGACAGTTGCACCAAGAGCATTTGCCCATTGACACAAAAG
                      ____________________________________________________________
consensus             TTAGTTGAGACAGTT-CCAATGACAGTTGCACCAAGAGCATTTGCCCATTGACACAAAAG
 
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rJMSF042F04-          GGAGCCAACTCCACCTGCTGCAGCATGAACAAGAACCGTGTGTCCAGGCTCAACCTTGAA
rJMSF045P08-          GGAGCCAACTCCACCTGCTGCAGCATGAACAAGAACCGTGTGTCCAGGCTCAACCTTGAA
JMSF042F04+           GGAGCCAACTCCACCTGCTGCAGCATGAACAAGAACCGTGTGTCCAGGCTCAACCTTGAA
JMSF045P08+           GGAGCCAACTCCACCTGCTGCAGCATGAACAAGAACCGTGTGTCCAGGCTCAACCTTGAA
JMSF043F02+           GGAGCCAACTCCACCTGCTGCAGCATGAACAAGAACCGTGTGTCCAGGCTCAACCTTGAA
                      ____________________________________________________________
consensus             GGAGCCAACTCCACCTGCTGCAGCATGAACAAGAACCGTGTGTCCAGGCTCAACCTTGAA
 
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rJMSF042F04-          GCATCTGCGAAGTAAAAACTGAGTCGTCATTCCCTTCAAAAGTACAGATGCTACTGTAAT
rJMSF045P08-          GCATCTGCGAAGTAAAAACTGAGTCGTCATTCCCTTC-AAAGTACAGATGCTACTGTAAT
JMSF042F04+           GCATCTGCGAAGTAAAAACTGAGTCGTCATTCCCTTCAAAAGTACAGATGCTACTGTAAT
JMSF045P08+           GCATCTGCGAAGTAAAAACTGAGTCGTCATTCCCTTCAAAAGTACAGATGCTACTGTAAT
JMSF043F02+           GCATCTGCGAAGTAAAAACTGAGTCGTCATTCCCTTCAAAAGTACAGATGCTACTGTAAT
                      ____________________________________________________________
consensus             GCATCTGCGAAGTAAAAACTGAGTCGTCATTCCCTTCAAAAGTACAGATGCTACTGTAAT
 
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rJMSF042F04-          AGG                                                         
rJMSF045P08-          AGGGTCAATAGACGGAGGAACAGGCACCACTTTATCTGCAGGG                 
JMSF042F04+           AGGGTCAATAGACGGAGGAACAGGCACCACTTTATCTGCAGGGAGGATTTGTTCTTCAGC
JMSF045P08+           AGGGTCAATAGACGGAGGAACAGGCACCACTTTATCTGCAGGGAGGATTTGTTCTTCAGC
JMSF043F02+           AGGGTCAATAGACGGAGGAACAGGCACCACTTTATCTGCAGGGAGGATTTGTTCTTCAGC
                      ____________________________________________________________
consensus             AGGGTCAATAGACGGAGGAACAGGCACCACTTTATCTGCAGGGAGGATTTGTTCTTCAGC
 
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JMSF042F04+           ATATGCTCCCATTGGGCGGCCAGCATAAGCAACAACATCCCCAACTTTTCTTCCTGTTAA
JMSF045P08+           ATATGCTCCCATTGGGCGGCCAGCATAAGCAACAACATCCCCAACTTTTCTTCCTGTTAA
JMSF043F02+           ATATGCTCCCATTGGGCGGCCAGCATAAGCAACAACATCCCCAACTTTTCTTCCTGTTAA
                      ____________________________________________________________
consensus             ATATGCTCCCATTGGGCGGCCAGCATAAGCAACAACATCCCCAACTTTTCTTCCTGTTAA
 
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JMSF042F04+           TCCAGGACCAACGGCTATCACCACACCAACAGCCTCCATGCCTGGTGTAAAGGGCATGCT
JMSF045P08+           TCCAGGACCAACGGCTATCACCACACCAACAGCCTCCATGCCTGGTGTAAAGGGCATGCT
JMSF043F02+           TCCAGGACCAACGGCTATCACCACACCAACAGCCTCCATGCCTGGTGTAAAGGGCATGCT
                      ____________________________________________________________
consensus             TCCAGGACCAACGGCTATCACCACACCAACAGCCTCCATGCCTGGTGTAAAGGGCATGCT
 
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JMSF042F04+           AGCAGCCTTATAAACCCCTTTGCGGAAATATATATCAATAAAGTTAACGCCAAGTGCCTG
JMSF045P08+           AGCAGCCTTATAAACCCCTTTGCGGAAATATATATCAATAAAGTTAACGCCAAGTGCCTG
JMSF043F02+           AGCAGCCTTATAAACCCCTTTGCGGAAATATATATCAATAAAGTTAACGCCAAGTGCCTG
                      ____________________________________________________________
consensus             AGCAGCCTTATAAACCCCTTTGCGGAAATATATATCAATAAAGTTAACGCCAAGTGCCTG
 
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JMSF042F04+           ATTTTTCGCCTTGATCTCCCCTTCCTTTGGATCTCCTACTTCAACATCCTCCCACTTAAG
JMSF045P08+           ATTTTTCACCTTGATCTCCCCTTCCTTTGGATCTCCTACTTCAACATCCTCCCACTTAAG
JMSF043F02+           ATTTTTCACCTTGATCTCCCCTTCCTTTGGATCTCCTACTTCAACATCCTCCCACTTAAG
                      ____________________________________________________________
consensus             ATTTTTCACCTTGATCTCCCCTTCCTTTGGATCTCCTACTTCAACATCCTCCCACTTAAG
 
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JMSF042F04+           AACCTCAGGACCACCGAGCTCGTGAACCCTAATAGCTTTGACCATTTTGGCTGTTGTGGC
JMSF045P08+           AACCTCAGGACCACCGAGCTCGTGAACCCTAATAGCTTTGACCATTTTGGCTGTTGTGGC
JMSF043F02+           AACCTCAGGACCACCGAGCTCGTGAACCCTAATAGCTTTGACCATTTTGGCTGTTGTGGC
                      ____________________________________________________________
consensus             AACCTCAGGACCACCGAGCTCGTGAACCCTAATAGCTTTGACCATTTTGGCTGTTGTGGC
 
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JMSF042F04+           TATTGTTTCCAGCGATGTAGAGTGAGCTCTCAGTATAAGAGGAACTCTGGTCTTCTCTTT
JMSF045P08+           TATTGTTTCCAGCGATGTAGAGTGAGCTCTCAGTATAAGAGGAACTCTGGTCTTCTCTTT
JMSF043F02+           TATTGTTTCCAGCGATGTAGAGTGAGCTCTCAGTATAAGAGGAACTCTGGTCTTCTCTTT
                      ____________________________________________________________
consensus             TATTGTTTCCAGCGATGTAGAGTGAGCTCTCAGTATAAGAGGAACTCTGGTCTTCTCTTT
 
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JMSF042F04+           AGCAGCGTTTCGTAGTATACTACTTATTATAGCAGGTGCCGGAGTGACGTGGTCAACTGA
JMSF045P08+           AGCAGCGTTTCGTAGTATACTACTTATTATAGCAGGTGCCGGAGTGACGTGGTCAACTGA
JMSF043F02+           AGCAGCGTTTCGTAGTATACTACTTATTATAGCAGGTGCCGGAGTGACGTGGTCAACTGA
                      ____________________________________________________________
consensus             AGCAGCGTTTCGTAGTATACTACTTATTATAGCAGGTGCCGGAGTGACGTGGTCAACTGA
 
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JMSF042F04+           GAAATCCGGTTTGCCTAC                                          
JMSF045P08+           GAAATCCGGTTTGCCTAC                                          
JMSF043F02+           GAAATCCGGTTTGCCTACTGCGAGGAAAGAAGACCGTGGAACCTGACGGTTGCGATGGCC
                      ____________________________________________________________
consensus             GAAATCCGGTTTGCCTACTGCGAGGAAAGAAGACCGTGGAACCTGACGGTTGCGATGGCC