Contig 013516:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF041N16Sequence726013516 (4)ref|XP_009631246.1|3e-89PREDICTED: 50S ribosomal protein L17, chloroplastic [Nicotiana tomentosiformis]670013516 (4)ref|XP_009631246.1|1e-89PREDICTED: 50S ribosomal protein L17, chloroplastic [Nicotiana tomentosiformis]
JMSF042N16Sequence733013516 (4)ref|XP_009631246.1|3e-89PREDICTED: 50S ribosomal protein L17, chloroplastic [Nicotiana tomentosiformis]694013516 (4)ref|XP_009631246.1|2e-89PREDICTED: 50S ribosomal protein L17, chloroplastic [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF042N16+                                                         CGAGAGACAGAGA
rJMSF041N16+                                                         CGAGAGACAGAGA
JMSF041N16-                                                          CGAGAGACAGAGA
JMSF042N16-                                                          CGAGAGACAGAGA
                      ____________________________________________________________
consensus                                                            CGAGAGACAGAGA
 
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rJMSF042N16+          GAGCAATCGAAAATGGCGGCGTGTGCGAGCACTTCAGCNTCCGCAGCATGGAATATGGCT
rJMSF041N16+          GAGCAATCGAAAATGGCGGCGTGTGCGAGCACTTCAGCCTCCGCAGCATGGAATATGGCT
JMSF041N16-           GAGCAATCGAAAATGGCGGCGTGTGCGAGCACTTCAGCCTCCGCAGCATGGAATATGGCT
JMSF042N16-           GAGCAATCGAAAATGGCGGCGTGTGCGAGCACTTCAGCCTCCGCAGCATGGAATATGGCT
                      ____________________________________________________________
consensus             GAGCAATCGAAAATGGCGGCGTGTGCGAGCACTTCAGCCTCCGCAGCATGGAATATGGCT
 
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rJMSF042N16+          CCGCTAAGATCAGCGCTTCCTTGTATTCACGCCTCTTCCACCTCTTCCCTTCGTTTCTCA
rJMSF041N16+          CCGCTAAGATCAGCGCTTCCTTGTATTCACGCCTCTTCCACCTCTTCCCTTCGTTTCTCA
JMSF041N16-           CCGCTAAGATCAGCGCTTCCTTGTATTCACGCCTCTTCCACCTCTTCCCTTCGTTTCTCA
JMSF042N16-           CCGCTAAGATCAGCGCTTCCTTGTATTCACGCCTCTTCCACCTCTTCCCTTCGTTTCTCA
                      ____________________________________________________________
consensus             CCGCTAAGATCAGCGCTTCCTTGTATTCACGCCTCTTCCACCTCTTCCCTTCGTTTCTCA
 
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rJMSF042N16+          TCTAGGTCTTCTTCCTCTCCACTCAGGCTTTCCCGCCCCAAGTCTCAACCAGGAACTGTC
rJMSF041N16+          TCTAGGTCTTCTTCCTCTCCACTCAGGCTTTCCCGCCCCAAGTCTCAACCAGGAACTGTC
JMSF041N16-           TCTAGGTCTTCTTCCTCTCCACTCAGGCTTTCCCGCCCCAAGTCTCAACCAGGAACTGTC
JMSF042N16-           TCTAGGTCTTCTTCCTCTCCACTCAGGCTTTCCCGCCCCAAGTCTCAACCAGGAACTGTC
                      ____________________________________________________________
consensus             TCTAGGTCTTCTTCCTCTCCACTCAGGCTTTCCCGCCCCAAGTCTCAACCAGGAACTGTC
 
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rJMSF042N16+          CGCGCCTTCGTGGGCCTTGCCCCTTTCCATTCGCTCCTCTCTCATTTTTCTCCAGATTCT
rJMSF041N16+          CGCGCCTTCGTGGGCCTTGCCCCTTTCCATTCGCTCCTCTCTCATTTTTCTCCAGATTCT
JMSF041N16-           CGCGCCTTCGTGGGCCTTGCCCCTTTCCATTCGCTCCTCTCTCATTTTTCTCCAGATTCT
JMSF042N16-           CGCGCCTTCGTGGGCCTTGCCCCTTTCCATTCGCTCCTCTCTCATTTTTCTCCAGATTCT
                      ____________________________________________________________
consensus             CGCGCCTTCGTGGGCCTTGCCCCTTTCCATTCGCTCCTCTCTCATTTTTCTCCAGATTCT
 
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rJMSF042N16+          ACAAGTTTCGAGCACACTTTCACCAAGATTGGCAATGGTTGCCGATTCTTTGCCATGAGA
rJMSF041N16+          ACAAGTTTCGAGCACACTTTCACCAAGATTGGCAATGGTTGCCGATTCTTTGCCATGAGA
JMSF041N16-           ACAAGTTTCGAGCACACTTTCACCAAGATTGGCAATGGTTGCCGATTCTTTGCCATGAGA
JMSF042N16-           ACAAGTTTCGAGCACACTTTCACCAAGATTGGCAATGGTTGCCGATTCTTTGCCATGAGA
                      ____________________________________________________________
consensus             ACAAGTTTCGAGCACACTTTCACCAAGATTGGCAATGGTTGCCGATTCTTTGCCATGAGA
 
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rJMSF042N16+          CACGGCAGGAGGGTACCTAAACTGAATAGACCCCCCGACCAGCGAAAGGCGCTCTTGCGA
rJMSF041N16+          CACGGCAGGAGGGTACCTAAACTGAATAGACCCCCCGACCAGCGAAAGGCGCTCTTGCGA
JMSF041N16-           CACGGCAGGAGGGTACCTAAACTGAATAGACCCCCCGACCAGCGAAAGGCGCTCTTGCGA
JMSF042N16-           CACGGCAGGAGGGTACCTAAACTGAATAGACCCCCCGACCAGCGAAAGGCGCTCTTGCGA
                      ____________________________________________________________
consensus             CACGGCAGGAGGGTACCTAAACTGAATAGACCCCCCGACCAGCGAAAGGCGCTCTTGCGA
 
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rJMSF042N16+          GGCCTCACAACTCAGCTTCTCAAGTATGGACGCATCAAGACGACTAGAGCGAGAGCAAGG
rJMSF041N16+          GGCCTCACAACTCAGCTTCTCAAGTATGGACGCATCAAGACGACTAGAGCGAGAGCAAGG
JMSF041N16-           GGCCTCACAACTCAGCTTCTCAAGTATGGACGCATCAAGACGACTAGAGCGAGAGCAAGG
JMSF042N16-           GGCCTCACAACTCAGCTTCTCAAGTATGGACGCATCAAGACGACTAGAGCGAGAGCAAGG
                      ____________________________________________________________
consensus             GGCCTCACAACTCAGCTTCTCAAGTATGGACGCATCAAGACGACTAGAGCGAGAGCAAGG
 
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rJMSF042N16+          GCAATGAGAAAGTTTGTTGACAAAATGATCACATTGGCCAAGGAGGGCAGTCTTCACAAG
rJMSF041N16+          GCAATGAGAAAGTTTGTTGACAAAATGATCACATTGGCCAAGGAGGGCAGTCTTCACAAG
JMSF041N16-           GCAATGAGAAAGTTTGTTGACAAAATGATCACATTGGCCAAGGAGGGCAGTCTTCACAAG
JMSF042N16-           GCAATGAGAAAGTTTGTTGACAAAATGATCACATTGGCCAAGGAGGGCAGTCTTCACAAG
                      ____________________________________________________________
consensus             GCAATGAGAAAGTTTGTTGACAAAATGATCACATTGGCCAAGGAGGGCAGTCTTCACAAG
 
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rJMSF042N16+          CGAAGGCAAGCCCTCGGCTTCATCTACGAGAAGCAAATCGTGCACGCTTTATTCGCCGAG
rJMSF041N16+          CGAAGGCAAGCCCTCGGCTTCATCTACGAGAAGCAAATCGTGCACGCTTTATTCGCCGAG
JMSF041N16-           CGAAGGCAAGCCCTCGGCTTCATCTACGAGAAGCAAATCGTGCACGCTTTATTCGCCGAG
JMSF042N16-           CGAAGGCAAGCCCTCGGCTTCATCTACGAGAAGCAAATCGTGCACGCTTTATTCGCCGAG
                      ____________________________________________________________
consensus             CGAAGGCAAGCCCTCGGCTTCATCTACGAGAAGCAAATCGTGCACGCTTTATTCGCCGAG
 
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rJMSF042N16+          GTCCCAGAGAGGTACGGCGACAGAAATGGAGGGTACACCCGGATAATAAGAACGCTTCCT
rJMSF041N16+          GTCCCAGAGAGGTACGGCGACAGAAATGGAGGGTACACCCGGATAATAAGAACGCTTCCT
JMSF041N16-           GTCCCAGAGAGGTACGGCGACAGAAATGGAGGGTACACCCGGATAATAAGAACGCTTCCT
JMSF042N16-           GTCCCAGAGAGGTACGGCGACAGAAATGGAGGGTACACCCGGATAATAAGAACGCTTCCT
                      ____________________________________________________________
consensus             GTCCCAGAGAGGTACGGCGACAGAAATGGAGGGTACACCCGGATAATAAGAACGCTTCCT
 
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rJMSF042N16+          CGGCGAGGGGACAATGCACCAATGGCTTATATTGAGCTTGTCTAGTGACCAACTGTTTGA
rJMSF041N16+          CGGCGAGGGGACAATGCACCAATGGCTTATATTGAGCTTGTCTAGTGACCAACTGTT   
JMSF041N16-           CGGCGAGGGGACAATGCACCAATGGCTTATATTGAGCTTGTCTAGTGACCAACTGTTTGA
JMSF042N16-           CGGCGAGGGGACAATGCACCAATGGCTTATATTGAGCTTGTCTAGTGACCAACTGTTTGA
                      ____________________________________________________________
consensus             CGGCGAGGGGACAATGCACCAATGGCTTATATTGAGCTTGTCTAGTGACCAACTGTTTGA
 
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rJMSF042N16+          TGTTGCATTTGATTTCT                                           
JMSF041N16-           TGTTGCATTTGATTTCTTGAGTTTAATGTTAACAAGAGATTTTGTTGGGCAAA       
JMSF042N16-           TGTTGCATTTGATTTCTTGAGTTTAATGTTAACAAGAGATTTTGTTGGGCAAAAAAAAAA
                      ____________________________________________________________
consensus             TGTTGCATTTGATTTCTTGAGTTTAATGTTAACAAGAGATTTTGTTGGGCAAAAAAAAAA