Contig 013512:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038P09Sequence505013512 (3)ref|XP_006439204.1|9e-13hypothetical protein CICLE_v10023768mg [Citrus clementina] gb|ESR52444.1| hypoth715001419 (4)ref|XP_002272303.2|4e-103PREDICTED: polyadenylate-binding protein-interacting protein 11 isoform X1 [Vit
JMFF045D06Sequence611013512 (3)ref|XP_006439204.1|1e-28hypothetical protein CICLE_v10023768mg [Citrus clementina] gb|ESR52444.1| hypoth636022392ref|XP_002272303.2|3e-68PREDICTED: polyadenylate-binding protein-interacting protein 11 isoform X1 [Vit
JMSF042I11Sequence724013512 (3)ref|XP_006439204.1|2e-29hypothetical protein CICLE_v10023768mg [Citrus clementina] gb|ESR52444.1| hypoth569001419 (4)ref|XP_010660225.1|5e-79PREDICTED: polyadenylate-binding protein-interacting protein 11 isoform X2 [Vit

Alignment

This contig is upended


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JMSF042I11+                                                                   AATC
                      ____________________________________________________________
consensus                                                                     AATC
 
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JMFF045D06+            GATGATCAATGTCAGATACATAAACAGTCCTCCTGATAACATCTTCCCTCTGTGCCAAA
JMSF042I11+           TGATGATCAATGTCAGATACATAAACAGTCCTCCTGATAACATCTTCCCTCTGTGCCAAA
                      ____________________________________________________________
consensus             TGATGATCAATGTCAGATACATAAACAGTCCTCCTGATAACATCTTCCCTCTGTGCCAAA
 
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JMFF038P09+                              TTCTCTTTCCTTGAGTATAGTTATTCTTCCGCCGTCCATTG
JMFF045D06+           GTTGTCCTGCTATTCACTCTTCTCTTTCCTTGAGTATAGTTATTCTTCCGCCGTCCATTG
JMSF042I11+           GTTGTCCTGCTATTCACTCTTCTCTTTCCTTGAGTATAGTTATTCTTCCGCCGTCCATTG
                      ____________________________________________________________
consensus             GTTGTCCTGCTATTCACTCTTCTCTTTCCTTGAGTATAGTTATTCTTCCGCCGTCCATTG
 
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JMFF038P09+           GAAACACCCTTGCCGGAGTTCATGAAAAAGAGGCCGTCATTGTTAGCCAGAGAAGGAGGG
JMFF045D06+           GAAACACCCTTGCCGGAGTTCATGAAAAAGAGGCCGTCATTGTTAGCCAGAGAAGGAGGG
JMSF042I11+           GAAACACCCTTGCCGGAGTTCATGAAAAAGAGGCCGTCATTGTTAGCCAGAGAAGGAGGG
                      ____________________________________________________________
consensus             GAAACACCCTTGCCGGAGTTCATGAAAAAGAGGCCGTCATTGTTAGCCAGAGAAGGAGGG
 
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JMFF038P09+           AGAAATTCCTCAGCCATGGGATTCAGCTTAGAGAACATCTCCTCCAGCTCCCTCATGTCC
JMFF045D06+           AGAAATTCCTCAGCCATGGGATTCAGCTTAGAGAACATCTCCTCCAGCTCCCTCATGTCC
JMSF042I11+           AGAAATTCCTCAGCCATGGGATTCAGCTTAGAGAACATCTCCTCCAGCTCCCTCATGTCC
                      ____________________________________________________________
consensus             AGAAATTCCTCAGCCATGGGATTCAGCTTAGAGAACATCTCCTCCAGCTCCCTCATGTCC
 
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JMFF038P09+           CTCTTTAACCCCTCCTCCTCTCCACTATCACTGCCGTTCACTTCGACCTCTCCGCCGCTG
JMFF045D06+           CTCTTTAACCCCTCCTCCTCTCCACTATCACTGCCGTTCACTTCGACCTCTCCGCCGCTG
JMSF042I11+           CTCTTTAACCCCTCCTCCTCTCCACTATCACTGCCGTTCACTTCGACCTCTCCGCCGCTG
                      ____________________________________________________________
consensus             CTCTTTAACCCCTCCTCCTCTCCACTATCACTGCCGTTCACTTCGACCTCTCCGCCGCTG
 
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JMFF038P09+           CTGCCGTCGTTCACCAGCGGCTGATCATCCAACCGCTCCTTGTGCAGCTGGTTGTTGCTA
JMFF045D06+           CTGCCGTCGTTCACCAGCGGCTGATCATCCAACCGCTCCTTGTGCAGCTGGTTGTTGCTA
JMSF042I11+           CTGCCGTCGTTCACCAGCGGCTGATCATCCAACCGCTCCTTGTGCAGCTGGTTGTTGCTA
                      ____________________________________________________________
consensus             CTGCCGTCGTTCACCAGCGGCTGATCATCCAACCGCTCCTTGTGCAGCTGGTTGTTGCTA
 
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JMFF038P09+           TCATGCGCCTGGAAAGGATGGACCTTCATGTACAAGCCATTGGAGTCCGACATCAGATTG
JMFF045D06+           TCATGCGCCTGGAAAGGATGGACCTTCATGTACAAGCCATTGGAGTCCGACATCAGATTG
JMSF042I11+           TCATGCGCCTGGAAAGGATGGACCTTCATGTACAAGCCATTGGAGTCCGACATCAGATTG
                      ____________________________________________________________
consensus             TCATGCGCCTGGAAAGGATGGACCTTCATGTACAAGCCATTGGAGTCCGACATCAGATTG
 
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JMFF038P09+           TTACCGCCGTTACTCTTCGGCTGATCACCGTCAGCTCCTCCGCCGCCGTTAACCACCGTA
JMFF045D06+           TTACCGCCGTTACTCTTCGGCTGATCACCGTCAGCTCCTCCGCCGCCGTTAACCACCGTA
JMSF042I11+           TTACCGCCGTTACTCTTCGGCTGATCACCGTCAGCTCCTCCGCCGCCGTTAACCACCGTA
                      ____________________________________________________________
consensus             TTACCGCCGTTACTCTTCGGCTGATCACCGTCAGCTCCTCCGCCGCCGTTAACCACCGTA
 
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JMFF038P09+           TCCTGAGAAGCATTCTCCACCATTGCCATGATCAAAGGCAGGCTAAACCCTAGAGTACCC
JMFF045D06+           TCCTGAGAAGCATTCTCCACCATTGCCATGATCAAAGGCAGGCTAAACCCTAGAGTACCC
JMSF042I11+           TCCTGAGAAGCATTCTCCACCATTGCCATGATCAAAGGCAGGCTAAACCCTAGAGTACCC
                      ____________________________________________________________
consensus             TCCTGAGAAGCATTCTCCACCATTGCCATGATCAAAGGCAGGCTAAACCCTAGAGTACCC
 
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JMFF038P09+           TGAGCTTAGCTAACCCACTGCTCTCTTAACTCACTCTAGA                    
JMFF045D06+           TGAGCTTAGCTAACCCACTGCTCTCTTAACTCACTCTAGATCGACGAATTTGATCAAGCC
JMSF042I11+           TGAGCTTAGCTAACCCACTGCTCTCTTAACTCACTCTAGATCGACGAATTTGATCAAGCC
                      ____________________________________________________________
consensus             TGAGCTTAGCTAACCCACTGCTCTCTTAACTCACTCTAGATCGACGAATTTGATCAAGCC
 
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JMSF042I11+           GTTTGAAGAGAAGTTCAAAGATTCTCCATTGACACTTGACAGACAAGAAAGATAAACTCG
                      ____________________________________________________________
consensus             GTTTGAAGAGAAGTTCAAAGATTCTCCATTGACACTTGACAGACAAGAAAGATAAACTCG
 
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JMSF042I11+           AGGAGATTGATTATTGCGGAGAACCCGAAATGGTTAAACGAAACCCACCCAGGAACCCCA
                      ____________________________________________________________
consensus             AGGAGATTGATTATTGCGGAGAACCCGAAATGGTTAAACGAAACCCACCCAGGAACCCCA