Contig 013511:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN040F24Sequence603013511 (3)ref|XP_009773668.1|186PREDICTED: uncharacterized protein LOC104223855 [Nicotiana sylvestris]
JMSF042C19Sequence787013511 (3)ref|XP_009773668.1|246PREDICTED: uncharacterized protein LOC104223855 [Nicotiana sylvestris]836013511 (3)ref|XP_009773668.1|293PREDICTED: uncharacterized protein LOC104223855 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF042C19- GTAACG
                      ____________________________________________________________
consensus GTAACG
 
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rJMSF042C19- CGGTGCACGTCAAGGCTAACATGCCAACTTGCCGTGAATCTTGTGATTCATAAAGGTAAC
                      ____________________________________________________________
consensus CGGTGCACGTCAAGGCTAACATGCCAACTTGCCGTGAATCTTGTGATTCATAAAGGTAAC
 
. : . : . : . : . : . :
rJMSF042C19- ATCAATTCATTGTCTCTCTTTTGATTTAAATAAGGTAATGCACCAAGCCAACTGCCGGAA
                      ____________________________________________________________
consensus ATCAATTCATTGTCTCTCTTTTGATTTAAATAAGGTAATGCACCAAGCCAACTGCCGGAA
 
. : . : . : . : . : . :
rJMSF042C19- AATATCAACCTATCTTTCATCAATTATTTTGTGTCGGTGATTTCATTAAAGAATTAGTAT
                      ____________________________________________________________
consensus AATATCAACCTATCTTTCATCAATTATTTTGTGTCGGTGATTTCATTAAAGAATTAGTAT
 
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rJMSF042C19- CAAATCTGGATGCATGCCCCTAGTAACTCAGGCCAAGCTGTAATCCGAGGGCAAAGTGGA
                      ____________________________________________________________
consensus CAAATCTGGATGCATGCCCCTAGTAACTCAGGCCAAGCTGTAATCCGAGGGCAAAGTGGA
 
. : . : . : . : . : . :
rJMSF042C19- CAAGAAATAGTGTCATTATTCCACTCCCCAGTATGCCATGAACATTCCTCAATCCGGGGT
JMSF042C19+ CCGGGGT
                      ____________________________________________________________
consensus CAAGAAATAGTGTCATTATTCCACTCCCCAGTATGCCATGAACATTCCTCAATCCGGGGT
 
. : . : . : . : . : . :
rJMSF042C19- TTCCCTCAAAAAGTGCAGGCAAGAGTGTCTGTATGGTCAGAAGAGATAGGCCAATGAGGC
JMSF042C19+ TTCCCTCAAAAAGTGCAGGCAAGAGTGTCTGTATGGTCAGAAGAGATAGGCCAATGAGGC
                      ____________________________________________________________
consensus TTCCCTCAAAAAGTGCAGGCAAGAGTGTCTGTATGGTCAGAAGAGATAGGCCAATGAGGC
 
. : . : . : . : . : . :
rJMSF042C19- CAGTCACTGCATGAGGGCTTTCCAAGATGGGTTTGTTTGAAGTGAGCAAAGAAGTTATCC
JMFN040F24+ TTGAAGTGAGCAAAGAAGTTATCC
JMSF042C19+ CAGTCACTGCATGAGGGCTTTCCAAGATGGGTTTGTTTGAAGTGAGCAAAGAAGTTATCC
                      ____________________________________________________________
consensus CAGTCACTGCATGAGGGCTTTCCAAGATGGGTTTGTTTGAAGTGAGCAAAGAAGTTATCC
 
. : . : . : . : . : . :
rJMSF042C19- CTCCAGTAGCTCCAAGAGCAAAGAAGAAGAACATTCCAGCAAGGAGTTTGGGATGCAAAT
JMFN040F24+ CTCCAGTAGCTCCAAGAGCAAAGAAGAAGAACATTCCAGCAAGGAGTTTGGGATGCAAAT
JMSF042C19+ CTCCAGTAGCTCCAAGAGCAAAGAAGAAGAACATTCCAGCAAGGAGTTTGGGATGCAAAT
                      ____________________________________________________________
consensus CTCCAGTAGCTCCAAGAGCAAAGAAGAAGAACATTCCAGCAAGGAGTTTGGGATGCAAAT
 
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rJMSF042C19- CTTTGGCTTTTGCTTTTTCCTCCACATCATTAGAAAACCGGATTCTGAATCCCAGGTAAG
JMFN040F24+ CTTTGGCTTTTGCTTTTTCCTCCACATCATTAGAAAACCGGATTCTGAATCCCAGGTAAG
JMSF042C19+ CTTTGGCTTTTGCTTTTTCCTCCACATCATTAGAAAACCGGATTCTGAATCCCAGGTAAG
                      ____________________________________________________________
consensus CTTTGGCTTTTGCTTTTTCCTCCACATCATTAGAAAACCGGATTCTGAATCCCAGGTAAG
 
. : . : . : . : . : . :
rJMSF042C19- TTCCATAACCACCCATGGCAAAGAGCACAACAGCCATGTTGCCGGGATGGCCCCAGTGCA
JMFN040F24+ TTCCATAACCACCCATGGCAAAGAGCACAACAGCCATGTTGCCGGGATGGCCCCAGTGCA
JMSF042C19+ TTCCATAACCACCCATGGCAAAGAGCACAACAGCCATGTTGCCGGGATGGCCCCAGTGCA
                      ____________________________________________________________
consensus TTCCATAACCACCCATGGCAAAGAGCACAACAGCCATGTTGCCGGGATGGCCCCAGTGCA
 
. : . : . : . : . : . :
rJMSF042C19- CGAGCCAGTCAGGAAGGTTCAATGATTTAACGACCTCAACGAACGGTCCAAACACAGACC
JMFN040F24+ CGAGCCAGTCAGGAAGGTTCAATGATTTAACGACCTCAACGAACGGTCCAAACACAGACC
JMSF042C19+ CGAGCCAGTCAGGAAGGTTCAATGATTTAACGACCTCAACGAACGGTCCAAACACAGACC
                      ____________________________________________________________
consensus CGAGCCAGTCAGGAAGGTTCAATGATTTAACGACCTCAACGAACGGTCCAAACACAGACC
 
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rJMSF042C19- TCACAGCTCCAGCTCCTGGAAGAGCAGCCACAAACAGCAATGGCGAAGGAGTGAAGGAGT
JMFN040F24+ TCACAGCTCCAGCTCCTGGAAGAGCAGCCACAAACAGCAATGGCGAAGGAGTGAAGGAGT
JMSF042C19+ TCACAGCTCCAGCTCCTGGAAGAGCAGCCACAAACAGCAATGGCGAAGGAGTGAAGGAGT
                      ____________________________________________________________
consensus TCACAGCTCCAGCTCCTGGAAGAGCAGCCACAAACAGCAATGGCGAAGGAGTGAAGGAGT
 
. : . : . : . : . : . :
rJMSF042C19- ACAGCAGAGTCTCAGTACGAGGTTTCTCTGTCACTGCTTCATCTTCTTCGTCTTCAACTA
JMFN040F24+ ACAGCAGAGTCTCAGTACGAGGTTTCTCTGTCACTGCTTCATCTTCTTCGTCTTCAACTA
JMSF042C19+ ACAGCAGAGTCTCAGTACGAGGTTTCTCTGTCACTGCTTCATCTTCTTCGTCTTCAACTA
                      ____________________________________________________________
consensus ACAGCAGAGTCTCAGTACGAGGTTTCTCTGTCACTGCTTCATCTTCTTCGTCTTCAACTA
 
. : . : . : . : . : . :
rJMSF042C19- TTATATCAACAGCAACCTCAGAGCTACACCTATTCTTCNAAGCAAAAACA
JMFN040F24+ TTATATCAACAGCAACCTCAGAGCTACACCTATTCTTCAAAGCAAAAACAGGTGGAAAAA
JMSF042C19+ TTATATCAACAGCAACCTCAGAGCTACACCTATTCTTCAAAGCAAAAACAGGTGGAAAAA
                      ____________________________________________________________
consensus TTATATCAACAGCAACCTCAGAGCTACACCTATTCTTCAAAGCAAAAACAGGTGGAAAAA
 
. : . : . : . : . : . :
JMFN040F24+ CTGCCCTTGTTTTGGCTCCATGAATCAGTAATGGAGATTTAAAAGAATTAGAAGAGGGAA
JMSF042C19+ CTGCCCTTGTTTTGGCTCCATGAATCAGTAATGGAGATTTAAAAGAATTAGAAGAGGGAA
                      ____________________________________________________________
consensus CTGCCCTTGTTTTGGCTCCATGAATCAGTAATGGAGATTTAAAAGAATTAGAAGAGGGAA
 
. : . : . : . : . : . :
JMFN040F24+ TTCTGGGAGAAGATGAAGTTAGCCCAAGAGAAGGAAATGGGTGTTGACCTACACCAAGTA
JMSF042C19+ TTCTGGGAGAAGATGAAGTTAGCCCAAGAGAAGGAAATGGGTGTTGACCTACACCAAGTA
                      ____________________________________________________________
consensus TTCTGGGAGAAGATGAAGTTAGCCCAAGAGAAGGAAATGGGTGTTGACCTACACCAAGTA
 
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JMFN040F24+ AGGAAGCAGCATTCACCATTAAAGCCATTTTTTTTCAAG
JMSF042C19+ AGGAAGCAGCATTCACCATTAAAGCCATTTTTTTTCAAGTATTCTTGGATTATGTCTGTG
                      ____________________________________________________________
consensus AGGAAGCAGCATTCACCATTAAAGCCATTTTTTTTCAAGTATTCTTGGATTATGTCTGTG
 
. : . : . : . : . : . :
JMSF042C19+ CGCAGAGAGCTCTGGAGTTTGAAGATAGAGTGAGAAAGAAGAAGAAGAAGAGGAAAGGCC
                      ____________________________________________________________
consensus CGCAGAGAGCTCTGGAGTTTGAAGATAGAGTGAGAAAGAAGAAGAAGAAGAGGAAAGGCC