Contig 013507:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017G22Sequence475013507 (4)ref|XP_004244571.1|1e-78PREDICTED: histidine triad nucleotide-binding protein 3 [Solanum lycopersicum] 607013507 (4)ref|XP_004244571.1|2e-80PREDICTED: histidine triad nucleotide-binding protein 3 [Solanum lycopersicum]
JMSF041N06Sequence779013507 (4)ref|XP_004244571.1|4e-12PREDICTED: histidine triad nucleotide-binding protein 3 [Solanum lycopersicum] 690013507 (4)ref|XP_009627004.1|6e-54PREDICTED: histidine triad nucleotide-binding protein 3 [Nicotiana tomentosifor

Alignment

This contig is upended


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rJMSF017G22-                                                                    TT
rJMSF041N06-              CATACAGGAACTGAATCACGAATCTTGATAAGTACTTGGTTCATCTGTATCTGTTT
                      ____________________________________________________________
consensus                 CATACAGGAACTGAATCACGAATCTTGATAAGTACTTGGTTCATCTGTATCTGTTT
 
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rJMSF017G22-          TTAGCAACAATCATATTACTAAACACCTTAAAATTAAAGACTTGCACATTCTATCTAGAA
rJMSF041N06-          TTAGCAACAATCATATTACTAAACACCTTAAAATTAAAGACTTGCACATTCTATCTAGAA
                      ____________________________________________________________
consensus             TTAGCAACAATCATATTACTAAACACCTTAAAATTAAAGACTTGCACATTCTATCTAGAA
 
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rJMSF017G22-          GTACAATAACCCAGGGATGCCCAATTACATTTACATTCACAATGGGGTGAGGACTTATAG
rJMSF041N06-          GTACAATAACCCAGGGATGCCCAATTACATTTACATTCACAATGGGGTGAGGACTTATAG
                      ____________________________________________________________
consensus             GTACAATAACCCAGGGATGCCCAATTACATTTACATTCACAATGGGGTGAGGACTTATAG
 
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rJMSF017G22-          CTTTAATCTCTGCAACAATTTTTCAGCTTCAATGAATCCACCCAGTGGTCCCAAAGATGT
JMSF017G22+                     TGCAACAATTTTTCAGCTTCAATGAATCCACCCAGTGGTCCCAAAGATGT
rJMSF041N06-          CTTTAATCTCTGCAACAATTTTTCAGCTTCAATGAATCCACCCAGTGGTCCCAAAGATGT
                      ____________________________________________________________
consensus             CTTTAATCTCTGCAACAATTTTTCAGCTTCAATGAATCCACCCAGTGGTCCCAAAGATGT
 
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rJMSF017G22-          GTATTTTATACATCTCCAGCTGGGAGTGTAAGGAAGCGCTAAACAATGAAGGTGAAGGTG
JMSF017G22+           GTATTTTATACATCTCCAGCTGGGAGTGTAAGGAAGCGCTAAACAATGAAGGTGAAGGTG
rJMSF041N06-          GTATTTTATACATCTCCAGCTGGGAGTGTAAGGAAGCGCTAAACAATGAAGGTGAAGGTG
                      ____________________________________________________________
consensus             GTATTTTATACATCTCCAGCTGGGAGTGTAAGGAAGCGCTAAACAATGAAGGTGAAGGTG
 
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rJMSF017G22-          ATTAACACTGTTCAATGGAGGCTGATGAAAACCAAATCTGTATTGCTTGCTCTGAGGTGC
JMSF017G22+           ATTAACACTGTTCAATGGAGGCTGATGAAAACCAAATCTGTATTGCTTGCTCTGAGGTGC
rJMSF041N06-          ATTAACACTGTTCAATGGAGGCTGATGAAAACCAAATCTGTATTGCTTGCTCTGAGGTGC
                      ____________________________________________________________
consensus             ATTAACACTGTTCAATGGAGGCTGATGAAAACCAAATCTGTATTGCTTGCTCTGAGGTGC
 
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rJMSF017G22-          ATCTCTCCGTAACAGACTCTTCCCGACATCTAACATGTGACTCACTAAAGTGTAGTCGTC
JMSF017G22+           ATCTCTCCGTAACAGACTCTTCCCGACATCTAACATGTGACTCACTAAAGTGTAGTCGTC
rJMSF041N06-          ATCTCTCCGTAACAGACTCTTCCCGACATCTAACATGTGACTCACTAAAGTGTAGTCGTC
                      ____________________________________________________________
consensus             ATCTCTCCGTAACAGACTCTTCCCGACATCTAACATGTGACTCACTAAAGTGTAGTCGTC
 
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rJMSF017G22-          TTGTCTTTTTTGGAGATCTTTAACTGTAGGAATGTGCTCTTTTGAAATTACCAAGTAATG
JMSF017G22+           TTGTCTTTTTTGGAGATCTTTAACTGTAGGAATGTGCTCTTTTGAAATTACCAAGTAATG
rJMSF041N06-          TTGTCTTTTTTGGAGATCTTTAACTGTAGGAATGTGCTCTTTTGAAATTACCAAGTAATG
                      ____________________________________________________________
consensus             TTGTCTTTTTTGGAGATCTTTAACTGTAGGAATGTGCTCTTTTGAAATTACCAAGTAATG
 
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rJMSF017G22-          CCTG                                                        
JMSF017G22+           CCTG                                                        
rJMSF041N06-          CCTGTCATAATTTCCAATTCCAATATGACTGATTATTAGAAAATTTCAACAGCAAGCTTT
                      ____________________________________________________________
consensus             CCTGTCATAATTTCCAATTCCAATATGACTGATTATTAGAAAATTTCAACAGCAAGCTTT
 
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rJMSF041N06-          GAAAATCTCAATTATACATGAAACTTTTTAAACAGCCTGAGAAATTAATAAATAATCATT
                      ____________________________________________________________
consensus             GAAAATCTCAATTATACATGAAACTTTTTAAACAGCCTGAGAAATTAATAAATAATCATT
 
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rJMSF041N06-          TGTGGAAAGTGATTTAAACTTGAAACATATATTTTATCCATCATTCAACCTTCAAAAA  
JMSF041N06+                 AAGTGATTTAAACTTGAAACATATATTTTATCCATCATTCAACCTTCAAAAAAT
                      ____________________________________________________________
consensus             TGTGGAAAGTGATTTAAACTTGAAACATATATTTTATCCATCATTCAACCTTCAAAAAAT
 
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JMSF041N06+           AGAAATCAAAAATAAAATATATGTAATGGTAATAATAACAACAATAATAAAGATGTAATA
                      ____________________________________________________________
consensus             AGAAATCAAAAATAAAATATATGTAATGGTAATAATAACAACAATAATAAAGATGTAATA
 
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JMSF041N06+           GGTAGAAGAAGATCATAAACTCCCCAACTGATCATAAAGCAATCAAAGATGAGCTGCTCT
                      ____________________________________________________________
consensus             GGTAGAAGAAGATCATAAACTCCCCAACTGATCATAAAGCAATCAAAGATGAGCTGCTCT
 
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JMSF041N06+           CATGTAAAAGATATCACCCTCAGAATCATTTATCCAGTGAGTTTAGCACTTTAGCCACAA
                      ____________________________________________________________
consensus             CATGTAAAAGATATCACCCTCAGAATCATTTATCCAGTGAGTTTAGCACTTTAGCCACAA
 
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JMSF041N06+           TGAAGAATGTTGCCTGGATCAATAGCCACCATAGACCATATATGAAGAATACACTTTCTT
                      ____________________________________________________________
consensus             TGAAGAATGTTGCCTGGATCAATAGCCACCATAGACCATATATGAAGAATACACTTTCTT
 
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JMSF041N06+           CTCTAATGCTTCAATGCATTAGAGAAGTCTCGCTACAGGGACACAGGCAGTATAAGAATT
                      ____________________________________________________________
consensus             CTCTAATGCTTCAATGCATTAGAGAAGTCTCGCTACAGGGACACAGGCAGTATAAGAATT
 
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JMSF041N06+           CCTAGCTATCACACATGAAATCCCATCATGATCACTAAAACGCTTCATATCAATCGTAAG
                      ____________________________________________________________
consensus             CCTAGCTATCACACATGAAATCCCATCATGATCACTAAAACGCTTCATATCAATCGTAAG
 
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JMSF041N06+           TTAATTCTATCTAGCAATTACTGTATAGCTAATATGAATCTGAATAAATTATCTGATCCT
                      ____________________________________________________________
consensus             TTAATTCTATCTAGCAATTACTGTATAGCTAATATGAATCTGAATAAATTATCTGATCCT
 
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JMSF041N06+           CTATCAACGTCAAAATTAGGTCATTAAACCCAAGTGGTCGAACAGTTGGAAGACAAAATT
                      ____________________________________________________________
consensus             CTATCAACGTCAAAATTAGGTCATTAAACCCAAGTGGTCGAACAGTTGGAAGACAAAATT
 
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JMSF041N06+           AGCTAGAACCGAGTGACTAATTAATTCGCATTTCAAATTGAAATTGAAGAGATGAAATGA
                      ____________________________________________________________
consensus             AGCTAGAACCGAGTGACTAATTAATTCGCATTTCAAATTGAAATTGAAGAGATGAAATGA
 
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JMSF041N06+           GAACCTGAGGGCTGAAGGGTTGATATCCTGAAATGCTACAACTTTTTCATCGTAGTGAAG
                      ____________________________________________________________
consensus             GAACCTGAGGGCTGAAGGGTTGATATCCTGAAATGCTACAACTTTTTCATCGTAGTGAAG
 
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JMSF041N06+           AAGAGTGGTGGAGGTGGAAGAGGTAGCGATCTGGCAGAATATGCATCCCGTTACTCCAGC
                      ____________________________________________________________
consensus             AAGAGTGGTGGAGGTGGAAGAGGTAGCGATCTGGCAGAATATGCATCCCGTTACTCCAGC
 
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JMSF041N06+           CGCCATTGCCCCGCCGCTCTCAGTCGCCGGAACTGCCCGGAGAATACACGCGGGTCGCTC
                      ____________________________________________________________
consensus             CGCCATTGCCCCGCCGCTCTCAGTCGCCGGAACTGCCCGGAGAATACACGCGGGTCGCTC