Contig 013506:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS047F10Sequence642013506 (6)
JMFS060B08Sequence632013506 (6)
JMFS114G05Sequence549013506 (6)
JMFS141C05Sequence622013506 (6)emb|CBI29847.3|1e-05unnamed protein product [Vitis vinifera]
JMFS154G12Sequence626013506 (6)
JMSF041G14Sequence533013506 (6)609002955 (2)ref|XP_011075242.1|9e-67PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820

Alignment

This contig is upended


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JMFS141C05+                                  AGCTGCATCCAATCCCATGCCAAGAACAGAAATCTGA
                      ____________________________________________________________
consensus                                    AGCTGCATCCAATCCCATGCCAAGAACAGAAATCTGA
 
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JMFS114G05+              GTTTGAGCCCAACCCTGATACCCCTAGCTCTTTTCCAATGGCTACCAGTATAGTCTG
JMFS141C05+           GGTGTTTGAGCCCCACCCTGATACCCCTAGCTCTTTTCCAATGGCTACCAGTATAGTCTG
                      ____________________________________________________________
consensus             GGTGTTTGAGCCCCACCCTGATACCCCTAGCTCTTTTCCAATGGCTACCAGTATAGTCTG
 
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JMFS114G05+           TTCTTGCACAGCTTCACCACTTGTCACCAACCCCACTACCAAAACACTCAACAAGCTCAA
JMFS141C05+           TTCTTGCACAGCTTCACCACTTGTCACCAACCCCACTACCAAAACACTCAACAAGCTCAA
JMFS047F10+                                   CACCAACCCCACTACCAAAACACTCAACAAGCTCAA
                      ____________________________________________________________
consensus             TTCTTGCACAGCTTCACCACTTGTCACCAACCCCACTACCAAAACACTCAACAAGCTCAA
 
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JMFS114G05+           AAATCCCATTTTTAGGTCACTTTCAAGAACCCTCACTCTTCTCATATTTCTTCTCCTCCT
JMFS141C05+           AAATCCCATTTTTAGGTCACTTTCAAGAACCCTCACTCTTCTCATATTTCTTCTCCTCCT
JMFS047F10+           AAATCCCATTTTTAGGTCACTTTCAAGAACCCTCACTCTTCTCATATTTCTTCTCCTCCT
JMFS060B08+             ATCCCATTTTTAGGTCACTTTCAAGAACCCTCACTCTTCTCATATTTCTTCTCCTCCT
JMFS154G12+                         GGTCACTTTCAAGAACCCTCACTCTTCTCATATTTCTTCTCCTCCT
                      ____________________________________________________________
consensus             AAATCCCATTTTTAGGTCACTTTCAAGAACCCTCACTCTTCTCATATTTCTTCTCCTCCT
 
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JMFS114G05+           CCCCAAATTCCCCCAAATAGAAACACCCAAAGGTACATAAATCAAGAATGTGCAAGACCA
JMFS141C05+           CCCCAAATTCCCCCAAATAGAAACACCCAAAGGTACATAAATCAAGAATGTGCAAGACCA
JMFS047F10+           CCCCAAATTCCCCCAAATAGAAACACCCAAAGGTACATAAATCAAGAATGTGCAAGACCA
JMFS060B08+           CCCCAAATTCCCCCAAATAGAAACACCCAAAGGTACATAAATCAAGAATGTGCAAGACCA
JMFS154G12+           CCCCAAATTCCCCCAAATAGAAACACCCAAAGGTACATAAATCAAGAATGTGCAAGACCA
                      ____________________________________________________________
consensus             CCCCAAATTCCCCCAAATAGAAACACCCAAAGGTACATAAATCAAGAATGTGCAAGACCA
 
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JMFS114G05+           CCCAATTTTCTTCTCTTCCTTCTTCAACAGAAACAAGGAAAATGGACCAGAGACCAAAAA
JMFS141C05+           CCCAATTTTCTTCTCTTCCTTCTTCAACAGAAACAAGGAAAATGGACCAGAGACCAAAAA
JMFS047F10+           CCCAATTTTCTTCTCTTCCTTCTTCAACAGAAACAAGGAAAATGGACCAGAGACCAAAAA
JMFS060B08+           CCCAATTTTCTTCTCTTCCTTCTTCAACAGAAACAAGGAAAATGGACCAGAGACCAAAAA
JMFS154G12+           CCCAATTTTCTTCTCTTCCTTCTTCAACAGAAACAAGGAAAATGGACCAGAGACCAAAAA
JMSF041G14+                          TTCCTTNTTCAACNGAAACAAGGAAAATGGACCNGAGACCAAAAA
                      ____________________________________________________________
consensus             CCCAATTTTCTTCTCTTCCTTCTTCAACAGAAACAAGGAAAATGGACCAGAGACCAAAAA
 
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JMFS114G05+           GACACTTTTTTTGGGGGCAATGGATATTCAAGAACAATGTGAGATTTGGGGGTTACAAAA
JMFS141C05+           GACACTTTTTTTGGGGGCAATGGATATTCAAGAACAATGTGAGATTTGGGGGTTACAAAA
JMFS047F10+           GACACTTTTTTTGGGGGCAATGGATATTCAAGAACAATGTGAGATTTGGGGGTTACAAAA
JMFS060B08+           GACACTTTTTTTGGGGGCAATGGATATTCAAGAACAATGTGAGATTTGGGGGTTACAAAA
JMFS154G12+           GACACTTTTTTTGGGGGCAATGGATATTCAAGAACAATGTGAGATTTGGGGGTTACAAAA
JMSF041G14+           GACNCTTTTTTTGGGGGCAATGGATNTTCAAGAACAATGTGAGATTTGGGGGTTACAAAA
                      ____________________________________________________________
consensus             GACACTTTTTTTGGGGGCAATGGATATTCAAGAACAATGTGAGATTTGGGGGTTACAAAA
 
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JMFS114G05+           TAAAGAAATATCTGAGTAGTAACCGATAGAATGATGAAAAAGAGTGGTACCGAGAGCGCC
JMFS141C05+           TAAAGAAATATCTGAGTAGTAACCGATAGAATGATGAAAAAGAGTGGTACCGAGAGCGCC
JMFS047F10+           TAAAGAAATATCTGAGTAGTAACCGATAGAATGATGAAAAAGAGTGGTACCGAGAGCGCC
JMFS060B08+           TAAAGAAATATCTGAGTAGTAACCGATAGAATGATGAAAAAGAGTGGTACCGAGAGCGCC
JMFS154G12+           TAAAGAAATATCTGAGTAGTAACCGATAGAATGATGAAAAAGAGTGGTACCGAGAGCGCC
JMSF041G14+           TAAAGAAATNTNTGAGTNGTAACCGATAGAATGATGAAAAAGAGTGGTACCGAGAGCGCC
                      ____________________________________________________________
consensus             TAAAGAAATATCTGAGTAGTAACCGATAGAATGATGAAAAAGAGTGGTACCGAGAGCGCC
 
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JMFS114G05+           AAAAACAAAACACTAGCAAAGAGAAACCAACCCAGAAAACCCGGTGCAGAGATTAAGGAT
JMFS141C05+           AAAAACAAAACACTAGCAAAGAGAAACCAACCCAGAAAACCCGGTGCAGAGATTAAGGAT
JMFS047F10+           AAAAACAAAACACTAGCAAAGAGAAACCAACCCAGAAAACCCGGTGCAGAGATTAAGGAT
JMFS060B08+           AAAAACAAAACACTAGCAAAGAGAAACCAACCCAGAAAACCCGGTGCAGAGATTAAGGAT
JMFS154G12+           AAAAACAAAACACTAGCAAAGAGAAACCAACCCAGAAAACCCGGTGCAGAGATTAAGGAT
JMSF041G14+           AAAAACAAAACNCCAGCAAAGNGAAACCAACCCNGAAAACCCGGTGCAGAGATTAAGGAT
                      ____________________________________________________________
consensus             AAAAACAAAACACTAGCAAAGAGAAACCAACCCAGAAAACCCGGTGCAGAGATTAAGGAT
 
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JMFS114G05+           AAAACGGATTATGATAACATGAAGATGAGCAGAAGCACGAGTGCATGACCATGAACAGGA
JMFS141C05+           AAAACGGATTATGATAACATGAAGATGAGCAGAAGCACGAGTGCATGACCATGAACAGGA
JMFS047F10+           AAAACGGATTATGATAACATGAAGATGAGCAGAAGCACGAGTGCATGACCATGAACAGGA
JMFS060B08+           AAAACGGATTATGATAACATGAAGATGAGCAGAAGCACGAGTGCATGACCATGAACAGGA
JMFS154G12+           AAAACGGATTATGATAACATGAAGATGAGCAGAAGCACGAGTGCATGACCATGAACAGGA
JMSF041G14+           AAAACGGATTNTGATAACNTGAAGATGAGCNGAAGCNCGAGTGCATGACCNTGAACNGGA
                      ____________________________________________________________
consensus             AAAACGGATTATGATAACATGAAGATGAGCAGAAGCACGAGTGCATGACCATGAACAGGA
 
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JMFS114G05+           AGTTCTGCAGAG                                                
JMFS141C05+           AGTTCTGCAGAGAAAAAAAAAATCTAAAACAATAATTTAATGTTG               
JMFS047F10+           AGTTCTGCAGAGAAAAAAAAAATCTAAAACAATAATTTAATGTTGCAGGGGAAAAAGAAC
JMFS060B08+           AGTTCTGCAGAGAAAAAAAAAATCTAAAACAATAATTTAATGTTGCAGGGGAAAAAGAAC
JMFS154G12+           AGTTCTGCAGAGAAAAAAAAAATCTAAAACAATAATTTAATGTTGCAGGGGAAAAAGAAC
JMSF041G14+           AGTTNTGCAGAGAAAAAAAAAATCTAAAACAATAATTTAATGTTGCAGGGGAAAAAGAAC
                      ____________________________________________________________
consensus             AGTTCTGCAGAGAAAAAAAAAATCTAAAACAATAATTTAATGTTGCAGGGGAAAAAGAAC
 
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JMFS047F10+           AATGGAATGTAGCAGTTTCTTGGAACAAACATGAGTGACGAAACAAGGGGGGAGGGGAAA
JMFS060B08+           AATGGAATGTAGCAGTTTCTTGGAACAAACATGAGTGACGAAACAAGGGGGGAGGGGAAA
JMFS154G12+           AATGGAATGTAGCAGTTTCTTGGAACAAACATGAGTGACGAAACAAGGGGGGAGGGGAAA
JMSF041G14+           AATGGAATGTAGCAGTTTCTTGGAACAAACATGAGTGACGAAACAAGGGGGGAGGGGAAA
                      ____________________________________________________________
consensus             AATGGAATGTAGCAGTTTCTTGGAACAAACATGAGTGACGAAACAAGGGGGGAGGGGAAA
 
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JMFS047F10+           TGGGTACAATGTTGTTGTTTGGGCAAACTGCTTTCACGGGTCAGGTGTTTTCCCTCTCTG
JMFS060B08+           TGGGTACAATGTTGTTGTTTGGGCAAACTGCTTTCACGGGTCAGGTGTTTTCCCTCTCTG
JMFS154G12+           TGGGTACAATGTTGTTGTTTGGGCAAACTGCTTTCACGGGTCAGGTGTTTTCCCTCTCTG
JMSF041G14+           TGGGTACAATGTTGTTGTTTGGGCAAACTGCTTTCACGGGTCAGGTGTTTTCCCTCTCTG
                      ____________________________________________________________
consensus             TGGGTACAATGTTGTTGTTTGGGCAAACTGCTTTCACGGGTCAGGTGTTTTCCCTCTCTG
 
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JMFS047F10+           TCCTAG                                                      
JMFS060B08+           TCCTAGAGCGAGAAAGAGAATGAGAGAGAGAAAG                          
JMFS154G12+           TCCTAGAGCGAGAAAGAGAATGAGAGAGAGAAAG                          
JMSF041G14+           TCCTAGAGCGAGAAAGAGAATGAGAGAGAGAAAGAGAGGGGATAATGGCAGTACACGCCC
                      ____________________________________________________________
consensus             TCCTAGAGCGAGAAAGAGAATGAGAGAGAGAAAGAGAGGGGATAATGGCAGTACACGCCC