| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027D19 | Sequence | 527 | 013504 (4) | gb|KHG29061.1| | 6e-20 | Putative copper-transporting ATPase PAA1 -like protein [Gossypium arboreum] | 723 | 013504 (4) | ref|XP_008348820.1| | 3e-31 | PREDICTED: copper-transporting ATPase PAA1, chloroplastic-like isoform X2 [Malu |
| JMSF040P02 | Sequence | 685 | 013504 (4) | ref|XP_009337886.1| | 1e-25 | PREDICTED: copper-transporting ATPase PAA1, chloroplastic-like isoform X2 [Pyru | 847 | 013504 (4) | ref|XP_008348820.1| | 2e-34 | PREDICTED: copper-transporting ATPase PAA1, chloroplastic-like isoform X2 [Malu |
This contig is upended
. : . : . : . : . : . :
rJMSF040P02- CTTCTTGCACCTTTTTCATGATGATCCTTTTGCCAGGTAAG
____________________________________________________________
consensus CTTCTTGCACCTTTTTCATGATGATCCTTTTGCCAGGTAAG
. : . : . : . : . : . :
rJMSF040P02- AGGGAACTTACAAGACCATTGCTGTTTCAGAAGCATTTTTTCAGATACAAAACTAAAAGA
____________________________________________________________
consensus AGGGAACTTACAAGACCATTGCTGTTTCAGAAGCATTTTTTCAGATACAAAACTAAAAGA
. : . : . : . : . : . :
rJMSF040P02- GCAACATTTAATTAATAGGCACATCTGGATTTCTATAACTGAGTGGCAAATGTGTCTTAG
rJMFF027D19- AATGTGTCTTAG
____________________________________________________________
consensus GCAACATTTAATTAATAGGCACATCTGGATTTCTATAACTGAGTGGCAAATGTGTCTTAG
. : . : . : . : . : . :
rJMSF040P02- GATTTTATGATTCAACAGGGGGGCTCAGCCCTCAGATCCCAATTGATAATACTATGTTCT
rJMFF027D19- GATTTTATGATTCAACAGGGGGGCTCAGCCCTCAGATCCCAATTGATAATACTATGTTCT
____________________________________________________________
consensus GATTTTATGATTCAACAGGGGGGCTCAGCCCTCAGATCCCAATTGATAATACTATGTTCT
. : . : . : . : . : . :
rJMSF040P02- CACATGATGCAGATGGCTTCTTCAATAATTCACCACTAGCCGCAGTTCACCATGATGGAA
rJMFF027D19- CACATGATGCAGATGGCTTCTTCAATAATTCACCACTAGCCGCAGTTCACCATGATGGAA
JMSF040P02+ CTAGCCGCAGTTCACCATGATGGAA
____________________________________________________________
consensus CACATGATGCAGATGGCTTCTTCAATAATTCACCACTAGCCGCAGTTCACCATGATGGAA
. : . : . : . : . : . :
rJMSF040P02- GATGGTTGCTTATTGTGAGAAATTCTCCGCCTTCATGATGGAATTTATCCTTCAGTAGGA
rJMFF027D19- GATGGTTGCTTATTGTGAGAAATTCTCCGCCTTCATGATGGAATTTATCCTTCAGTAGGA
JMSF040P02+ GATGGTTGCTTATTGTGAGAAATTCTCCGCCTTCATGATGGAATTTATCCTTCAGTAGGA
____________________________________________________________
consensus GATGGTTGCTTATTGTGAGAAATTCTCCGCCTTCATGATGGAATTTATCCTTCAGTAGGA
. : . : . : . : . : . :
rJMSF040P02- GCTCCCTGACCTTGGAAATCAGATTTGAATCCACAACTAGTCAAATGCTTTGCAAGTTCC
rJMFF027D19- GCTCCCTGACCTTGGAAATCAGATTTGAATCCACAACTAGTCAAATGCTTTGCAAGTTCC
JMSF040P02+ GCTCCCTGACCTTGGAAATCAGATTTGAATCCACAACTAGTCAAATGCTTTGCAAGTTCC
____________________________________________________________
consensus GCTCCCTGACCTTGGAAATCAGATTTGAATCCACAACTAGTCAAATGCTTTGCAAGTTCC
. : . : . : . : . : . :
rJMSF040P02- TCTCCTAATTGCTTTTGCCAGCCTGCCACAGCCTTGGCTTCAGATACAGGCAATATGGTT
rJMFF027D19- TCTCCTAATTGCTTTTGCCAGCCTGCCACAGCCTTGGCTTCAGATACAGGCAATATGGTT
JMFF027D19+ TAATTGCTTTTGCCAGCCTGCCACAGCCTTGGCTTCAGATACAGGCAATATGGTT
JMSF040P02+ TCTCCTAATTGCTTTTGCCAGCCTGCCACAGCCTTGGCTTCAGATACAGGCAATATGGTT
____________________________________________________________
consensus TCTCCTAATTGCTTTTGCCAGCCTGCCACAGCCTTGGCTTCAGATACAGGCAATATGGTT
. : . : . : . : . : . :
rJMSF040P02- GCTGTCCCCGTTGTAAGATCAACAGTAGCTGAAGAAACCTGTGGTTGATTTTCTAAAATC
rJMFF027D19- GCTGTCCCCGTTGTAAGATCAACAGTAGCTGAAGAAAC------TTGATTTTCTAAAATC
JMFF027D19+ GCTGTCCCCGTTGTAAGATCAACAGTAGCTGAAGAAAC------TTGATTTTCTAAAATC
JMSF040P02+ GCTGTCCCCGTTGTAAGATCAACAGTAGCTGAAGAAACCTGTGGTTGATTTTCTAAAATC
____________________________________________________________
consensus GCTGTCCCCGTTGTAAGATCAACAGTAGCTGAAGAAACCTGTGGTTGATTTTCTAAAATC
. : . : . : . : . : . :
rJMSF040P02- TTCTTCACGCTGGAGGTGCAACCCCCA-CACATCATCCCATCAACGTGAAGAACAATGAC
rJMFF027D19- TTCTTCACGCTGGAGGTGCAACCCCCA-CACATCATCCCATCAACGTGAAGAACAATGAC
JMFF027D19+ TTCTTCACGCTGGAGGTGCAACCCCCA-CACATNATCCCATCAACGTGAAGAACAATGAC
JMSF040P02+ TTCTTCACGCTGGAGGTGCAACCCCCACCACATCATCCCATCAACGTGAAGAACAATGAC
____________________________________________________________
consensus TTCTTCACGCTGGAGGTGCAACCCCCA-CACATCATCCCATCAACGTGAAGAACAATGAC
. : . : . : . : . : . :
rJMSF040P02- ATCAGCGGATACATCATCACTAACTCCCCCTCCTGTGGCAGAGCTGGAGACAATTCGCCG
rJMFF027D19- ATCAGCGGATACATCATCACTAACTCCCCCTCCTGTGGCAGAGCTGGAGACAATTCGCCG
JMFF027D19+ ATCAGCGGATACATCATCACTAACTCCCCCTCCTGTGGCAGAGCTGGAGACAATTCGCCG
JMSF040P02+ ATCAGCGGATACATCATCACTAACTCCCCCTCCTGTGGCAGAGCTGGAGACAATTCGCCG
____________________________________________________________
consensus ATCAGCGGATACATCATCACTAACTCCCCCTCCTGTGGCAGAGCTGGAGACAATTCGCCG
. : . : . : . : . : . :
rJMSF040P02- CGGCTCCTTCCGAACCGGCTGCCAGCAGAGCGCTCCCGAGTTACCGGTACTAGAAACCGA
rJMFF027D19- CGGCTCCTTCCGAACCGGCTGCCAGCAGAGCGCTCCCGAGTTACCGGTACTAGAAACCGA
JMFF027D19+ CGGCTCCTTCCGAACCGGCTGCCAGCAGAGCGCTCCCGAGTTACCGGTACTAGAAACCGA
JMSF040P02+ CGGCTCCTTCCGAACCGGCTGCCAGCAGAGCGCTCCCGAGTTACCGGTACTAGAAACCGA
____________________________________________________________
consensus CGGCTCCTTCCGAACCGGCTGCCAGCAGAGCGCTCCCGAGTTACCGGTACTAGAAACCGA
. : . : . : . : . : . :
rJMSF040P02- GCCGAGGCGGGTCAGATCCCCGAATTCTCTCCGGAGCCTGGCCCGAGCGAGTCGACGGGG
rJMFF027D19- GCCGAGGCGGGTCAGATCCCCGAATTCTCTCCGGAGCCTGGCCCGAGCGAGTCGACGGGG
JMFF027D19+ GCCGAGGCGGGTCAGATCCCCGAATTCTCTCCGGAGCCTGGCCCGAGCGAGTCGACGGGG
JMSF040P02+ GCCGAGGCGGGTCAGATCCCCGAATTCTCTCCGGAGCCTGGCCCGAGCGAGTCGACGGGG
____________________________________________________________
consensus GCCGAGGCGGGTCAGATCCCCGAATTCTCTCCGGAGCCTGGCCCGAGCGAGTCGACGGGG
. : . : . : . : . : . :
rJMSF040P02- TAAAACAATGTGAATAGACGAAGGAGCGAAGGAACGGCACTGG
rJMFF027D19- TAAAACAATGTGAATAGACGAAGGAGCGAAGGAACGGCACTGGAAGTGAGAAATGAAAGA
JMFF027D19+ TAAAACAATGTGAATAGACGAAGGAGCGAAGGAACGGCACTGGAAGTGAGAAATGAAAGA
JMSF040P02+ TAAAACAATGTGAATAGACGAAGGAGCGAAGGAACGGCACTGGAAGTGAGAAATGAAAGA
____________________________________________________________
consensus TAAAACAATGTGAATAGACGAAGGAGCGAAGGAACGGCACTGGAAGTGAGAAATGAAAGA
. : . : . : . : . : . :
rJMFF027D19- GGTGGTGTTTATGGATTTGGGTAGTGTAAGGAGAGAGTTTGCTGTGGAAGCTGCTAAC
JMFF027D19+ GGTGGTGTTTATGGATTTGGGTAGTGTAAGGAGAGAGTTTGCTGTGGAAGCTGCTAACAA
JMSF040P02+ GGTGGTGTTTATGGATTTGGGTAGTGTAAGGAGAGAGTTTGCTGTGGAAGCTGCTAACAA
____________________________________________________________
consensus GGTGGTGTTTATGGATTTGGGTAGTGTAAGGAGAGAGTTTGCTGTGGAAGCTGCTAACAA
. : . : . : . : . : . :
JMFF027D19+ GGTTGACTCCATTGTAGAGCAAGAAAACACGATTACACGAATCCTATTGCTGAAGCAGT
JMSF040P02+ GGTTGACTCCATTGTAGAGCAAGAAAACACGATTACACGAATCCTATTGCTGAAGCAGTC
____________________________________________________________
consensus GGTTGACTCCATTGTAGAGCAAGAAAACACGATTACACGAATCCTATTGCTGAAGCAGTC