Contig 013502:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS020G10Sequence594013502 (5)ref|XP_009592895.1|4e-45PREDICTED: U-box domain-containing protein 4-like isoform X2 [Nicotiana tomento
JMFS044D08Sequence627013502 (5)ref|XP_007047436.1|8e-21RING/U-box superfamily protein with ARM repeat domain isoform 1 [Theobroma caca
JMFS098C08Sequence627013502 (5)ref|XP_010314681.1|3e-51PREDICTED: U-box domain-containing protein 4-like [Solanum lycopersicum] ref|XP_
JMFS112A07Sequence627013502 (5)ref|XP_010314681.1|1e-49PREDICTED: U-box domain-containing protein 4-like [Solanum lycopersicum] ref|XP_
JMSF040G16Sequence577013502 (5)gb|KHG09481.1|2e-11U-box domain-containing 4 -like protein [Gossypium arboreum]728012716 (3)gb|KDO79033.1|1e-102hypothetical protein CISIN_1g003348mg [Citrus sinensis]

Alignment

This contig is upended


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JMFS098C08+                                                            GATAACAATTC
                      ____________________________________________________________
consensus                                                              GATAACAATTC
 
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JMFS098C08+           ATTATCAATTGACTTGATTTTCAGTATACATTGCTCAAGAGATGTCAAGCTTGCTTCAGC
JMFS112A07+               TCAATTGACTTGATTTTCAGTATACATTGCTCAAGAGATGTCAAGCTTGCTTCAGC
JMFS020G10+                                                  AGATGTCAAGCTTGCTTCAGC
                      ____________________________________________________________
consensus             ATTATCAATTGACTTGATTTTCAGTATACATTGCTCAAGAGATGTCAAGCTTGCTTCAGC
 
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JMFS098C08+           AGGAAGTGAACAATCAGAAGAGACAATTAGCTCAAGAATTTCCAGGCTGCAACTCTGAAC
JMFS112A07+           AGGAAGTGAACAATCAGAAGAGACAATTAGCTCAAGAATTTCCAGGCTGCAACTCTGAAC
JMFS020G10+           AGGAAGTGAACAATCAGAAGAGACAATTAGCTCAAGAATTTCCAGGCTGCAACTCTGAAC
                      ____________________________________________________________
consensus             AGGAAGTGAACAATCAGAAGAGACAATTAGCTCAAGAATTTCCAGGCTGCAACTCTGAAC
 
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JMFS098C08+           CTTTACAATTAATGATTCAGCTTGCAAAACAAAATAAACTTTACTGCTCAATAGTTGCCA
JMFS112A07+           CTTTACAATTAATGATTCAGCTTGCAAAACAAAATAAACTTTACTGCTCAATAGTTGCCA
JMFS020G10+           CTTTACAATTAATGATTCAGCTTGCAAAACAAAATAAACTTTACTGCTCAATAGTTGCCA
                      ____________________________________________________________
consensus             CTTTACAATTAATGATTCAGCTTGCAAAACAAAATAAACTTTACTGCTCAATAGTTGCCA
 
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JMFS098C08+           GGTTTCAAATAACTCCCTTAGTTGATCAATTGAATGGCCCAATCCAGCAAATGCTTTTTG
JMFS112A07+           GGTTTCAAATAACTCCCTTAGTTGATCAATTGAATGGCCCAATCCAGCAAATGCTTTTTG
JMFS020G10+           GGTTTCAAATAACTCCCTTAGTTGATCAATTGAATGGCCCAATCCAGCAAATGCTTTTTG
JMFS044D08+                                    TCAATTGAATGGCCCAATCCAGCAAATGCTTTTTG
                      ____________________________________________________________
consensus             GGTTTCAAATAACTCCCTTAGTTGATCAATTGAATGGCCCAATCCAGCAAATGCTTTTTG
 
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JMFS098C08+           AAACAGTTCATCAGAGACTATTTCAGAATCAACAATGCCATAGAGAATTGGCTTTAATAG
JMFS112A07+           AAACAGTTCATCAGAGACTATTTCAGAATCAACAATGCCATAGAGAATTGGCTTTAATAG
JMFS020G10+           AAACAGTTCATCAGAGACTATTTCAGAATCAACAATGCCATAGAGAATTGGCTTTAATAG
JMFS044D08+           AAACAGTTCATCAGAGACTATTTCAGAATCAACAATGCCATAGAGAATTGGCTTTAATAG
                      ____________________________________________________________
consensus             AAACAGTTCATCAGAGACTATTTCAGAATCAACAATGCCATAGAGAATTGGCTTTAATAG
 
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JMFS098C08+           CTTCAGTATGTCTTCTGCCTTCCAATAATACTTAAGAACTAGTAAAGAATTGATGTTTTC
JMFS112A07+           CTTCAGTATGTCTTCTGCCTTCCAATAATACTTAAGAACTAGTAAAGAATTGATGTTTTC
JMFS020G10+           CTTCAGTATGTCTTCTGCCTTCCAATAATACTTAAGAACTAGTAAAGAATTGATGTTTTC
JMFS044D08+           CTTCAGTATGTCTTCTGCCTTCCAATAATACTTAAGAACTAGTAAAGAATTGATGTTTTC
                      ____________________________________________________________
consensus             CTTCAGTATGTCTTCTGCCTTCCAATAATACTTAAGAACTAGTAAAGAATTGATGTTTTC
 
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JMFS098C08+           CAGTGATGATATATGAAAGAAGCTTGAGATGTTGTTGAGAAGTGCTTTTAATAAAGAAAT
JMFS112A07+           CAGTGATGATATATGAAAGAAGCTTGAGATGTTGTTGAGAAGTGCTTTTAATAAAGAAAT
JMFS020G10+           CAGTGATGATATATGAAAGAAGCTTGAGATGTTGTTGAGAAGTGCTTTTAATAAAGAAAT
JMFS044D08+           CAGTGATGATATATGAAAGAAGCTTGAGATGTTGTTGAGAAGTGCTTTTAATAAAGAAAT
                      ____________________________________________________________
consensus             CAGTGATGATATATGAAAGAAGCTTGAGATGTTGTTGAGAAGTGCTTTTAATAAAGAAAT
 
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JMFS098C08+           CTCCATCCCGCCT                                               
JMFS112A07+           CTCCATCCCGCCT                                               
JMFS020G10+           CTCCATCCCGCCT                                               
JMFS044D08+           CTCCATCCCGCCTGTTGTTTAAAACAGTATTATCCTCAGTAAAGGAAACCAATATTAAAT
                      ____________________________________________________________
consensus             CTCCATCCCGCCTGTTGTTTAAAACAGTATTATCCTCAGTAAAGGAAACCAATATTAAAT
 
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JMFS044D08+           AAAACCTTAGTAGTAAAATCCTCAGCTTCAAACGGTCATATTGATTTCTCGGGTGATTTT
JMSF040G16+               CCTTNGTAGTAAAATCCTCAGCTTCAAACGGTCATATTGATTTCTCGGGTGATTTT
                      ____________________________________________________________
consensus             AAAACCTTAGTAGTAAAATCCTCAGCTTCAAACGGTCATATTGATTTCTCGGGTGATTTT
 
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JMFS044D08+           AAGAAGCCAAGAAAACTTCACCCTTGATTGGCACCAACATCTAATAAGCTTCACAGGATG
JMSF040G16+           AAGAAGCCAAGAAAACTTCACCCTTGATTGGCACCAACATCTAATAAGCTTCACAGGATG
                      ____________________________________________________________
consensus             AAGAAGCCAAGAAAACTTCACCCTTGATTGGCACCAACATCTAATAAGCTTCACAGGATG
 
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JMFS044D08+           AAAACCGAATTAAGAACTCGGGCAGAATTGAGTAGAACAATCGAAGAACAGCGAATCAAG
JMSF040G16+           AAAACCGAATTAAGAACTCGGGCAGAATTGAGTAGAACAATCGAAGAACAGCGAATCAAG
                      ____________________________________________________________
consensus             AAAACCGAATTAAGAACTCGGGCAGAATTGAGTAGAACAATCGAAGAACAGCGAATCAAG
 
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JMFS044D08+           GCGACTAGAATCGGAGATATTGAAAAGAAAAAGCCTCTATGGACTAACCTCTCACTTCAA
JMSF040G16+           GCGACTAGAATCGGAGATATTGAAAAGAAAAAGCCTCTATGGACTAACCTCTCACTTCAA
                      ____________________________________________________________
consensus             GCGACTAGAATCGGAGATATTGAAAAGAAAAAGCCTCTATGGACTAACCTCTCACTTCAA
 
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JMFS044D08+           TTTTCATTTGATTTTGCTTTTTAGTCTTCATAGTTGACAGACAGTGGGGTTTTACAATTA
JMSF040G16+           TTTTCATTTGATTTTGCTTTTTAGTCTTCATAGTTGACAGACAGTGGGGTTTTACAATTA
                      ____________________________________________________________
consensus             TTTTCATTTGATTTTGCTTTTTAGTCTTCATAGTTGACAGACAGTGGGGTTTTACAATTA
 
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JMFS044D08+           TTATTTTTTAATTTATTTATACCCTCTGGCAGTCTGGCCTCTGGCCGTTGAA        
JMSF040G16+           TTATTTTTTAATTTATTTATACCCTCTGGCAGTCTGGCCTCTGGCCGTTGAATATCTCTC
                      ____________________________________________________________
consensus             TTATTTTTTAATTTATTTATACCCTCTGGCAGTCTGGCCTCTGGCCGTTGAATATCTCTC