Contig 013501:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF040F07Sequence697013501 (2)ref|XP_009597488.1|6e-104PREDICTED: F-box protein SKIP5 [Nicotiana tomentosiformis]933013501 (2)ref|XP_011091828.1|5e-142PREDICTED: F-box protein SKIP5 [Sesamum indicum]

Alignment

This contig is upended


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rJMSF040F07-                                                                    AC
                      ____________________________________________________________
consensus                                                                       AC
 
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rJMSF040F07-          AATGGTTAAATTACAACCAGCTTAACAAGCCAGAAGAACATGAGAAGGGGAGAAAATATG
                      ____________________________________________________________
consensus             AATGGTTAAATTACAACCAGCTTAACAAGCCAGAAGAACATGAGAAGGGGAGAAAATATG
 
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rJMSF040F07-          GAATAAAGAAATTTGCATCTAACCAACTACTACTTCACCAGATGGAGCTTGAGGAGTACT
                      ____________________________________________________________
consensus             GAATAAAGAAATTTGCATCTAACCAACTACTACTTCACCAGATGGAGCTTGAGGAGTACT
 
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rJMSF040F07-          ACTGCCATCTTGCTCTACATTGAACCAGAAGAAAAGGGATGTTCGACTATATATGACCCG
                      ____________________________________________________________
consensus             ACTGCCATCTTGCTCTACATTGAACCAGAAGAAAAGGGATGTTCGACTATATATGACCCG
 
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rJMSF040F07-          GACTTGCTGCAACGTAAGTGTACCACTTGTAAGAACAGCCTTGGCACCTCCTTCAATTCG
                      ____________________________________________________________
consensus             GACTTGCTGCAACGTAAGTGTACCACTTGTAAGAACAGCCTTGGCACCTCCTTCAATTCG
 
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rJMSF040F07-          TGTTCGCAAAACTGAAACACTATCAGCGTTAGTCTTCAGTGTAGTAGGGAGGTCTCTCGG
                      ____________________________________________________________
consensus             TGTTCGCAAAACTGAAACACTATCAGCGTTAGTCTTCAGTGTAGTAGGGAGGTCTCTCGG
 
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rJMSF040F07-          GGAACTGGCAGTGCTTACAATTGCGTAGGACAGATGATCCAATGGGTTCGACTCACACTG
JMSF040F07+                                  CGTAGGACAGATGATCCAATGGGTTCGACTCACACTG
                      ____________________________________________________________
consensus             GGAACTGGCAGTGCTTACAATTGCGTAGGACAGATGATCCAATGGGTTCGACTCACACTG
 
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rJMSF040F07-          AAGAATACACCCATCGATTGTCAATCTTCCACTCCGATGAAGCAAGCAGCAGCCAAGCTC
JMSF040F07+           AAGAATACACCCATCGATTGTCAATCTTCCACTCCGATGAAGCAAGCAGCAGCCAAGCTC
                      ____________________________________________________________
consensus             AAGAATACACCCATCGATTGTCAATCTTCCACTCCGATGAAGCAAGCAGCAGCCAAGCTC
 
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rJMSF040F07-          TGCCCTCACAGTAAGGTTGGCTAGTTTGCATGTGGACAAGAACTCCAATGCACTGTCTGA
JMSF040F07+           TGCCCTCACAGTAAGGTTGGCTAGTTTGCATGTGGACAAGAACTCCAATGCACTGTCTGA
                      ____________________________________________________________
consensus             TGCCCTCACAGTAAGGTTGGCTAGTTTGCATGTGGACAAGAACTCCAATGCACTGTCTGA
 
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rJMSF040F07-          ACCACGGGAGCAAGTAAGTATTGTATCATCAGGAATTTCACCTGCACCAATCAGGCATAG
JMSF040F07+           ACCACGGGAGCAAGTAAGTATTGTATCATCAGGAATTTCACCTGCACCAATCAGGCATAG
                      ____________________________________________________________
consensus             ACCACGGGAGCAAGTAAGTATTGTATCATCAGGAATTTCACCTGCACCAATCAGGCATAG
 
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rJMSF040F07-          TGGCTTTTTAATCTGAATATTTGATACACGATGACTTCCGCCACCAGCAATCAGAATGGT
JMSF040F07+           TGGCTTTTTAATCTGAATATTTGATACACGATGACTTCCGCCACCAGCAATCAGAATGGT
                      ____________________________________________________________
consensus             TGGCTTTTTAATCTGAATATTTGATACACGATGACTTCCGCCACCAGCAATCAGAATGGT
 
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rJMSF040F07-          GTCCCCAGGTCTTGCAGAAGAGACAGCTGTCTCAATGTTAGGGAAAATCCCAGGTAGAGA
JMSF040F07+           GTCCCCAGGTCTTGCAGAAGAGACAGCTGTCTCAATGTTAGGGAAAATCCCAGGTAGAGA
                      ____________________________________________________________
consensus             GTCCCCAGGTCTTGCAGAAGAGACAGCTGTCTCAATGTTAGGGAAAATCCCAGGTAGAGA
 
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rJMSF040F07-          TGAATCTCTCACGGAACGGTCAACTCGCAGCCAAAGCCTCGGGTGACATGCCAGGAAACG
JMSF040F07+           TGAATCTCTCACGGAACGGTCAACTCGCAGCCAAAGCCTCGGGTGACATGCCAGGAAACG
                      ____________________________________________________________
consensus             TGAATCTCTCACGGAACGGTCAACTCGCAGCCAAAGCCTCGGGTGACATGCCAGGAAACG
 
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rJMSF040F07-          CCATCTGTGGCAAACCAGTGCGGTGTTATACCGATCTGGGATAGGAGAAAGGAAGCTGAA
JMSF040F07+           CCATCTGTGGCAAACCAGTGCGGTGTTATACCGATCTGGGATAGGAGAAAGGAAGCTGAA
                      ____________________________________________________________
consensus             CCATCTGTGGCAAACCAGTGCGGTGTTATACCGATCTGGGATAGGAGAAAGGAAGCTGAA
 
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rJMSF040F07-          GATATGCATGAGACAGCCGTCATCGAGGTTGTTAATATCATGACGAGAGTAGCAGTAGTA
JMSF040F07+           GATATGCATGAGACAGCCGTCATCGAGGTTGTTAATATCATGACGAGAGTAGCAGTAGTA
                      ____________________________________________________________
consensus             GATATGCATGAGACAGCCGTCATCGAGGTTGTTAATATCATGACGAGAGTAGCAGTAGTA
 
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rJMSF040F07-          CGGAGCCGCTTCCAGCTCCGACGCCGTCGTCGGGTGGCTTTCCTTAGAAAGACGTCTCAA
JMSF040F07+           CGGAGCCGCTTCCAGCTCCGACGCCGTCGTCGGGTGGCTTTCCTTAGAAAGACGTCTCAA
                      ____________________________________________________________
consensus             CGGAGCCGCTTCCAGCTCCGACGCCGTCGTCGGGTGGCTTTCCTTAGAAAGACGTCTCAA
 
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rJMSF040F07-          TTTACGCCGCTCCTCA                                            
JMSF040F07+           TTTACGCCGCTCCTCAACCAACTCCGCCATTCTTCACAGAAACCTTCTGCCTGCGAGACC
                      ____________________________________________________________
consensus             TTTACGCCGCTCCTCAACCAACTCCGCCATTCTTCACAGAAACCTTCTGCCTGCGAGACC
 
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JMSF040F07+           GCTGCGACGCCGATCGAACATCGTAAGTTGCTCTTCTCTCCACGTTATCAACGTACTGTC
                      ____________________________________________________________
consensus             GCTGCGACGCCGATCGAACATCGTAAGTTGCTCTTCTCTCCACGTTATCAACGTACTGTC