Contig 013497:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF039L22Sequence638013497 (2)ref|XP_009764917.1|1e-17PREDICTED: filament-like plant protein isoform X3 [Nicotiana sylvestris]772013497 (2)ref|XP_009623605.1|6e-32PREDICTED: filament-like plant protein 3 [Nicotiana tomentosiformis] ref|XP_0096

Alignment

This contig is upended


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rJMSF039L22-                                          CGTCACGACGATGGAAAAATATTCTACC
                      ____________________________________________________________
consensus                                             CGTCACGACGATGGAAAAATATTCTACC
 
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rJMSF039L22-          CAACATTTCATGTACAAATGAACTGCTGCTTAACTGAAACATACATAAATATTGTACCTT
                      ____________________________________________________________
consensus             CAACATTTCATGTACAAATGAACTGCTGCTTAACTGAAACATACATAAATATTGTACCTT
 
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rJMSF039L22-          GGAAATTTTGAATCCTGATGTTCCTTATGGTTGCTGATGTCCATGGGATATGCTGCTCTT
                      ____________________________________________________________
consensus             GGAAATTTTGAATCCTGATGTTCCTTATGGTTGCTGATGTCCATGGGATATGCTGCTCTT
 
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rJMSF039L22-          ACTTGAATTCAGTTGGTCTTGACCAACTTTTCGTTCAGGGTTTCAGATTCCTTTACCACA
                      ____________________________________________________________
consensus             ACTTGAATTCAGTTGGTCTTGACCAACTTTTCGTTCAGGGTTTCAGATTCCTTTACCACA
 
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rJMSF039L22-          AAGAGAACCATACACAGTGAATTCCTAACAGCTGCTGCTCACATCTGTCTTAACAGAGCT
                      ____________________________________________________________
consensus             AAGAGAACCATACACAGTGAATTCCTAACAGCTGCTGCTCACATCTGTCTTAACAGAGCT
 
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rJMSF039L22-          CACGTGGTCTCTAGGAGTCGATCAGGAAATCTTCTAAGTTTGAAAGGGTTTTCAACTGCC
                      ____________________________________________________________
consensus             CACGTGGTCTCTAGGAGTCGATCAGGAAATCTTCTAAGTTTGAAAGGGTTTTCAACTGCC
 
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rJMSF039L22-          TACCAATTGAAGCAATTGTCTTTTTGCACTCCTCAAATTTACTAGCAGCCACTGCCAGTT
                      ____________________________________________________________
consensus             TACCAATTGAAGCAATTGTCTTTTTGCACTCCTCAAATTTACTAGCAGCCACTGCCAGTT
 
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rJMSF039L22-          CTTTGTCCTTATTGAATTGAAATTCTCCAATGGTTGCTGCTTTCTGAAGCTGGCATTGGG
                      ____________________________________________________________
consensus             CTTTGTCCTTATTGAATTGAAATTCTCCAATGGTTGCTGCTTTCTGAAGCTGGCATTGGG
 
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rJMSF039L22-          ATGTTAGTCTTAAATTTAAACTTTCTAATTTCCTCAACTTTAGAATAGATTCATGTGAAA
                      ____________________________________________________________
consensus             ATGTTAGTCTTAAATTTAAACTTTCTAATTTCCTCAACTTTAGAATAGATTCATGTGAAA
 
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rJMSF039L22-          AAGCCTGTTCTTTTTTCACCTCTTCTTCAAGTGAATAAACTCTTGAATGCAAAGCTTGCA
JMSF039L22+                                 TTCTTCAAGTGAATAAACTCTTGAATGCAAAGCTTGCA
                      ____________________________________________________________
consensus             AAGCCTGTTCTTTTTTCACCTCTTCTTCAAGTGAATAAACTCTTGAATGCAAAGCTTGCA
 
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rJMSF039L22-          GTTGAAATTCTGCAGCTTTGAGTTGAGACTCTGTTTCCTCTTTCTTATGATTGCTATCCT
JMSF039L22+           GTTGAAATTCTGCAGCTTTGAGTTGAGACTCTGTTTCCTCTTTCTTATGATTGCTATCCT
                      ____________________________________________________________
consensus             GTTGAAATTCTGCAGCTTTGAGTTGAGACTCTGTTTCCTCTTTCTTATGATTGCTATCCT
 
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rJMSF039L22-          CTAGTTCAGACTCAATGGTGCACCTTATTTCATTTGCCCTTTCCAACTGAGTCTGAAGCT
JMSF039L22+           CTAGTTCAGACTCAATGGTGCACCTTATTTCATTTGCCCTTTCCAACTGAGTCTGAAGCT
                      ____________________________________________________________
consensus             CTAGTTCAGACTCAATGGTGCACCTTATTTCATTTGCCCTTTCCAACTGAGTCTGAAGCT
 
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rJMSF039L22-          CTAACAAGTTGGCCTCTGCTTGTTCTAAGCGCTCTATTGATTTCTTAAGCTTTGAATTGG
JMSF039L22+           CTAACAAGTTGGCCTCTGCTTGTTCTAAGCGCTCTATTGATTTCTTAAGCTTTGAATTGG
                      ____________________________________________________________
consensus             CTAACAAGTTGGCCTCTGCTTGTTCTAAGCGCTCTATTGATTTCTTAAGCTTTGAATTGG
 
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rJMSF039L22-          AAACCTCAAGCTCTTGCTGAGCAG                                    
JMSF039L22+           AAACCTCAAGCTCTTGCTGAGCAGCTATCCGTGCCTCTCTTTCAGTTGAGAAATGAGCAT
                      ____________________________________________________________
consensus             AAACCTCAAGCTCTTGCTGAGCAGCTATCCGTGCCTCTCTTTCAGTTGAGAAATGAGCAT
 
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JMSF039L22+           CAAGGTCTGCCAAACTGACCTGTGCTTCCTCTAACCACACTTCTGATTTCTGAAGTTTAA
                      ____________________________________________________________
consensus             CAAGGTCTGCCAAACTGACCTGTGCTTCCTCTAACCACACTTCTGATTTCTGAAGTTTAA
 
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JMSF039L22+           GATTGGTATCCTTAAGTTCTGCCAAAAGTGTTTTCCTTGCTTCGTGTGCCATATCTAACT
                      ____________________________________________________________
consensus             GATTGGTATCCTTAAGTTCTGCCAAAAGTGTTTTCCTTGCTTCGTGTGCCATATCTAACT
 
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JMSF039L22+           TAGATTGAAGCTTAAGATTGGTATCCTTAAGTTCTGCCTCAAGTGTTTTCCTTGCTTCGT
                      ____________________________________________________________
consensus             TAGATTGAAGCTTAAGATTGGTATCCTTAAGTTCTGCCTCAAGTGTTTTCCTTGCTTCGT
 
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JMSF039L22+           GTGCCATATCTAACTTAGATTGAAGCTTAAGATTGGTATCCTTATGTTCTGCCTCAACTG
                      ____________________________________________________________
consensus             GTGCCATATCTAACTTAGATTGAAGCTTAAGATTGGTATCCTTATGTTCTGCCTCAACTG
 
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JMSF039L22+           TTTTCCTTGCTTCATGTGCCATATCTAACTTAGTTTGAAGCTCTGCCACATTCATTTCTG
                      ____________________________________________________________
consensus             TTTTCCTTGCTTCATGTGCCATATCTAACTTAGTTTGAAGCTCTGCCACATTCATTTCTG
 
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JMSF039L22+           TTTTCTCTAAATGCTCTATTAATTTCTTAAGCTTTGCAGAAGTAGTCTGAAATTCTACCC
                      ____________________________________________________________
consensus             TTTTCTCTAAATGCTCTATTAATTTCTTAAGCTTTGCAGAAGTAGTCTGAAATTCTACCC