| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF044D06 | Sequence | 622 | 013489 (4) | gb|EYU23114.1| | 2e-128 | hypothetical protein MIMGU_mgv1a004585mg [Erythranthe guttata] | 646 | 011177 (4) | |||
| JMFF045C14 | Sequence | 621 | 013489 (4) | gb|EYU23115.1| | 2e-130 | hypothetical protein MIMGU_mgv1a004585mg [Erythranthe guttata] | 658 | 011177 (4) | |||
| JMSF029L06 | Sequence | 661 | 013489 (4) | gb|EYU23115.1| | 3e-141 | hypothetical protein MIMGU_mgv1a004585mg [Erythranthe guttata] | 738 | 011177 (4) | dbj|BAF95167.1| | 2e-38 | similar to putative preRNA processing ribonucleoprotein [Ipomoea nil] |
| JMSF039E04 | Sequence | 675 | 013489 (4) | gb|EYU23115.1| | 1e-142 | hypothetical protein MIMGU_mgv1a004585mg [Erythranthe guttata] | 852 | 011177 (4) | dbj|BAF95167.1| | 9e-79 | similar to putative preRNA processing ribonucleoprotein [Ipomoea nil] |
This contig is upended
. : . : . : . : . : . :
JMSF029L06+ GGCA
JMSF039E04+ TTTGCAAGTTTGGCA
____________________________________________________________
consensus TTTGCAAGTTTGGCA
. : . : . : . : . : . :
JMFF045C14+ TCCGGGAAATGCCAAGAATACCATTCT
JMFF044D06+ TCCGGGAAATGCCAAGAATACCATTCT
JMSF029L06+ TATAGATAATTATCATTAATAATCTTCACAAGTTCCGGGAAATGCCAAGAATACCATTCT
JMSF039E04+ TATAGATAATTATCATTAATAATCTTCACAAGTTCCGGGAAATGCCAAGAATACCATTCT
____________________________________________________________
consensus TATAGATAATTATCATTAATAATCTTCACAAGTTCCGGGAAATGCCAAGAATACCATTCT
. : . : . : . : . : . :
JMFF045C14+ CTGACTCTCATGNAGAAGGTATTTACATCTTTATCAAGAGTATCAAGCAAGAATATTGCT
JMFF044D06+ CTGACTCTCATGNAGAAGGTATTACATTCTTATCNAAGAGTATCAAGCAAGAATATTGCT
JMSF029L06+ CTGACTCTCATTGAGAAGGTATTTACATCTTTATCAAGAGTATCAAGCAAGAATATTGCT
JMSF039E04+ CTGACTCTCATTGAGAAGGTATTTACATCTTTATCAAGAGTATCAAGCAAGAATATTGCT
____________________________________________________________
consensus CTGACTCTCATTGAGAAGGTATTTACATCTTTATCAAGAGTATCAAGCAAGAATATTGCT
. : . : . : . : . : . :
JMFF045C14+ TGAATAACCATATNGTCGACCCGATTAACATTGAACTTGACCTTTGCTCTGCTATAGCTG
JMFF044D06+ TGAATAACCATATTGTCGACCCGATTAACATTGAACTTGACCTTTGCTCTGCTATAGCTG
JMSF029L06+ TGAATAACCATATTGTCGACCCGATTAACATTGAACTTGACCTTTGCTCTGCTATAGCTG
JMSF039E04+ TGAATAACCATATTGTCGACCCGATTAACATTGAACTTGACCTTTGCTCTGCTATAGCTG
____________________________________________________________
consensus TGAATAACCATATTGTCGACCCGATTAACATTGAACTTGACCTTTGCTCTGCTATAGCTG
. : . : . : . : . : . :
JMFF045C14+ TGTCCCAAACCCAGCTGAGCTTTCTCCAGGTCACCCGGCTTTAGGTTTTCAATAAACTTC
JMFF044D06+ TGTCCCAAACCCAGCTGAGCTTTCTCCAGGTCACCCGGCTTTAGGTTTTCAATAAACTTC
JMSF029L06+ TGTCCCAAACCCAGCTGAGCTTTCTCCAGGTCACCCGGCTTTAGGTTTTCAATAAACTTC
JMSF039E04+ TGTCCCAAACCCAGCTGAGCTTTCTCCAGGTCACCCGGCTTTAGGTTTTCAATAAACTTC
____________________________________________________________
consensus TGTCCCAAACCCAGCTGAGCTTTCTCCAGGTCACCCGGCTTTAGGTTTTCAATAAACTTC
. : . : . : . : . : . :
JMFF045C14+ TCAAAATGCAACCTCACCCCTCGCAAAAGCTCTAGAACAAATTCATTGCTTTGGCAAGGA
JMFF044D06+ TCAAAATGCAACCTCACCCCTCGCAAAAGCTCTAGAACAAATTCATTGCTTTGGCAAGGA
JMSF029L06+ TCAAAATGCAACCTCACCCCTCGCAAAAGCTCTAGAACAAATTCATTGCTTTGGCAAGGA
JMSF039E04+ TCAAAATGCAACCTCACCCCTCGCAAAAGCTCTAGAACAAATTCATTGCTTTGGCAAGGA
____________________________________________________________
consensus TCAAAATGCAACCTCACCCCTCGCAAAAGCTCTAGAACAAATTCATTGCTTTGGCAAGGA
. : . : . : . : . : . :
JMFF045C14+ ATTTTAGTTTCTTCAAATATATGTGATCCAAGCTTAGGCTCTGCAAGGCCTAAACTGAAC
JMFF044D06+ ATTTTAGTTTCTTCAAATATATGTGATCCAAGCTTAGGCTCTGCAAGGCCTAAACTGAAC
JMSF029L06+ ATTTTAGTTTCTTCAAATATATGTGATCCAAGCTTAGGCTCTGCAAGGCCTAAACTGAAC
JMSF039E04+ ATTTTAGTTTCTTCAAATATATGTGATCCAAGCTTAGGCTCTGCAAGGCCTAAACTGAAC
____________________________________________________________
consensus ATTTTAGTTTCTTCAAATATATGTGATCCAAGCTTAGGCTCTGCAAGGCCTAAACTGAAC
. : . : . : . : . : . :
JMFF045C14+ TTAGCCTTCTTACTCTCTTTTACCTTTGGGAGAGTAAGTTCCAAGAAGTTCCTTAGCTCA
JMFF044D06+ TTAGCCTTCTTACTCTCTTTTACCTTTGGGAGAGTAAGTTCCAAGAAGTTCCTTAGCTCA
JMSF029L06+ TTAGCCTTCTTACTCTCTTTTACCTTTGGGAGAGTAAGTTCCAAGAAGTTCCTTAGCTCA
JMSF039E04+ TTAGCCTTCTTACTCTCTTTTACCTTTGGGAGAGTAAGTTCCAAGAAGTTCCTTAGCTCA
____________________________________________________________
consensus TTAGCCTTCTTACTCTCTTTTACCTTTGGGAGAGTAAGTTCCAAGAAGTTCCTTAGCTCA
. : . : . : . : . : . :
JMFF045C14+ TCTGTCATTTGCCCTTCGGAAACGGCGTTGCACTGATTCAGGGCATCGAGAGCGGACTCG
JMFF044D06+ TCTGTCATTTGCCCTTCGGAAACGGCGTTGCACTGATTCAGGGCATCGAGAGCGGACTCG
JMSF029L06+ TCTGTCATTTGCCCTTCGGAAACGGCGTTGCACTGATTCAGGGCATCGAGAGCGGACTCG
JMSF039E04+ TCTGTCATTTGCCCTTCGGAAACGGCGTTGCACTGATTCAGGGCATCGAGAGCGGACTCG
____________________________________________________________
consensus TCTGTCATTTGCCCTTCGGAAACGGCGTTGCACTGATTCAGGGCATCGAGAGCGGACTCG
. : . : . : . : . : . :
JMFF045C14+ AAGGGGTTAAATGCAACGAGTTTTACAACTTTACCGAAGCGATTGAGATCGGAGATTGAC
JMFF044D06+ AAGGGGTTAAATGCAACGAGTTTTACAACTTTACCGAAGCGATTGAGATCGGAGATTGAC
JMSF029L06+ AAGGGGTTAAATGCAACGAGTTTTACAACTTTACCGAAGCGATTGAGATCGGAGATTGAC
JMSF039E04+ AAGGGGTTAAATGCAACGAGTTTTACAACTTTACCGAAGCGATTGAGATCGGAGATTGAC
____________________________________________________________
consensus AAGGGGTTAAATGCAACGAGTTTTACAACTTTACCGAAGCGATTGAGATCGGAGATTGAC
. : . : . : . : . : . :
JMFF045C14+ TTCCGGACAGCATCGGTGCTCTGTCCGATTTCGTCAAGCCCGTGCGCCAGGAACAGCCCA
JMFF044D06+ TTCCGGACAGCATCGGTGCTCTGTCCGATTTCGTCAAGCCCGTGCGCCAGGAACAGCCCA
JMSF029L06+ TTCCGGACAGCATCGGTGCTCTGTCCGATTTCGTCAAGCCCGTGCGCCAGGAACAGCCCA
JMSF039E04+ TTCCGGACAGCATCGGTGCTCTGTCCGATTTCGTCAAGCCCGTGCGCCAGGAACAGCCCA
____________________________________________________________
consensus TTCCGGACAGCATCGGTGCTCTGTCCGATTTCGTCAAGCCCGTGCGCCAGGAACAGCCCA
. : . : . : . : . : . :
JMFF045C14+ TAACCAGAGGCCGACTCGTACAACAGGTAAAGCGCCATTTTTGTGTATCAACTC
JMFF044D06+ TAACCAGAGGCCGACTCGTACAACAGGTAAAGCGCCATTTTTGTGTATCAACTC
JMSF029L06+ TAACCAGAGGCCGACTCGTACAACAGGTAAAGCGCCATTTTTGTGTATCAACTC
JMSF039E04+ TAACCAGAGGCCGACTCGTACAACAGGTAAAGCGCCATTTTTGTGTATCAACTCCGAGTA
____________________________________________________________
consensus TAACCAGAGGCCGACTCGTACAACAGGTAAAGCGCCATTTTTGTGTATCAACTCCGAGTA