Contig 013483:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF038I23Sequence678013483 (2)dbj|BAF64710.1|5e-14putative transposase [Ipomoea tricolor]867013483 (2)dbj|BAF64710.1|2e-08putative transposase [Ipomoea tricolor]

Alignment

This contig is upended


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rJMSF038I23-                                                        ATTTGGTCTCGAAT
                      ____________________________________________________________
consensus                                                           ATTTGGTCTCGAAT
 
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rJMSF038I23-          TCGTTACATAAATTCTTCTACTCTTATAATTAGAACCTCAAAAGGGAGCGACGCGGCAGT
                      ____________________________________________________________
consensus             TCGTTACATAAATTCTTCTACTCTTATAATTAGAACCTCAAAAGGGAGCGACGCGGCAGT
 
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rJMSF038I23-          AAAGATGAACACGAACCAAGATTTCCAACCCTTGTTGAAACCTTGTTGAAATCCCGTCGC
                      ____________________________________________________________
consensus             AAAGATGAACACGAACCAAGATTTCCAACCCTTGTTGAAACCTTGTTGAAATCCCGTCGC
 
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rJMSF038I23-          TACCGAGAACCTTCACCCCGTCCGAGCCGAGAACGCCATATAACACTTGCTCTCCTTAAA
                      ____________________________________________________________
consensus             TACCGAGAACCTTCACCCCGTCCGAGCCGAGAACGCCATATAACACTTGCTCTCCTTAAA
 
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rJMSF038I23-          TGAATGAAGAACGCGTGAAAGAGGTCAAGGTTGGGGCGTATGCCCACTTCGAGACACCGG
                      ____________________________________________________________
consensus             TGAATGAAGAACGCGTGAAAGAGGTCAAGGTTGGGGCGTATGCCCACTTCGAGACACCGG
 
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rJMSF038I23-          ACGATGAAAGCAGCCCACGCCCGATGAGAGTTGGGAACCAGATGGCCCACGGAGACACGG
                      ____________________________________________________________
consensus             ACGATGAAAGCAGCCCACGCCCGATGAGAGTTGGGAACCAGATGGCCCACGGAGACACGG
 
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rJMSF038I23-          TGAAGATTGACTTAGCAAATACTTGTCACTATACAATATATTTCAGACTGTCCATCTTGA
                      ____________________________________________________________
consensus             TGAAGATTGACTTAGCAAATACTTGTCACTATACAATATATTTCAGACTGTCCATCTTGA
 
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rJMSF038I23-          TCATCTTCATCAAGCATGTTGGAAAGGTAGTCCTGATCATCACTCAAAGATGGACAATAA
                      ____________________________________________________________
consensus             TCATCTTCATCAAGCATGTTGGAAAGGTAGTCCTGATCATCACTCAAAGATGGACAATAA
 
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rJMSF038I23-          TGCTGAACTAAATCTGCATCATAAGTTATCCCGACAACTGGTATAGACATGGCTCGGTTC
                      ____________________________________________________________
consensus             TGCTGAACTAAATCTGCATCATAAGTTATCCCGACAACTGGTATAGACATGGCTCGGTTC
 
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rJMSF038I23-          TTGAAATGATCAACTTTAGCTAAAACCTTAAACACCATTGCCTTGTTACAAACCTCTTCC
                      ____________________________________________________________
consensus             TTGAAATGATCAACTTTAGCTAAAACCTTAAACACCATTGCCTTGTTACAAACCTCTTCC
 
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rJMSF038I23-          ATACCAGTTGGTAGTGGAGAGTCATCCCTAACAATCAGCTTGTATCTTAAGGTATCCTCT
JMSF038I23+                                                     TATCTTAAGGTATCCTCT
                      ____________________________________________________________
consensus             ATACCAGTTGGTAGTGGAGAGTCATCCCTAACAATCAGCTTGTATCTTAAGGTATCCTCT
 
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rJMSF038I23-          TGCCAATTTGTGGGTTGTATCTTAAGGTATCCTCTTGCCAATTTGTGTGACATGTTGGAC
JMSF038I23+           NGCCAATTTGTGGGTNGTATCTTAAGGTATCCTCTTGCCAATTTGTGTGACATGTTGGAC
                      ____________________________________________________________
consensus             TGCCAATTTGTGGGTTGTATCTTAAGGTATCCTCTTGCCAATTTGTGTGACATGTTGGAC
 
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rJMSF038I23-          ATATAAGAGATCCATCCTTCATCTGCAGCTTCTTAAAGCAGCCATCAGCTCTATAGGAAT
JMSF038I23+           ATATAAGAGATCCATCCTTCATCTGCAGCTTCTTAAAGCAGCCATCAGCTCTATAGGAAT
                      ____________________________________________________________
consensus             ATATAAGAGATCCATCCTTCATCTGCAGCTTCTTAAAGCAGCCATCAGCTCTATAGGAAT
 
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rJMSF038I23-          GGTAGTACCAATTCCTGTTACTCTCAACTGACACAATCCTTTCAAGAACCCAGTAGTTTC
JMSF038I23+           GGTAGTACCAATTCCTGTTACTCTCAACTGACACAATCCTTTCAAGAACCCAGTAGTTTC
                      ____________________________________________________________
consensus             GGTAGTACCAATTCCTGTTACTCTCAACTGACACAATCCTTTCAAGAACCCAGTAGTTTC
 
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rJMSF038I23-          CTTCCTCTGCACTTTCATATAGATCCTTGATAGTGCTTACTATCATACACAAGACTTAGA
JMSF038I23+           CTTCCTCTGCACTTTCATATAGATCCTTGATAGTGCTTACTATCATACACAAGACTTAGA
                      ____________________________________________________________
consensus             CTTCCTCTGCACTTTCATATAGATCCTTGATAGTGCTTACTATCATACACAAGACTTAGA
 
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rJMSF038I23-          ATTCTCTGCACTG                                               
JMSF038I23+           ATTCTCTGCACTGTTGGCATAAGACATCACAGACAAACTATGTATGCTTCTAGGTGGGCT
                      ____________________________________________________________
consensus             ATTCTCTGCACTGTTGGCATAAGACATCACAGACAAACTATGTATGCTTCTAGGTGGGCT
 
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JMSF038I23+           GTGATCAACCTTCAAACTATCTTTGAAATCCTGAAATTCCTTGCCCTCATGATTAAATCA
                      ____________________________________________________________
consensus             GTGATCAACCTTCAAACTATCTTTGAAATCCTGAAATTCCTTGCCCTCATGATTAAATCA
 
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JMSF038I23+           TACTTGTGTAGCATTGTGAACTTGAAATTCTGACTTCATTGTCCAATTGTTTTGCTAGAC
                      ____________________________________________________________
consensus             TACTTGTGTAGCATTGTGAACTTGAAATTCTGACTTCATTGTCCAATTGTTTTGCTAGAC
 
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JMSF038I23+           AAAATTGGAGAAAAATAATCGAAGGACCTTCAACATGAGTCTTGAAATGATGCATGACAA
                      ____________________________________________________________
consensus             AAAATTGGAGAAAAATAATCGAAGGACCTTCAACATGAGTCTTGAAATGATGCATGACAA
 
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JMSF038I23+           TCTCAACATGGTGATCCCACACTGTGCACTTAATACGACATCCCCATTGAGCTTTTTGCA
                      ____________________________________________________________
consensus             TCTCAACATGGTGATCCCACACTGTGCACTTAATACGACATCCCCATTGAGCTTTTTGCA
 
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JMSF038I23+           CATTCAATCTTCCAAGAATAGAAGATAATTTGGTCTCGAATACATTGCATAAATTCTTAT
                      ____________________________________________________________
consensus             CATTCAATCTTCCAAGAATAGAAGATAATTTGGTCTCGAATACATTGCATAAATTCTTAT
 
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JMSF038I23+           ACTCCAAAATTGACTTGGCAAATACTTGTCACTGTACAATATATCGATCATTTCCTAGGC
                      ____________________________________________________________
consensus             ACTCCAAAATTGACTTGGCAAATACTTGTCACTGTACAATATATCGATCATTTCCTAGGC