Contig 013481:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H17-                                      GAGATGATCCAACAAACATCATATTTATATGT
                      ____________________________________________________________
consensus                                         GAGATGATCCAACAAACATCATATTTATATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H17-          AATCTTAAACATGTCTATGTACAAAAATACATCTTAACCAAATTATGTACACAAATATTC
                      ____________________________________________________________
consensus             AATCTTAAACATGTCTATGTACAAAAATACATCTTAACCAAATTATGTACACAAATATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H17-          ATGTACAGTACCGTGGGACGCTGCCCCATCCTGTGTTACATGCCCATGACTCTGTTCCGT
                      ____________________________________________________________
consensus             ATGTACAGTACCGTGGGACGCTGCCCCATCCTGTGTTACATGCCCATGACTCTGTTCCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H17-          CTAACATCTATCATCCTCCAATATAAAGGAGGAAGGAAACAAATGTTTTCTTTACTCTAA
                      ____________________________________________________________
consensus             CTAACATCTATCATCCTCCAATATAAAGGAGGAAGGAAACAAATGTTTTCTTTACTCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H17-          ATTCAAGCAGAGTAGAAACTGAAGTTCAAAGTTGATTGCCACGATTATGCATAGTCAAAA
                      ____________________________________________________________
consensus             ATTCAAGCAGAGTAGAAACTGAAGTTCAAAGTTGATTGCCACGATTATGCATAGTCAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H17-          GTGCTCAAAGTTTTCAGTCATCCCTGTCTATGCAACACCAAAATGTGCAGCTGATGTTTG
                      ____________________________________________________________
consensus             GTGCTCAAAGTTTTCAGTCATCCCTGTCTATGCAACACCAAAATGTGCAGCTGATGTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004J20+                      ATATATCCATATGAAACTGACAGAGGGGATGCACATATATGCACATTAC
rJMSF038H17-          TTACTATGACTATATATCCATATGAAACTGACAGAGGGGATGCACATATATGCACATTAC
                      ____________________________________________________________
consensus             TTACTATGACTATATATCCATATGAAACTGACAGAGGGGATGCACATATATGCACATTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004J20+           TAATCCTCTTTTCCTTGTTTATCACTCTCAGAGCAGCTACAATCTAAGCCCAAGCACTTT
rJMSF038H17-          TAATCCTCTTTTCCTTGTTTATCACTCTCAGAGCAGCTACAATCTAAGCCCAAGCACTTT
JMSF038H17+                            TTTATCACTCTCAGAGCAGCTACAATCTAAGCCCAAGCACTTT
                      ____________________________________________________________
consensus             TAATCCTCTTTTCCTTGTTTATCACTCTCAGAGCAGCTACAATCTAAGCCCAAGCACTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004J20+           AGAAATGCTTGTTTTGCCAGTCCAAGATAGTGGCAAGGATGTCTCCTACCACCAAAAGAC
rJMSF038H17-          AGAAATGCTTGTTTTGCCAGTCCAAGATAGTGGCAAGGATGTCTCCTACCACCAAAAGAC
JMSF038H17+           AGAAATGCTTGTTTTGCCAGTCCAAGATAGTGGCAAGGATGTCTCCTACCACCAAAAGAC
                      ____________________________________________________________
consensus             AGAAATGCTTGTTTTGCCAGTCCAAGATAGTGGCAAGGATGTCTCCTACCACCAAAAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004J20+           CTTTCTTCTCCCCTTAAAACTCCTCTACTCGTAGTTGTTCCTAAGCCCTCAAATTTCTGC
rJMSF038H17-          CTTTCTTCTCCCCTTAAAACTCCTCTACTCGTAGTTGTTCCTAAGCCCTCAAATTTCTGC
JMSF038H17+           CTTTCTTCTCCCCTTAAAACTCCTCTACTCGTAGTTGTTCCTAAGCCCTCAAATTTCTGC
                      ____________________________________________________________
consensus             CTTTCTTCTCCCCTTAAAACTCCTCTACTCGTAGTTGTTCCTAAGCCCTCAAATTTCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004J20+           TTCTCATCTATTCTCTG                                           
rJMSF038H17-          TTCTCATCTATTCTCTGCACTCAATGAATCAAACACTTCATCAGATCAAGTTTTCAGTAA
JMSF038H17+           TTCTCATCTATTCTCTGCACTCAATGAATCAAACACTTCATCAGATCAAGTTTTCAGTAA
                      ____________________________________________________________
consensus             TTCTCATCTATTCTCTGCACTCAATGAATCAAACACTTCATCAGATCAAGTTTTCAGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H17-          GAAATATATTTACACAATGCTCAAAACAAGTTGAAAACAATAAAGCTTTTAGCAATGAAT
JMSF038H17+           GAAATATATTTACACAATGCTCAAAACAAGTTGAAAACAATAAAGCTTTTAGCAATGAAT
                      ____________________________________________________________
consensus             GAAATATATTTACACAATGCTCAAAACAAGTTGAAAACAATAAAGCTTTTAGCAATGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H17-          CAAAAACACCAAGAAAATGGGACAAACTCAGCCAAGTTGATCAGGTTAATAGCTTGTAAA
JMSF038H17+           CAAAAACACCAAGAAAATGGGACAAACTCAGCCAAGTTGATCAGGTTAATAGCTTGTAAA
                      ____________________________________________________________
consensus             CAAAAACACCAAGAAAATGGGACAAACTCAGCCAAGTTGATCAGGTTAATAGCTTGTAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H17-          TTAGAAAGATTCAAAACAACCTAAAAACACCCAGATCGAAACTCCAAGATTCCAATTAAC
JMSF038H17+           TTAGAAAGATTCAAAACAACCTAAAAACACCCAGATCGAAACTCCAAGATTCCAATTAAC
                      ____________________________________________________________
consensus             TTAGAAAGATTCAAAACAACCTAAAAACACCCAGATCGAAACTCCAAGATTCCAATTAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H17-          AATTTCTTCTGATCTTTATGAAAAACAGGAAAAGACAGACTGGG                
JMSF038H17+           AATTTCTTCTGATCTTTATGAAAAACAGGAAAAGACAGACTGGGTACCTGGATTTTGTGA
                      ____________________________________________________________
consensus             AATTTCTTCTGATCTTTATGAAAAACAGGAAAAGACAGACTGGGTACCTGGATTTTGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038H17+           TTAGATTGACCGGACGACGAGGGGCGGGAGCCACAGGCGGCGGATGAGGGGTGATTGGAA
                      ____________________________________________________________
consensus             TTAGATTGACCGGACGACGAGGGGCGGGAGCCACAGGCGGCGGATGAGGGGTGATTGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038H17+           GGATCCGAGGCGACAAGGCTAAACCCAACAAGGAGAAGTAGAAGAAGAAGGAGTGTAATC
                      ____________________________________________________________
consensus             GGATCCGAGGCGACAAGGCTAAACCCAACAAGGAGAAGTAGAAGAAGAAGGAGTGTAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038H17+           AGAAGCTGAATCCAAATTAGCCATGGAACTTTGTAGCTCTCAATTATAAACTCCTCTCTC
                      ____________________________________________________________
consensus             AGAAGCTGAATCCAAATTAGCCATGGAACTTTGTAGCTCTCAATTATAAACTCCTCTCTC