Contig 013477:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018M10Sequence569013477 (3)ref|XP_009796490.1|92.0PREDICTED: uncharacterized protein LOC104243062 [Nicotiana sylvestris]750001438 (2)ref|XP_009796490.1|110PREDICTED: uncharacterized protein LOC104243062 [Nicotiana sylvestris]
JMSF007N14Sequence374013477 (3)
JMSF037O20Sequence647013477 (3)ref|XP_009796490.1|92.0PREDICTED: uncharacterized protein LOC104243062 [Nicotiana sylvestris]713001438 (2)ref|XP_009796490.1|110PREDICTED: uncharacterized protein LOC104243062 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF018M10+                             CTCAATGGCACTGCAAGTCGAGTTTCCAGAACCAATACTCG-
JMSF037O20+                        TGTCCCTCAATGNCACTGCAAGTCGAGTTTCCAGAACCAATACTCGT
                      ____________________________________________________________
consensus                          TGTCCCTCAATGGCACTGCAAGTCGAGTTTCCAGAACCAATACTCGT
 
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JMFF018M10+           TTCCCGTACTACTTTGATAGCCACCACCATCCTCATTTACCTGGTTAGATTGGGTTGATT
JMSF037O20+           TTCCCGTACTACTTTGATAGCCACCACCATCCTCATTTACCTGGTTAGATTGGGTTGATT
                      ____________________________________________________________
consensus             TTCCCGTACTACTTTGATAGCCACCACCATCCTCATTTACCTGGTTAGATTGGGTTGATT
 
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JMFF018M10+           CTTTTTCAAGAGTAGCCACTGCTCTTATCATCAACCCACCCCGGCATAACTTAATTCCCC
JMSF037O20+           CTTTTTCAAGAGTAGCCACTGCTCTTATCATCAACCCACCCCGGCATAACTTAATTCCCC
                      ____________________________________________________________
consensus             CTTTTTCAAGAGTAGCCACTGCTCTTATCATCAACCCACCCCGGCATAACTTAATTCCCC
 
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JMFF018M10+           CAAAACTATGAGCTTTTTCCGGTACACAGAAAGATTTCCATAACGAAGCAAACCTAATAT
JMSF007N14+                                                                      T
JMSF037O20+           CAAAACTATGAGCTTTTTCCGGTACACAGAAAGATTTCCATAACGAAGCAAACCTAATAT
                      ____________________________________________________________
consensus             CAAAACTATGAGCTTTTTCCGGTACACAGAAAGATTTCCATAACGAAGCAAACCTAATAT
 
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JMFF018M10+           CCTTCCCAGACTTGAATCTATTACAGAAGAGAAGTTGAGAACTAACTGCACAAACATCTT
JMSF007N14+           CCTTCCCAGACTTGAATCTATTACAGAAGAGAAGTTGAGAACTAACTGCACAAACATCTT
JMSF037O20+           CCTTCCCAGACTTGAATCTATTACAGAAGAGAAGTTGAGAACTAACTGCACAAACATCTT
                      ____________________________________________________________
consensus             CCTTCCCAGACTTGAATCTATTACAGAAGAGAAGTTGAGAACTAACTGCACAAACATCTT
 
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JMFF018M10+           TCTGGAAAACAGGCCGTGTAGTTACTGTAGTAGCAATATCTAATAAATGCATGGGGAGCT
JMSF007N14+           TCTGGAAAACAGGCCGTGTAGTTACTGTAGTAGCAATATCTAATAAATGCATGGGGAGCT
JMSF037O20+           TCTGGAAAACAGGCCGTGTAGTTACTGTAGTAGCAATATCTAATAAATGCATGGGGAGCT
                      ____________________________________________________________
consensus             TCTGGAAAACAGGCCGTGTAGTTACTGTAGTAGCAATATCTAATAAATGCATGGGGAGCT
 
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JMFF018M10+           CATCCAGTCAACTGCAATGGGCAGAATTCAGATAAAGAAATGTAATGCCCGGTGATTTTC
JMSF007N14+           CATCCAGTCAACTGCAATGGGCAGAATTCAGATAAAGAAATGTAATGCCCGGTGATTTTC
JMSF037O20+           CATCCAGTCAACTGCAATGGGCAGAATTCAGATAAAGAAATGTAATGCCCGGTGATTTTC
                      ____________________________________________________________
consensus             CATCCAGTCAACTGCAATGGGCAGAATTCAGATAAAGAAATGTAATGCCCGGTGATTTTC
 
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JMFF018M10+           AATCCTTGGTGCTGCCCAAGTTGAAACCTTTGCTGAAATCTGGTGCTAGGGTTTGTAAAG
JMSF007N14+           AATCCTTGGTGCTGCCCAAGTTGAAACCTTTGCTGAAATCTGGTGCTAGGGTTTGTAAAG
JMSF037O20+           AATCCTTGGTGCTGCCCAAGTTGAAACCTTTGCTGAAATCTGGTGCTAGGGTTTGTAAAG
                      ____________________________________________________________
consensus             AATCCTTGGTGCTGCCCAAGTTGAAACCTTTGCTGAAATCTGGTGCTAGGGTTTGTAAAG
 
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JMFF018M10+           GATTAGCGGAAACGGGAATGCAAATTATGCAATCAGAGAAGCAAGGAGGAGTGAAGAACA
JMSF007N14+           GATTAGCGGAAACGGGAATGCAAATTATGCAATCAGAGAAGCAAGGAGGAGTGAAGAACA
JMSF037O20+           GATTAGCGGAAACGGGAATGCAAATTATGCAATCAGAGAAGCAAGGAGGAGTGAAGAACA
                      ____________________________________________________________
consensus             GATTAGCGGAAACGGGAATGCAAATTATGCAATCAGAGAAGCAAGGAGGAGTGAAGAACA
 
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JMFF018M10+           ACTATGGGTGCGTAGTTGAGACTTGAGAGAGGAGAGGCCACAAACCTT            
JMSF007N14+           ACTATGGGTGCGTAGTTGAGACTTGAGAGAGGAGAGGCCACAAACCTTAATGAGAAATGA
JMSF037O20+           ACTATGGGTGCGTAGTTGAGACTTGAGAGAGGAGAGGCCACAAACCTTAATGAGAAATGA
                      ____________________________________________________________
consensus             ACTATGGGTGCGTAGTTGAGACTTGAGAGAGGAGAGGCCACAAACCTTAATGAGAAATGA
 
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JMSF007N14+           GTAGTCGTGTCC                                                
JMSF037O20+           GTAGTCGTGTCCAAATAGAACCTCAGGCGCAAAAGAGTAGATATTATGCAGTAGATAATC
                      ____________________________________________________________
consensus             GTAGTCGTGTCCAAATAGAACCTCAGGCGCAAAAGAGTAGATATTATGCAGTAGATAATC