Contig 013469:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF036B24Sequence653013469 (5)ref|XP_004249683.1|9e-53PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Sol
JMSF037B24Sequence696013469 (5)ref|XP_011092835.1|8e-52PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1-like653013469 (5)ref|XP_004249683.1|9e-53PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Sol
JMSF048K05Sequence682013469 (5)ref|XP_004249683.1|1e-52PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Sol727013469 (5)ref|XP_004249683.1|2e-52PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Sol

Alignment

This contig is upended


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JMSF048K05-                                                          GAGAAACAAATTC
rJMSF048K05+                                                         GAGAAACAAATTC
                      ____________________________________________________________
consensus                                                            GAGAAACAAATTC
 
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JMSF048K05-           AGAACCCCAATTCTTCGTTTTGCTCAAGTGTTGATTTTTCTTCTTCGGGTCCTAGGGCTT
rJMSF036B24+                                   AAGTGTTGATTTTTCTTCTTCGGGTCCTAGGGCTT
rJMSF037B24+                                   AAGTGTTGATTTTTCTTCTTCGGGTCCTAGGGCTT
rJMSF048K05+          AGAACCCCAATTCTTCG-TTTGCTCAAGTGTTGATTTTTCTTCTTCGGGTCCTAGGGCTT
JMSF037B24-                                    AAGTGTTGATTTTTCTTCTTCGGGTCCTAGGGCTT
                      ____________________________________________________________
consensus             AGAACCCCAATTCTTCGTTTTGCTCAAGTGTTGATTTTTCTTCTTCGGGTCCTAGGGCTT
 
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JMSF048K05-           AGCGGACGTAGCTCCAGCGTTCCACAGAGATGACGACCCCGTTGATTGCAGGAGTTGCCA
rJMSF036B24+          AGCGGACGTAGCTCCAGCGTTCCACAGAGATGACGACCCCGTTGATTGCAGGAGTTGCCA
rJMSF037B24+          AGCGGACGTAGCTCCAGCGTTCCACAGAGATGACGACCCCGTTGATTGCAGGAGTTGCCA
rJMSF048K05+          AGCGGACGTAGCTCCAGCGTTCCACAGAGATGACGACCCCGTTGATTGCAGGAGTTGCCA
JMSF037B24-           AGCGGACGTAGCTCCAGCGTTCCACAGAGATGACGACCCCGTTGATTGCAGGAGTTGCCA
                      ____________________________________________________________
consensus             AGCGGACGTAGCTCCAGCGTTCCACAGAGATGACGACCCCGTTGATTGCAGGAGTTGCCA
 
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JMSF048K05-           TTGCCGCTGCTGCTTATGCTGGTAGGTATGGAATTCTAGCATGGCAAGCTTTCAAGGCAA
rJMSF036B24+          TTGCCGCTGCTGCTTATGCTGGTAGGTATGGAATTCTAGCATGGCAAGCTTTCAAGGCAA
rJMSF037B24+          TTGCCGCTGCTGCTTATGCTGGTAGGTATGGAATTCTAGCATGGCAAGCTTTCAAGGCAA
rJMSF048K05+          TTGCCGCTGCTGCTTATGCTGGTAGGTATGGAATTCTAGCATGGCAAGCTTTCAAGGCAA
JMSF037B24-           TTGCCGCTGCTGCTTATGCTGGTAGGTATGGAATTCTAGCATGGCAAGCTTTCAAGGCAA
                      ____________________________________________________________
consensus             TTGCCGCTGCTGCTTATGCTGGTAGGTATGGAATTCTAGCATGGCAAGCTTTCAAGGCAA
 
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JMSF048K05-           GACCACCAGCTGCAAGAATGCGGAAATTTTATGAAGGAGGTTTCCAACCGAAAATGACAA
rJMSF036B24+          GACCACCAGCTGCAAGAATGCGGAAATTTTATGAAGGAGGTTTCCAACCGAAAATGACAA
rJMSF037B24+          GACCACCAGCTGCAAGAATGCGGAAATTTTATGAAGGAGGTTTCCAACCGAAAATGACAA
rJMSF048K05+          GACCACCAGCTGCAAGAATGCGGAAATTTTATGAAGGAGGTTTCCAACCGAAAATGACAA
JMSF037B24-           GACCACCAGCTGCAAGAATGCGGAAATTTTATGAAGGAGGTTTCCAACCGAAAATGACAA
                      ____________________________________________________________
consensus             GACCACCAGCTGCAAGAATGCGGAAATTTTATGAAGGAGGTTTCCAACCGAAAATGACAA
 
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JMSF048K05-           GAAGAGAAGCATCTCTTATTCTCGGAGTCAGAGAAAGCACTCCAGCGGATAAAGTGAAGG
rJMSF036B24+          GAAGAGAAGCATCTCTTATTCTCGGAGTCAGAGAAAGCACTCCAGCGGATAAAGTGAAGG
rJMSF037B24+          GAAGAGAAGCATCTCTTATTCTCGGAGTCAGAGAAAGCACTCCAGCGGATAAAGTGAAGG
rJMSF048K05+          GAAGAGAAGCATCTCTTATTCTCGGAGTCAGAGAAAGCACTCCAGCGGATAAAGTGAAGG
JMSF037B24-           GAAGAGAAGCATCTCTTATTCTCGGAGTCAGAGAAAGCACTCCAGCGGATAAAGTGAAGG
                      ____________________________________________________________
consensus             GAAGAGAAGCATCTCTTATTCTCGGAGTCAGAGAAAGCACTCCAGCGGATAAAGTGAAGG
 
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JMSF048K05-           AGGCTCATAGGAGGGTAATGGTGGCTAACCATCCAGACGCAGGCGGTAGCCACTATCTCG
rJMSF036B24+          AGGCTCATAGGAGGGTAATGGTGGCTAACCATCCAGACGCAGGCGGTAGCCACTATCTCG
rJMSF037B24+          AGGCTCATAGGAGGGTAATGGTGGCTAACCATCCAGACGCAGGCGGTAGCCACTATCTCG
rJMSF048K05+          AGGCTCATAGGAGGGTAATGGTGGCTAACCATCCAGACGCAGGCGGTAGCCACTATCTCG
JMSF037B24-           AGGCTCATAGGAGGGTAATGGTGGCTAACCATCCAGACGCAGGCGGTAGCCACTATCTCG
                      ____________________________________________________________
consensus             AGGCTCATAGGAGGGTAATGGTGGCTAACCATCCAGACGCAGGCGGTAGCCACTATCTCG
 
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JMSF048K05-           CATCTAAAATAAACGAAGCCAAGGATGTGCTTCTTGGGAAGACGAAAAGTAGTGGATCTG
rJMSF036B24+          CATCTAAAATAAACGAAGCCAAGGATGTGCTTCTTGGGAAGACGAAAAGTAGTGGATCTG
rJMSF037B24+          CATCTAAAATAAACGAAGCCAAGGATGTGCTTCTTGGGAAGACGAAAAGTAGTGGATCTG
rJMSF048K05+          CATCTAAAATAAACGAAGCCAAGGATGTGCTTCTTGGGAAGACGAAAAGTAGTGGATCTG
JMSF037B24-           CATCTAAAATAAACGAAGCCAAGGATGTGCTTCTTGGGAAGACGAAAAGTANTGGATCTG
                      ____________________________________________________________
consensus             CATCTAAAATAAACGAAGCCAAGGATGTGCTTCTTGGGAAGACGAAAAGTAGTGGATCTG
 
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JMSF048K05-           CATTTTGATTTAGCCACATATTAATCAATTCTTTTAAAAGACTAGTGAATCACAAAATCT
rJMSF036B24+          CATTTTGATTTAGCCACATATTAATCAATTCTTTTAAAAGACTAGTGAATCACAAAATCT
rJMSF037B24+          CATTTTGATTTAGCCACATATTAATCAATTCTTTTAAAAGACTAGTGAATCACAAAATCT
rJMSF048K05+          CATTTTGATTTAGCCACATATTAATCAATTCTTTTAAAAGACTAGTGAATCACAAAATCT
JMSF037B24-           CATTTTGATTTAGCCACATATTAATCAATTCTTTTAAAAGACTAGTGAATCACAAAATCT
                      ____________________________________________________________
consensus             CATTTTGATTTAGCCACATATTAATCAATTCTTTTAAAAGACTAGTGAATCACAAAATCT
 
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JMSF048K05-           CTATCCCTGGAGCATCCAGAGTACCACATGTTCATCAAACCTCTACGGCAATTATATACG
rJMSF036B24+          CTATCCCTGGAGCATCCAGAGTACCACATGTTCATCAAACCTCTACGGCAATTATATACG
rJMSF037B24+          CTATCCCTGGAGCATCCAGAGTACCACATGTTCATCAAACCTCTACGGCAATTATATACG
rJMSF048K05+          CTATCCCTGGAGCATCCAGAGTACCACATGTTCATCAAACCTCTACGGCAATTATATACG
JMSF037B24-           CTATCCCTGGAGCATCCAGAGTACCACATGTTCATCAAACCTCTACGGCAATTATATACG
                      ____________________________________________________________
consensus             CTATCCCTGGAGCATCCAGAGTACCACATGTTCATCAAACCTCTACGGCAATTATATACG
 
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JMSF048K05-           GAAAATTTTTGGGCTTCAAGAATTAATCAGAAAAGTTACTAGGCCTTTCCCTTAGATGGG
rJMSF036B24+          GAAAATTTTTGGGCTTCAAGAATTAATCAGAAAAGTTACTAGGCCTTTCCCTTAGATGGG
rJMSF037B24+          GAAAATTTTTGGGCTTCAAGAATTAATCAGAAAAGTTACTAGGCCTTTCCCTTAGATGGG
rJMSF048K05+          GAAAATTTTTGGGCTTCAAGAATTAATCAGAAAAGTTACTAGGCCTTTCCCTTAGATGGG
JMSF037B24-           GAAAATTTTTGGGCTTCAAGAATTAATCAGAAAAGTTACTAGGCCTTTCCCTTAGATGGG
                      ____________________________________________________________
consensus             GAAAATTTTTGGGCTTCAAGAATTAATCAGAAAAGTTACTAGGCCTTTCCCTTAGATGGG
 
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JMSF048K05-           TTTGTTGAGTGAGGAAGAAATTTTGCTTCACCCCTGTTTTCTGCTTTGTATACTCTGTAT
rJMSF036B24+          TTTGTTGAGTGAGGAAGAAATTTTGCTTCACCCCTGTTTTCTGCTTTGTATACTCTGTAT
rJMSF037B24+          TTTGTTGAGTGAGGAAGAAATTTTGCTTCACCCCTGTTTTCTGCTTTGTATACTCTGTAT
rJMSF048K05+          TTTGTTGAGTGAGGAAGAAATTTTGCTTCACCCCTGTTTTCTGCTTTGTATACTCTGTAT
JMSF037B24-           TTTGTTGAGTGAGGAAGAAATTTTGCTTCACCCCTGTTTTCTGCTTTGTATACTCTGTAT
                      ____________________________________________________________
consensus             TTTGTTGAGTGAGGAAGAAATTTTGCTTCACCCCTGTTTTCTGCTTTGTATACTCTGTAT
 
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JMSF048K05-           CCCCTA                                                      
rJMSF036B24+          CCCCTAGGTT                                                  
rJMSF037B24+          CCCCTAGGTT                                                  
rJMSF048K05+          CCCCTAGGTTTGAATGCAATTCATGGTTGCCTAATGACTTATATGTAATAA         
JMSF037B24-           CCCCTAGGTTTGAATGCAATTCATGGTTGCCTAATGACTTATATGTAATAAATTATTTAC
                      ____________________________________________________________
consensus             CCCCTAGGTTTGAATGCAATTCATGGTTGCCTAATGACTTATATGTAATAAATTATTTAC