Contig 013468:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF036P20Sequence650013468 (2)gb|KJB57342.1|7e-59hypothetical protein B456_009G158900 [Gossypium raimondii]716013468 (2)ref|XP_010655601.1|1e-117PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036P20-                                                                     A
                      ____________________________________________________________
consensus                                                                        A
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036P20-          TATGAACAACACATCAGGGTAAAGCTCACAAGGTTCAATACTAATCTACTCTCACTATTC
                      ____________________________________________________________
consensus             TATGAACAACACATCAGGGTAAAGCTCACAAGGTTCAATACTAATCTACTCTCACTATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036P20-          CTGAAGGCTTTAAACTCAACACTGATGGTGTTAGGAGTCGCAACTACTTCATTCATCCCA
                      ____________________________________________________________
consensus             CTGAAGGCTTTAAACTCAACACTGATGGTGTTAGGAGTCGCAACTACTTCATTCATCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036P20-          TGTATCTGTTTTCACCCTAACACGTTCACCGTTGAAGTGAATATATTTCCATTTCCTCTG
                      ____________________________________________________________
consensus             TGTATCTGTTTTCACCCTAACACGTTCACCGTTGAAGTGAATATATTTCCATTTCCTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036P20-          ATACCTTTTCAGAACCATTTTCTGCTTGTCTAATTGACCTAATGTGTGGAAAGCTCGAGC
                      ____________________________________________________________
consensus             ATACCTTTTCAGAACCATTTTCTGCTTGTCTAATTGACCTAATGTGTGGAAAGCTCGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036P20-          AATTCTTCTAACAGTATCTTCATCCGGTTTTACTGCCAATTCTTCCATGTCTGCAAATAC
                      ____________________________________________________________
consensus             AATTCTTCTAACAGTATCTTCATCCGGTTTTACTGCCAATTCTTCCATGTCTGCAAATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036P20-          CTCTATGATCTTATCCGGCATATTATGGTGATCATACAATGAAATAATTCTAGAAAACAG
                      ____________________________________________________________
consensus             CTCTATGATCTTATCCGGCATATTATGGTGATCATACAATGAAATAATTCTAGAAAACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036P20-          CCATTTTGAGATAGAGCGGGTGCGTGTATTTAGGATCATATTCCATAACATCCCTGCCTC
                      ____________________________________________________________
consensus             CCATTTTGAGATAGAGCGGGTGCGTGTATTTAGGATCATATTCCATAACATCCCTGCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036P20-          ATCTACTCTCTGATCCATATCAAATGCTAGCAGAAGCAAATCATAGGTACCCATAGTTGC
JMSF036P20+                     TGATCCATATCAAATGCTAGCAGAAGCAAATCATAGGTACCCATAGTTGC
                      ____________________________________________________________
consensus             ATCTACTCTCTGATCCATATCAAATGCTAGCAGAAGCAAATCATAGGTACCCATAGTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036P20-          TCCTTGACCTTTGCTCAGCATCCACTTGGCCACCTGGATTAGTCGTCTCCACTGGCTTTG
JMSF036P20+           TCCTTGACCTTTGCTCAGCATCCACTTGGCCACCTGGATTAGTCGTCTCCACTGGCTTTG
                      ____________________________________________________________
consensus             TCCTTGACCTTTGCTCAGCATCCACTTGGCCACCTGGATTAGTCGTCTCCACTGGCTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036P20-          TTTCCTTAATATTCTTAAGGCCTTAGCTGCTGCAATCACCGGAAACTCAGTTTCCCATGC
JMSF036P20+           TTTCCTTAATATTCTTAAGGCCTTAGCTGCTGCAATCACCGGAAACTCAGTTTCCCATGC
                      ____________________________________________________________
consensus             TTTCCTTAATATTCTTAAGGCCTTAGCTGCTGCAATCACCGGAAACTCAGTTTCCCATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036P20-          TACCCATTTATCTAGTGCAGCATAAACAGCATTCTTCTCATTTGGAAGTCCTGAGATAAT
JMSF036P20+           TACCCATTTATCTAGTGCAGCATAAACAGCATTCTTCTCATTTGGAAGTCCTGAGATAAT
                      ____________________________________________________________
consensus             TACCCATTTATCTAGTGCAGCATAAACAGCATTCTTCTCATTTGGAAGTCCTGAGATAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036P20-          CCTAACAAGATTGAGTGCCTTCTGCCCAGACCCAGCAGAATCTCTTTTCTTCCAT     
JMSF036P20+           CCTAACAAGATTGAGTGCCTTCTGCCCAGACCCAGCAGAATCTCTTTTCTTCCATAATTG
                      ____________________________________________________________
consensus             CCTAACAAGATTGAGTGCCTTCTGCCCAGACCCAGCAGAATCTCTTTTCTTCCATAATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF036P20+           GTGTTCTTTCTTTCCTCTTCTCTGTAGTTTCTTCTCACCAGGATTGGATCTAGTCAGAGA
                      ____________________________________________________________
consensus             GTGTTCTTTCTTTCCTCTTCTCTGTAGTTTCTTCTCACCAGGATTGGATCTAGTCAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF036P20+           TCGCTCGCTTTGACTACGGGTTATGTGGACTGGTGGCATACCAATTACCTTTTCAGCTGA
                      ____________________________________________________________
consensus             TCGCTCGCTTTGACTACGGGTTATGTGGACTGGTGGCATACCAATTACCTTTTCAGCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF036P20+           CACTGCAAACTTCATAGCTTTCTTCCTAGGAGCATGGTACTTCAAGAACTGAATTTGCAG
                      ____________________________________________________________
consensus             CACTGCAAACTTCATAGCTTTCTTCCTAGGAGCATGGTACTTCAAGAACTGAATTTGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF036P20+           CAAACCATCCACTCTAGCACCAGAAATCTGCTTTTGTATTAGTGTTGAAAATTGGTTAGG
                      ____________________________________________________________
consensus             CAAACCATCCACTCTAGCACCAGAAATCTGCTTTTGTATTAGTGTTGAAAATTGGTTAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF036P20+           AAATGTATAAGCACAACCGCTAGACATCATACTCTAGTTTTCTACTTCAAGAAATTATGC
                      ____________________________________________________________
consensus             AAATGTATAAGCACAACCGCTAGACATCATACTCTAGTTTTCTACTTCAAGAAATTATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF036P20+           GGAAGAAGCACACATATATCTGATATCCCCTTCAAGCTGGAGAGAAGACGAAGGGATGCC
                      ____________________________________________________________
consensus             GGAAGAAGCACACATATATCTGATATCCCCTTCAAGCTGGAGAGAAGACGAAGGGATGCC